BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483068
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40230.1 | Symbols: | HXXXD-type acyl-transferase family pr... 2289 0.0
> AT2G40230.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr2:16803092-16804741 REVERSE LENGTH=1650
Length=1650
Score = 2289 bits (1239), Expect = 0.0
Identities = 1375/1441 (95%), Gaps = 8/1441 (1%)
Strand=Plus/Plus
Query 84 atatatatataataCACATTGCAGAGACCCACCTTGTTGTTTATTTCTGAAGAAGAAGAA 143
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 63 ATATATATATAATACACATAGCAGAGACCCACCTTGTTGTTTATTTCTGAAGAAGAAGAA 122
Query 144 AAACAGAGCATCCTaa-aa-aaaaaaaCAAACCAATGGGATCCTTAGTTCATGTGAAAGA 201
|||||||||||| ||| || ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 123 AAACAGAGCATCATAAGAAGAAAAAAA-AAAGCAATGGGATCCTTAGTTCATGTGAAAGA 181
Query 202 AGCCACAGTTATTACTCCTTCCGACCAAACACCTTCTTCTGTTCTGCCTCTCTCCGCTTT 261
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 182 AGCCACAGTTATTACTCCTTCCGACCAAACACCTTCTTCTGTTCTGTCTCTCTCCGCTTT 241
Query 262 AGATTCTCAGCTTTTCCTCCGTTTCACCATTGAATACCTCCTCGTTTACCCACCCGTTTC 321
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 242 AGATTCTCAGCTTTTCCTCCGATTCACCATTGAATACCTCCTCGTTTACCCACCCGTTTC 301
Query 322 CGACCCGGATTACTCTCTCTCCGGCCGTCTCAAATCCGCTCTATCTCGCGCTCTCGTTCC 381
||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 302 CGACCCGGAGTATTCTCTCTCCGGTCGTCTCAAATCCGCTCTCTCTCGCGCTCTCGTTCC 361
Query 382 TTACTTCCCTTTCTCCGGCCGCGTCCGGGAAAAACCCGACGGCGGCGGAGGTCTCGAGGT 441
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 362 TTACTTCCCTTTCTCCGGCCGCGTCCGAGAAAAACCCGACGGCGGCGGAGGTCTCGAGGT 421
Query 442 CAATTGCCGTGGCCAAGGTGCTCTGTTTCTTGAAGCCGTCTCTGATATCCTCACGTGCCT 501
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 422 CAATTGCCGTGGCCAAGGTGCTCTGTTTCTTGAAGCCGTCTCTGACATCCTCACGTGCCT 481
Query 502 TGACTTTCAGAAACCTCCCCGGCACGTGACTAGCTGGAGAAAGCTTCTTTCACTCCACGT 561
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 482 TGACTTTCAGAAACCTCCCCGGCACGTGACTAGCTGGAGAAAGCTTCTTTCGCTCCACGT 541
Query 562 CATCGATGTCCTCGCTGGTGCTCCACCTCTCGTAGTTCAGCTGACATGGCTCCGTGACGG 621
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 542 CATCGATGTCCTCGCTGGTGCTCCACCTCTCGTCGTTCAGCTCACTTGGCTCCGTGACGG 601
Query 622 TGGTGCTGCCTTGGCCGTCGGTGTTAACCACTGCGTCTCCGATGGAATCGGCAGCGCTGA 681
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 602 TGGTGCTGCTTTAGCCGTCGGTGTTAACCACTGCGTCTCCGATGGAATCGGTAGCGCCGA 661
Query 682 GTTTCTCACTTTATTCGCCGACTTATCTAAAGACTCGCTGAGTCTAACCGAGTTAAGGA- 740
||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| |
Sbjct 662 GTTTCTCACTTTATTCGCCGAGTTATCTAAAGACTCACTGAGTCAAACCGAGTTAA-AAC 720
Query 741 GGAAACACCTCTGGGATCGCCAATTGCTTATGCCGTCTCCGACTCGTGACTCATTGAGCC 800
||||||| ||||||||||| |||||||||||||||||||||| ||||||||| ||||| |
Sbjct 721 GGAAACATCTCTGGGATCGTCAATTGCTTATGCCGTCTCCGATTCGTGACTCGTTGAGTC 780
