BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483081
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40290.1 | Symbols: | Eukaryotic translation initiation fac... 2076 0.0
> AT2G40290.1 | Symbols: | Eukaryotic translation initiation factor
2 subunit 1 | chr2:16828766-16831054 REVERSE LENGTH=1464
Length=1464
Score = 2076 bits (1124), Expect = 0.0
Identities = 1301/1383 (94%), Gaps = 26/1383 (2%)
Strand=Plus/Plus
Query 1 CCTTGCTCATCTCTTATCCCTAGCCAAAAAATTCAGT-TGATTTGCTCCGTCGCCT-AAA 58
|||||||||| ||||||| |||| ||| | || |||||||||||||||||| |||
Sbjct 17 CCTTGCTCATTTCTTATCTCTAG-----AAA-CCTGTCTGATTTGCTCCGTCGCCTAAAA 70
Query 59 AGTCTAAAACCCTAAGTTTCTCCGCC-CG-AG---T---CG-----ACGTAGAGTGAATT 105
||||||||||||||||| |||||||| || || | || ||| ||||||||||
Sbjct 71 AGTCTAAAACCCTAAGTGTCTCCGCCTCGTAGCTTTACCCGATTCAACGAAGAGTGAATT 130
Query 106 CGCGTGACCTTAAGCAGTATCGAAATCTTTCAATCATGGCGAGTCAAGCACCGAATCTCG 165
||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 131 CGCGTGAGCTCAAGCAGTATCGAAATCTACCAATCATGGCGAGTCAAACACCGAATCTCG 190
Query 166 AGTGTCGGATGTACGAGGCGAAATACCCAGAGGTGGATATGGCGGTTATGATCCAGGTGA 225
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 191 AGTGTCGGATGTACGAGGCGAAATACCCAGAGGTGGATATGGCGGTGATGATCCAGGTGA 250
Query 226 AGAACATCGCCGATATGGGAGCCTACGTTTCTCTCCTCGAGTACAACAACATCGAAGGCA 285
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 251 AGAACATTGCCGATATGGGAGCTTATGTTTCTCTCCTCGAGTACAACAACATCGAAGGCA 310
Query 286 TGATCCTCTTCTCCGAGCTCTCTCGTCGTCGGATCCGAAGTGTCAGCAGTTTGATTAAGG 345
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 311 TGATCCTTTTCTCCGAGCTCTCTCGTCGTCGGATCCGAAGTGTTAGCAGTTTGATTAAGG 370
Query 346 TCGGAAGAATTGAGCCTGTCATGGTTCTCCGTGTGGACAAAGAGAAAGGTTACATTGATC 405
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 371 TCGGAAGAATTGAGCCTGTCATGGTTCTCCGTGTTGACAAAGAGAAAGGTTACATTGATC 430
Query 406 TGAGCAAACGTAGAGTCAGTGAGGAGGATATTCAGACTTGTGAAGAGAGGTATAACAAGA 465
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 431 TGAGCAAACGTAGAGTCAGCGAGGAAGATATTCAGACTTGTGAAGAGAGGTATAACAAGA 490
Query 466 GCAAGCTTGTGCATTCTATCATGCGCCATGTTGCTGAGACCCTATCTATTGATTTGGAGG 525
|||| ||||| ||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 491 GCAAACTTGTTCATTCTATCATGCGCCATGTTGCTGAGACTCTTTCAATTGATTTGGAGG 550
Query 526 AGTTGTATGTGAACATTGGTTGGCCTTTGTATCGAAGACATGGTCATGCTTTTGAGGCCT 585
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 551 ACTTGTATGTGAACATTGGTTGGCCTTTGTATCGACGACATGGTCATGCTTTTGAGGCTT 610
Query 586 TCAAGATCTTAGTGACCGATCCTGATTCGGTGTTGGGTCCCCTCACCCGTGAGATCAAAG 645
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 611 TCAAGATCTTAGTGACGGATCCTGATTCAGTGTTGGGTCCTCTCACCCGTGAGATCAAAG 670
