BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483086
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40320.1 | Symbols: TBL33 | TRICHOME BIREFRINGENCE-LIKE 33 |... 2276 0.0
AT3G11030.1 | Symbols: TBL32 | TRICHOME BIREFRINGENCE-LIKE 32 |... 392 5e-108
> AT2G40320.1 | Symbols: TBL33 | TRICHOME BIREFRINGENCE-LIKE 33
| chr2:16840147-16842282 FORWARD LENGTH=1604
Length=1604
Score = 2276 bits (1232), Expect = 0.0
Identities = 1465/1574 (93%), Gaps = 29/1574 (2%)
Strand=Plus/Plus
Query 1 AGTAATTCTTGAAGCAATGCCAAAAT-AAGTTCTTTTGGCTTCCTCTTCCCACA-TCTTA 58
|||| ||||||||||||| ||||||| ||||||||||||||||||| ||||||| |||||
Sbjct 1 AGTATTTCTTGAAGCAATTCCAAAATAAAGTTCTTTTGGCTTCCTCCTCCCACATTCTTA 60
Query 59 TTTGGTTGAGGAGAATGAGATCATCAAGAACCCAAAGTGTTCATTTCTTAATTTTATCTT 118
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TTTGGTTGAGGAGAATGAGATCATCAAGAACACAAAGTGTTCATTTCTTAATTTTATCTC 120
Query 119 CTCTTTTCCTAATTATATAAAATTTGAACACTGAAATCACATTTGTAACACTCATTCTC- 177
||||||||||||| |||||||| || ||||||||||||||||||||| ||||||
Sbjct 121 CTCTTTTCCTAATAATATAAAA-TT------TGAAATCACATTTGTAACACTAATTCTCA 173
Query 178 AATCCTAAACATGAAACCTTCATCACCAATTTCACTCGCTACTTCTTCAATTGCTAGAAA 237
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 174 AATCCTAAACATGAAACCTTCATCACCAATTTCACTCACTAGTTCTTCAATTGCTAGAAA 233
Query 238 AACTCGTCTTTCACCTTATCTCTTCACACTCTTAGCTTTTATCCTCTTCGTCTCTGTCCT 297
| ||||| |||| ||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct 234 AGCTCGTTTTTCTCCTTACCTCTTCACACTCTTAGCCTTCATTCTTTTCGTCTCTGTCCT 293
Query 298 CTATGGTGAAGATTTCATGTGCATATTTGGACAGCTCGAGCCTAACTTTGTCCTCCCGCC 357
||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 294 CTATGGTGAAGATTTTATGTGCATCTTTGGACAGCTCGAGCCTAACTTCGTCCTCCCGCC 353
Query 358 TTCTCGAACAACCGAGAAGAACAAGAAGTCAGAGAAGCTTGCGTTTTCTATTGGTAAAAC 417
|||||||||| |||| ||||| ||||| || ||||||||||||||| |||||||||||||
Sbjct 354 TTCTCGAACACCCGAAAAGAATAAGAAATCGGAGAAGCTTGCGTTTGCTATTGGTAAAAC 413
Query 418 AGAAGAAAGTTGTGACGTTTTCAGCGGGAAGTGGGTGAGAGATGAAGTCTCCCGACCACC 477
||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 414 AGAGGAAAGCTGTGACGTTTTCAGCGGGAAATGGGTGAGAGATGAAGTCTCCCGACCACT 473
Query 478 GTACGAAGAATGGGAGTGTCCGTACATTCAACCTCAGCTTACGTGTCAAGAACACGGCCG 537
||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 474 GTATGAGGAATGGGAGTGTCCGTACATTCAACCTCAGCTTACATGTCAAGAACACGGCCG 533
Query 538 TCCCGACAAAGATTACCAATTCTGGCGGTGGCAACCCAATCATTGCGATCTTCCCTCGTT 597
|||||||||||| ||||| || ||||||||||| || ||||| |||||||||||||||||
