BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483083
Length=1016
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40300.1 | Symbols: ATFER4, FER4 | ferritin 4 | chr2:1683129... 1511 0.0
> AT2G40300.1 | Symbols: ATFER4, FER4 | ferritin 4 | chr2:16831293-16833280
REVERSE LENGTH=1054
Length=1054
Score = 1511 bits (818), Expect = 0.0
Identities = 964/1032 (93%), Gaps = 20/1032 (2%)
Strand=Plus/Plus
Query 1 ATTCGTCTTCTCCAATTTTCTCGCGAAGAAAACTTTCCAAC-------CAATCTAAACGA 53
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 1 ATTCGTCTTCTCCAATTTTCTCGCGAAGAAAACTTTCCTACTTTGTTTCAATCCAAACGA 60
Query 54 GTCAAAATGCTTCTCAAGACTGTCTCTTCATCTTCTTCTTCAGCTCTCTCGCTGGTGAAT 113
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCAAAATGCTTCTCAAGACTGTTTCTTCATCTTCTTCTTCAGCTCTCTCGCTGGTGAAT 120
Query 114 TTCCACGGCGTGAAGAAGGATGTGTCTCCTTTGTTATCTTCCATTTCATCGAATCTTCGA 173
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 TTCCATGGCGTGAAGAAGGATGTGTCTCCTTTGTTACCTTCCATTTCATCGAATCTTCGA 180
Query 174 GTTTCTTCTGGAAAACCTGGAAACTTATCTTTCTCTGTTCGCGCATCTAAGAGCTCAACC 233
||||||||||||||| ||||||||||| |||||||| ||||||||||||| |||||||||
Sbjct 181 GTTTCTTCTGGAAAATCTGGAAACTTAACTTTCTCTTTTCGCGCATCTAAAAGCTCAACC 240
Query 234 ACCGATGCGCTAAGCGGCGTTGTATTCGAGCCGTTTAAGGAAGTGAAAAAGGAGCTCGAT 293
||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 241 ACCGACGCGCTAAGCGGCGTTGTCTTCGAGCCGTTTAAGGAAGTAAAAAAGGAGCTCGAT 300
Query 294 CTCGTCCCAACCAGCTCTCATCTCTCACTCGCTCGACAAAAGTACTCAGACGAGTGCGAA 353
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTCGTCCCTACCAGCTCTCATCTCTCACTCGCTCGACAAAAGTACTCAGACGAGTGCGAA 360
Query 354 GCCGCCATTAACGAGCAGATCAATGTGGAATACAATGTTTCGTATGTGTATCACGCTATG 413
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 GCCGCCATTAACGAGCAGATCAATGTGGAATACAATGTCTCGTATGTGTATCACGCTATG 420
Query 414 TATGCTTACTTCGATCGGGATAACATCGCGCTCAAGGGTCTTGCCAAGTTCTTTAAGGAA 473
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 TATGCTTACTTTGATCGGGATAACATCGCGCTCAAAGGTCTTGCCAAGTTCTTTAAGGAA 480
Query 474 TCAAGCGTGGAAGAAAGAGAGCATGCTGAGAAGTTAATGGAGTACCAGAATAAACGTGGT 533
||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 481 TCAAGTTTGGAAGAAAGAGAGCATGCTGAGAAGTTAATGGAGTATCAGAACAAACGTGGT 540
Query 534 GGCAGGGTTAAGTTACAGTCTATTGTAATGCCTCTTTCAGAGTTTGAACATGTTGACAAA 593
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGGAGGGTTAAGTTACAGTCCATTGTAATGCCTCTTTCAGAGTTTGAACATGTTGACAAA 600
Query 594 GGAGATGCTCTATATGGCATGGAGCTTGCTTTGTCACTGGAGAAACTAGTTAATGAGAAG 653
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 GGAGATGCTCTTTATGGCATGGAGCTTGCTCTGTCACTGGAGAAACTAGTTAATGAGAAG 660
Query 654 CTCTTAAACCTTCACAGTGTTGCTTCAAAGAACAATGATGTGCACTTGGCAGATTTTATT 713
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 661 CTCTTAAACCTTCACAGTGTTGCTTCGAAGAACAATGATGTCCACTTGGCAGATTTTATT 720
Query 714 GAGAGCGAGTTTCTGACCGAGCAGGTGGAAGCAATCAAGATGATCTCAGAATATGTGGCT 773
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 721 GAGAGCGAGTTTCTGACAGAGCAGGTGGAAGCAATCAAGTTGATCTCAGAATATGTGGCT 780
Query 774 CAACTGCGACGAGTTGGCAAAGGACACGGAACATGGCATTTCAATCAGATGCTTCTGGAA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CAACTGCGACGAGTTGGCAAAGGACACGGAACATGGCATTTCAATCAGATGCTTCTGGAA 840
Query 834 GGGTAAGCAGCTACGAGGGACTCTTGTGTCTAGTGTGTTTCTATATGAAGCTCT-CTT-A 891
|||||||||||| ||||||||||||||||||| |||||||||||||| | ||| ||| |
Sbjct 841 GGGTAAGCAGCTTCGAGGGACTCTTGTGTCTACTGTGTTTCTATATGT-G-TCTACTTTA 898
Query 892 -GTTTAAGTTCTTCAGCTTTTACGATTTTGTGAGGTAG-A--CTTCtttttttttttttt 947
||||| |||||| |||||||||||||||||||||||| | ||||||||| | |
Sbjct 899 TGTTTA-GTTCTTTAGCTTTTACGATTTTGTGAGGTAGTAGACTTCTTTTTCTGTAAGAG 957
Query 948 tGTAAGAGACAA-AG-ACATGACTTTAAATTCTGGTCTAAGGTTCATCAA-CCCACCTGG 1004
|| ||||| | |||| |||||| |||||||| ||||||||||||| |||||||||
Sbjct 958 ACAAA-AGACATGATCACATAACTTTATATTCTGGTATAAGGTTCATCAAACCCACCTGG 1016
Query 1005 GGATCGATTCTA 1016
|||||||||||
Sbjct 1017 TGATCGATTCTA 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49782039677
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5