BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483087
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40330.1 | Symbols: PYL6, RCAR9 | PYR1-like 6 | chr2:1684486... 1531 0.0
> AT2G40330.1 | Symbols: PYL6, RCAR9 | PYR1-like 6 | chr2:16844864-16845934
REVERSE LENGTH=1071
Length=1071
Score = 1531 bits (829), Expect = 0.0
Identities = 973/1040 (94%), Gaps = 20/1040 (2%)
Strand=Plus/Plus
Query 1 TACATGTAAATATCTCTCATTAATACAACATTACAACCTCACGAAGAAACCCATTTGTTT 60
||||||||||||||||||| | | | | |||||||||||||||||| ||||||||||
Sbjct 3 TACATGTAAATATCTCTCA-T--T---A-A-TACAACCTCACGAAGAAAACCATTTGTTT 54
Query 61 TCTTAGAGAGAGCCAAGAATATTAAAGGAGATATCGAAAAAAGACTTGCTTTAAAAATGC 120
|||||||||||||||||||||||||| ||||||| || |||||| ||||||||| |||||
Sbjct 55 TCTTAGAGAGAGCCAAGAATATTAAAAGAGATATAGAGAAAAGATTTGCTTTAATAATGC 114
Query 121 CATCGTCGATACAGTTTCAGAGATCCTCCACCGCCGCAGAAGCAGCCAACCCCACCGTAA 180
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 115 CAACGTCGATACAGTTTCAGAGATCCTCCACCGCCGCAGAAGCAGCCAACGCCACCGTAA 174
Query 181 GAAACTATCACCACCACCA-CAACAAACAGGTTCAAAAAGTGAGCCTCACGCGCGGGATG 239
||||||||| ||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 175 GAAACTATCCCCACCACCATC-AGAAACAGGTTCAAAAAGTGAGCCTCACGCGCGGGATG 233
Query 240 GCTGATGTACCGGAGCACGTGGAGCTTTCTCACACGCACGTGGTTGGTCCTTCTCAGTGC 299
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 234 GCTGATGTGCCGGAGCACGTGGAGCTTTCCCACACGCACGTGGTTGGTCCTTCTCAGTGC 293
Query 300 TTCTCCGTCGTGGTGCAAGACGTGGAGGCTCCGGCTTCCGCCGTCTGGTCGATCCTAAGC 359
|||||||||||||| ||||||||||||||||||| |||| | ||||||||||||||||||
Sbjct 294 TTCTCCGTCGTGGTACAAGACGTGGAGGCTCCGGTTTCCACAGTCTGGTCGATCCTAAGC 353
Query 360 CGCTTCGAACACCCTCAAGCGTACAAACACTTCGTGAAAAGCTGCCACGTGGCTATCGGA 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 354 CGCTTCGAACACCCTCAAGCGTACAAACACTTCGTGAAAAGCTGCCACGTGGTTATCGGA 413
Query 420 GACGGTCGAGAGATTGGGTCGGTGAGGGAGGTCCGAGTCGTCTCTGGTCTCCCTGCGGCG 479
|||||||||||| ||||||||||||| |||||| ||||||||||||||||||| ||||||
Sbjct 414 GACGGTCGAGAGGTTGGGTCGGTGAGAGAGGTCAGAGTCGTCTCTGGTCTCCCCGCGGCG 473
Query 480 TTTAGCTTAGAGCGGCTTGAGATCATGGATGATGAACGCCACGTCATCAGTTTCAGCGTC 539
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 474 TTTAGCTTAGAGCGGCTTGAGATCATGGACGATGATCGCCACGTCATCAGTTTCAGCGTC 533
Query 540 GTGGGTGGGGACCACAGACTTATGAACTACAAGTCGGTAACGACGGTGCATGAGTCGGAG 599
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 534 GTTGGTGGGGACCACAGACTCATGAACTACAAGTCGGTGACGACGGTGCATGAGTCGGAG 593
Query 600 TCA-TCCGACGACGGTAAGAAGAGGACACGTGTCGTCGAGTCATACGTCGTTGACGTACC 658
| | |||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 594 -GAGGACTCCGACGGCAAGAAGAGGACACGTGTCGTTGAGTCATACGTCGTTGACGTACC 652
Query 659 GGCGGGTAACGATAAGGAAGAGACTTGTAGCTTCGCGGATACCATTGTACGGTGCAACTT 718
||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||
Sbjct 653 GGCGGGTAACGATAAGGAAGAGACTTGTAGCTTTGCTGATACTATAGTACGGTGCAACTT 712
Query 719 GCAATCGCTGGCTAAACTCGCCGAGAACACGTCTAAATTCTCGTAATTACatttttttca 778
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 713 GCAATCGCTGGCTAAACTCGCCGAGAACACTTCTAAATTCTCGTAATTACA-TTTTTTCA 771
Query 779 atctttttatttttattatattttctat-tttctctctttcaaaatttatcttttatttt 837
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 772 ATCTTTTTATTTTTATTTTATTTTCTATATTTCTCTCTTTCAAAATTTATCTTTTATTTT 831
Query 838 tGGGATTCTCGAGGTGGTTTTGGATTTTAAGATTTAAGTATTTAACAATCAATCGTAGGC 897
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||
Sbjct 832 TGGGATTCTCGAGGTGGTTTTGGATTTTAAGATTTAAGTATTTAACTATCG-TCG--GG- 887
Query 898 GATTTT-CGAAACTaaaaaaaaaaaaaaaaaTTAGAA-AAACAAGATGGTTTTGGTTTTT 955
|||||| ||||||||||| |||||| || ||||| | ||||||||||||||||||||||
Sbjct 888 GATTTTTCGAAACTAAAACAAAAAACAAGAATTATATCAAACAAGATGGTTTTGGTTTTT 947
Query 956 CGAAGTTAGGGTTTTTAGGGTCTGTTAAATGTATGTCTCAACGATACTTTGGGTTTACCC 1015
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 948 CGAAGTTAGGGTTTTTAGGGTCTGTTAAATGTATGTCTCAACGATACTTTGGTTTTACCC 1007
Query 1016 TTAAAACCATTTCTTCTTGT 1035
||||||||||||||||||||
Sbjct 1008 TTAAAACCATTTCTTCTTGT 1027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5