Query 801 ATCCCGAGTTTAACCGAGTTCCCGATCTATGCGGATTTGTCAACCGATTCAACGCCGAGC 860
|||||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 781 ATCCCGAGTTCAACCGTGTTCCCGATCTATGCGGATTCGTTAACCGATTCAACGCCGAGC 840
Query 861 GACTCGTTCCTACATCGGTTGTCTTCGAGAGACAGAAACTTAACGAGCTAAAGAAACTCG 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GACTCGTTCCTACATCGGTTGTCTTCGAGAGACAGAAACTTAACGAGCTAAAGAAACTCG 900
Query 921 CGAGTCGACTCGGTGAGTTCAATTCGAAACACACATCGTTCGAGGTACTCTCTGCACATG 980
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 901 CGAGTCGACTCGGTGAGTTCAATTCTAAACACACATCGTTCGAGGTACTCTCTGCACATG 960
Query 981 TTTGGCGGAGCTGGGCGAGATCACTGAACTTGCCATCGAATCAAATCCTTAAGCTTTTGT 1040
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 961 TATGGCGGAGCTGGGCGAGATCACTGAACTTGCCATCGAATCAGGTCCTTAAGCTTTTGT 1020
Query 1041 TTAGTATCAACATTAGAGACCGAGTCAAACCGAGTCTGCCCAGTGGATTCTACGGGAACG 1100
|||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1021 TTAGCGTCAACATTAGAGACCGAGTCAAACCGAGTCTACCCAGTGGGTTCTACGGGAACG 1080
Query 1101 CATTCGTCGTCGGATGTGCTCAAACCACCGTGAAAGACTTGACGGAGAAAGGATTAAGCT 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CATTCGTCGTCGGATGTGCTCAAACCACCGTGAAAGACTTGACGGAGAAAGGATTAAGCT 1140
Query 1161 ACGCGACGATGCTCGTGAAACAAGCGAAGGAACGAGTCGGCGACGATTACGTCAGATCGG 1220
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1141 ACGCGACGATGCTCGTGAAACAAGCGAAGGAGCGAGTCGGTGACGAGTACGTCAGATCGG 1200
Query 1221 TGGTGGAAGCTGTGAGCAAGGAGAGAGCGAGTCCTGACTCGGTTGGAGTCTTGATACTGT 1280
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1201 TGGTGGAAGCTGTGAGCAAGGAGAGAGCGAGTCCTGACTCGGTTGGAGTCTTGATATTGT 1260
Query 1281 CGCAGTGGTCACGACTCGGTTTAGAGAAGCTTGATTTCGGTTTGGGTAAACCGGTTCATG 1340
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1261 CGCAATGGTCACGTCTCGGTTTAGAGAAGCTTGATTTTGGTTTGGGTAAACCGGTTCATG 1320
Query 1341 TAGGATCGGTTTGTTGCGACCGTTACTGTTTGTTGCTTCCGGTTCCTGAACGAAGTGACG 1400
| |||||||| |||||||||||||||||||||||||||||| ||||||||| || |||||
Sbjct 1321 TTGGATCGGTCTGTTGCGACCGTTACTGTTTGTTGCTTCCGATTCCTGAACAAAATGACG 1380
Query 1401 CCGTTAAAGTAATGGTCGCAGTTCCGTCAAGCGCCGTTGACACCTACGAGAATCTTGTGA 1460
||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||
Sbjct 1381 CCGTTAAAGTAATGGTCGCCGTTCCGTCAAGCTCTGTTGACACGTACGAGAATCTTGTGA 1440
Query 1461 CGAGTCCTAACGCTTAGATTAAAGAAAGGATAAATTCTAAtttttt--t-tttACCTTTT 1517
||||||||||||||||||||| |||||||||||||||||||||||| | ||||| ||||
Sbjct 1441 CGAGTCCTAACGCTTAGATTAGAGAAAGGATAAATTCTAATTTTTTACTCTTTACGTTTT 1500
Query 1518 T 1518
|
Sbjct 1501 T 1501
Score = 100 bits (54), Expect = 3e-20
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1524 CCTCCGTTGACTTGTAAAATATGAGTTTTGACttttttttttttAAATCCATTTTTGGTT 1583
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1540 CCTCCGTTGACTTGTAAAATATGAGTTTTGACTTATTTTATTTTAAATCCATTTTTGGTT 1599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78212449110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5