Sbjct 534 TCCCGACAAAGACTACCAGTTTTGGCGGTGGCAGCCTAATCACTGCGATCTTCCCTCGTT 593
Query 598 CAACGCGTCGCTGATGCTGGAGACATTGAGAGGGAAGAGGATGATGTATGTAGGAGACTC 657
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 594 CAACGCGTCACTGATGCTGGAGACATTAAGAGGGAAGAGGATGATGTATGTAGGAGACTC 653
Query 658 ATTAAACCGTGGAATGTTTGTATCGATGATTTGTCTTCTTCATCGTCTTATCCCTGAAGA 717
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 654 GTTAAACCGTGGAATGTTTGTATCAATGATTTGTCTTCTTCATCGTCTTATTCCTGAAGA 713
Query 718 TCAGAAATCAATCAAAACCAATGGTTCCCTCACTGTCTTCACTGCCAAGGAGTATAACGC 777
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TCAGAAATCAATTAAAACCAATGGTTCCCTCACTGTCTTCACTGCCAAGGAGTATAACGC 773
Query 778 GACGATAGAGTTCTATTGGGCACCGTTTCTTCTAGAATCGAATTCAGACGATGCAATTGT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GACGATAGAGTTCTATTGGGCACCGTTTCTTCTAGAATCGAATTCAGACGATGCAATTGT 833
Query 838 CCATAGAATATCGGATAGGGTTGTGAGAAAAGGATCAATTAACAAACATGGACGGCACTG 897
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 834 CCATAGAATATCGGATAGGGTTGTGAGAAAAGGATCAATTAACAAACATGGTCGTCACTG 893
Query 898 GAAAGGCGTCGATATAATCGTATTCAACACTTATCTATGGTGGATGACTGGATTGAAGAT 957
|||||| |||||||||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 894 GAAAGGAGTCGATATAATCATCTTCAACACTTATCTGTGGTGGATGACTGGATTGAAGAT 953
Query 958 GAACATCTTGCAAGGATCGTTTGCCGATAAAGAGAAGAATATCGTGGAGGTTTCGACTGA 1017
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 954 GAACATCTTGCAAGGATCGTTTGATGATAAAGAGAAGAATATCGTAGAGGTTTCGACTGA 1013
Query 1018 AGATGCATACCGGATGGGTATGAAGAGTATGTTGAGATGGGTGAAGAACAATATGGATCG 1077
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1014 AGATGCGTACCGGATGGGTATGAAGAGTATGTTGAGATGGGTGAAGAACAACATGGATCG 1073
Query 1078 TAAGAAAACTAGGGTTTTCTTCACAAGCATGTCTCCTACTCATGCCAAGGGCATAGATTG 1137
||||||||||||||| |||||||| ||||||||||| || ||||||||||| ||||||||
Sbjct 1074 TAAGAAAACTAGGGTCTTCTTCACTAGCATGTCTCCAACGCATGCCAAGGGGATAGATTG 1133
Query 1138 GGGAGGTGGACCGGGTCAGAATTGCTATAATCAGACAACACTAATAGAAGATCCGAGCTA 1197
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1134 GGGAGGTGAACCGGGTCAGAATTGCTATAATCAGACAACACTTATAGAAGATCCAAGCTA 1193
Query 1198 TTGGGGATCAGATTGTCGGAAAAGTATAATGAAAGTGATTGGAGAAGTGTTTGGAAGATC 1257
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1194 CTGGGGATCAGATTGTAGGAAAAGCATAATGAAAGTGATTGGAGAAGTGTTTGGAAGATC 1253
Query 1258 GAAAACACCAATAACGTTACTGAACATAACGCAGATGTCGAATTATAGGAAAGATGCTCA 1317