Query 646 AAGTTGGACCCGATGGACAAGAGGTGACTAAGGTTGTACCTGCTGTTACGGAAGAAGTGA 705
||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 AAGTTGGGCCTGATGGGCAAGAGGTGACTAAGGTTGTACCTGCTGTTACGGAAGAAGTGA 730
Query 706 AAGATGCACTTGTGAAGAACATTAGGAGGAGAATGACACCACAACCAATGAAAATCCGGG 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 AAGATGCACTTGTGAAGAACATTAGGAGGAGAATGACACCACAACCAATGAAAATCCGGG 790
Query 766 CTGATATCGAATTGAAGTGTTTCCAGTTTGACGGAGTTGTTCACATTAAGGAGGCCATGA 825
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 791 CTGATATCGAATTGAAGTGTTTTCAGTTTGATGGAGTTGTTCACATTAAGGAGGCTATGA 850
Query 826 GAAATGCTGAAGCCGCTGGAAATGAAGACTGTCCTGTTAAGATTAAGTTGGTTGCTCCAC 885
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 851 AAAATGCTGAAGCCGCTGGAAATGAAGACTGTCCTGTTAAGATTAAATTGGTTGCTCCAC 910
Query 886 CTCTGTATGTCCTTACTACTCAGACACTTGACAAGGAGCAAGGGATTGAAATTCTAAACA 945
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 911 CTCTGTATGTCCTTACTACTCAGACACTTGACAAGGAACAAGGGATTGAAATTCTAAACA 970
Query 946 AAGCCATAGCAGCATGCACTGAGACAATTGAGACACACAAAGGCAAGCTTGTCGTTAAGG 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 AAGCCATAGCAGCATGCACTGAGACAATTGAGACACACAAAGGCAAGCTTGTCGTTAAGG 1030
Query 1006 AGGGAGCTAGAGCTGTGAGTGAACGTGATGATAAGATGCTGACAGAACACATGGCTAAGC 1065
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1031 AGGGGGCTAGAGCTGTGAGTGAACGTGATGAAAAGATGCTGACAGAACACATGGCTAAGC 1090
Query 1066 TACGTCTTGACAATGAAGAAATTAGCGGCGATGAAGAGAGCGGAGACGAAGAAGAGGACA 1125
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1091 TACGTCTTGACAATGAAGAAATGAGCGGCGATGAAGATAGCGGAGACGAAGAAGAGGACA 1150
Query 1126 CAGGGATGGGAGAAGTGGATCTCGATGGTGGTGCCGGAATCATTGAGTAAGATTGCCGGA 1185
| || ||||| |||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1151 CTGGTATGGGCGAAGTGGATCTCGATGCAGGTGCCGGAATCATCGAGTAAGATTGCCGGA 1210
Query 1186 TTTTTCTTTCTATTAAATCTACCCAGTCTCAACAGTTG-AGTATTTTGTTTTAAGCTTTG 1244
||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||
Sbjct 1211 TTTTTCTTTCTATTAAATCTACCCAATCTCAACAGTCCCAGTATTTTGGTTTAAGCTTTG 1270
Query 1245 ACAAGGCAGTAGAAAAACCTCCGAGAGGATTTATGTGTTTTTTGATGACTCTTGAGGCAT 1304
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1271 ACAAGGCAGTAGAAAAACCTCCGAGAGGATTTATGTGCTTTTTGATGACTCT-GAGGCAT 1329
Query 1305 TTTATTTTACCCATAGTGGGT--T-ACATATCAATCATACATTCATGGTTTTATAAAAGA 1361
|||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||
Sbjct 1330 TTTATTTTACCCATAGGGGGTGGTTACATATCAATCATACATTCATGGTTTTATAAAAGA 1389
Query 1362 TTT 1364
|||
Sbjct 1390 TTT 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68573944470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5