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 1254 GAAAACACCGATAACGTTACTGAACATAACGCAAATGTCGAATTACAGGAAAGATGCACA 1313
Query 1318 TACGTCGATATACAAGAAGCAGTGGAGTCCACTTACAGCGGAGCAGCTGGAGAATCCAAC 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 TACGTCGATATACAAGAAGCAGTGGAGTCCACTTACAGCGGAGCAGCTGGAGAATCCAAC 1373
Query 1378 GAGCTATGCGGATTGTGTACACTGGTGCTTGCCTGGCCTTCAAGATACTTGGAATGAGCT 1437
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1374 GAGCTATGCGGATTGTGTACATTGGTGCTTGCCTGGCCTTCAAGATACTTGGAATGAGCT 1433
Query 1438 TCTCTTTGCTAAACTTTTCTATCCTTGAGAGAAGAGAA--CATCTTTTT-----G--G-- 1486
|||||||||||||||||||||| ||||||| ||||||| ||| ||||| | |
Sbjct 1434 TCTCTTTGCTAAACTTTTCTATACTTGAGATAAGAGAAAACATTTTTTTCCTTTGAAGAC 1493
Query 1487 --------TTTTAGATTTTGGAAAGAGATATTGTCGAGAAATTGTAAAATGTAGTCATTG 1538
|||| || ||||||||||||| |||| ||||||||||||||| |||||||||
Sbjct 1494 GACAGCGCTTTTTGAGTTTGGAAAGAGATCTTGTGGAGAAATTGTAAAATTTAGTCATTG 1553
Query 1539 AATTGATATTGTCT 1552
||||||||||||||
Sbjct 1554 AATTGATATTGTCT 1567
> AT3G11030.1 | Symbols: TBL32 | TRICHOME BIREFRINGENCE-LIKE 32
| chr3:3457227-3459380 REVERSE LENGTH=1509
Length=1509
Score = 392 bits (212), Expect = 5e-108
Identities = 762/1019 (75%), Gaps = 71/1019 (7%)
Strand=Plus/Plus
Query 484 AGAATGGGAGTGTCCGTACATTCAACCTCAGCTTACGTGTCAAG-A-ACACGGCCGTCCC 541
||||| ||||||||||||||||| || ||||| || || | | | || |||||||||
Sbjct 452 AGAATCCGAGTGTCCGTACATTCAGCCGCAGCTCACTTG-C-CGCACGCATGGCCGTCCC 509
Query 542 GACAAAGATTACCAATTC-TGGCGGTGGCAACC-CAATCATTGC-GATCTTCCCTCGTTC 598
|| | ||||| | | || ||| | |||| ||| | || ||| | ||||| |||||
Sbjct 510 GATAGTGATTATC-AGTCATGGAGATGGCGACCTGATTC-CTGCTCA-CTTCCTTCGTTT 566
Query 599 AACGCGTCGCTGATGCTGGAGA-CATTGAGAGGGAAGAGGATGATGTAT-GTAGGAGACT 656
|| ||| || ||||| |||||| | || |||||||||| |||||||| | || ||||| |
Sbjct 567 AATGCGACGGTGATGTTGGAGAGC-TTAAGAGGGAAGAAGATGATGT-TCGTTGGAGATT 624
Query 657 CATTAAACCGTGGAATGTTTGTATCGATGATTTGTCTTCTTCA-TCGTCTTATCCCTGAA 715
| || ||| | ||||||| ||| || | || ||||||||||| || | ||||| | |
Sbjct 625 CGTTGAACAGAGGAATGTATGTTTCTCTCATCTGTCTTCTTCATTC-ACAAATCCCAG-A 682
Query 716 G-A-TCAGAAATCAATCAAAACCAAT-GGTTCCCTCACTGTCTTCACTGC-CAAGGAGTA 771
| | || ||||| || | | | | || || ||||| |||||| || | |||||| ||
Sbjct 683 GAACTC-CAAATCCATGGATA-CTTTCGGATCACTCACCGTCTTCTCT-CTCAAGGATTA 739
Query 772 TAACGCGACGATAGAGTTCTATTGGGCACCGTTTCTTCTAGAATCGAATTCAGACGATGC 831
|| || ||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 740 CAATGCAACGATTGAGTTCTATTGGGCACCGTTTCTTCTAGAATCGAATTCAGATAACGC 799
Query 832 AATTGTCCATAGAATATCGGATAGGGTTGTGAGAAAAGGATCAATTAACAAACATGG-AC 890
|| || |||||| |||| ||| | ||||||| |||||||| || |||||||| || |
Sbjct 800 AACAGTTCATAGAGTATCAGATCGAATTGTGAGGAAAGGATCGATCAACAAACACGGTA- 858
Query 891 GGCACTGGAAAGGCG-TCGATATAATCGTATTCAACACTTATCTA-TGGTGGATGACTGG 948
|||| ||| ||| | | |||||| | || |||||||| || || ||||||| ||||||
Sbjct 859 GGCATTGGCGAGGGGCT-GATATAGTTGTGTTCAACACATA-CTTGTGGTGGAGGACTGG 916
Query 949 ATTGAAGATGAACATCTTGCAAGGATCGTTTGCC-G-ATAAAGA-GAAGA-ATATCGTGG 1004
|| || ||||| |||||| |||| || ||| | | || | || ||||| | ||||| |
Sbjct 917 CTTCAAAATGAAGATCTTGGAAGGTTC-TTT-CAAGGATGA-GAAGAAGAGA-ATCGTTG 972
Query 1005 AGGTTTCGACTGAAGATGCATACCGGATGG-GTATGAAGAGTATG-TTGAGATGGGTGAA 1062
|| | || ||||||||| || | |||| || |||||| |||| || | |||||||||
Sbjct 973 AGATGGAGAGTGAAGATGCTTATAGAATGGCGT-TGAAGACTATGGTTAA-ATGGGTGAA 1030
Query 1063 GAACAATATGGATCG-TAAGAAAACTAGGGTTTTCTTCACAAGCATGTCTCCTACTCATG 1121
||| |||||||||| | ||| || ||||||||||| | | ||||||||||||||||
Sbjct 1031 GAAGAATATGGATCCATT-GAAGACGAGGGTTTTCTTTGCTACCATGTCTCCTACTCATT 1089
Query 1122 CCAAGGGCATAG-ATTGGGGAGGTGGACCGGGTCAGAATTGCTATAATCAGACAACACTA 1180
||||||| || |||||||||| | || || | ||||| || ||||| || ||||
Sbjct 1090 ACAAGGGCG-AGGATTGGGGAGGCGAACAAGGAAAAAATTGTTACAATCAAACGACACCG 1148
Query 1181 ATAGAAGATCC-GAGCTATTGGGGATCAGATTGTCGG-AAAAG-TATAATGAAAGTGATT 1237
|| |||| | || | ||||| |||||| || | | |||| | |||||||||||||
Sbjct 1149 ATCCAAGA-CATGAACCATTGGCCATCAGACTG-CAGCAAAACCT-TAATGAAAGTGATA 1205
Query 1238 GGAGAAGTGTTTGG--AA-GATC-GAAAACACCAATAACGTTACTGAACATAACGCAGA- 1292
||||| | || | || || | || || | ||| |||| ||||| || || |
Sbjct 1206 GGAGAGGAATTAGACCAAAGAGCAGAGTTT-CCGGTGACGGTACTTAACATTACACA-AC 1263
Query 1293 TGTC-GAATTATAGGAAAGATGCTCATACGTCGATATACAAGAAGCAGTGGAGTCCACTT 1351
| || | | || ||||||| || || ||||| || ||||||||||| ||||| ||| ||
Sbjct 1264 TCTCTGGCT-ATCGGAAAGACGCGCACACGTCAATCTACAAGAAGCAATGGAGCCCA-TT 1321
Query 1352 -AC-AGCGGAGCAGCTGG-AGAATCCAACGAGCTA-TGCGGATTGTGTACACTGGTGCTT 1407
|| | ||||||||| | | ||||| | ||||| | | || ||| |||| ||||||||
Sbjct 1322 GACGAA-GGAGCAGCTAGCA-AATCCGGCTAGCTACT-CAGACTGTATACATTGGTGCTT 1378
Query 1408 GCCTGGCCTTCAAGATACTTGGAATGAGCTTCTCTTTGCTAAACT-TTTCTATCCTTGA 1465
|||||| ||||||||||||||||| |||||| ||||||| || | ||| ||||| |||
Sbjct 1379 GCCTGGTCTTCAAGATACTTGGAACGAGCTTTTCTTTGCCAAGTTATTT-TATCCATGA 1436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76606031670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5