BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483090
Length=2313
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40360.1 | Symbols: | Transducin/WD40 repeat-like superfami... 3541 0.0
> AT2G40360.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:16852880-16856690 REVERSE LENGTH=2560
Length=2560
Score = 3541 bits (1917), Expect = 0.0
Identities = 2185/2315 (94%), Gaps = 16/2315 (1%)
Strand=Plus/Plus
Query 1 TTTCTTCTCAGACCAAAACTCGCCTCTGAAAGCTCCGATGACGAAGAAGAAAAAAGGAGC 60
||||||||||| |||||||||||||||| |||||||||||||||||| || ||||||||
Sbjct 19 TTTCTTCTCAGGCCAAAACTCGCCTCTGGAAGCTCCGATGACGAAGAGGAGCAAAGGAGC 78
Query 61 TAACGAAGATAAGATTATTGAAACCAAGAGCAAAACCGTTTCTGGGAAATCTCAGAAACA 120
||||||||||||| | || |||||||| ||||||| ||||||||| ||||||||||||||
Sbjct 79 TAACGAAGATAAGCTGATAGAAACCAAAAGCAAAAACGTTTCTGGAAAATCTCAGAAACA 138
Query 121 GAAGAAACCAGTAGAAATAGAAGAAAGCTTGAAAGAGGAGGACCTTCTACAAGAATCTGG 180
|||||||||||||| | || ||||||||| |||||||| ||||||||||||| ||| ||
Sbjct 139 GAAGAAACCAGTAG--A-AGCAGAAAGCTTAAAAGAGGAAGACCTTCTACAAGCATCCGG 195
Query 181 AACTGATTCTGATTACGACGGCGATAGTTTGCCTGGGTCTTTGGATTCCGATGATTTCGA 240
||||||||||||||||||||| |||||||||||||| |||||| ||||||| ||||||||
Sbjct 196 AACTGATTCTGATTACGACGGAGATAGTTTGCCTGGTTCTTTGAATTCCGACGATTTCGA 255
Query 241 CTCCGATTTTTTCGATTCAGAGGATGATGGAACACAGGAAGGAACAGAAGATGGAGATGT 300
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 256 CTCCGATTTTTCCGATTCAGAGGATGATGGAACACATGAAGGAACAGAAGATGGAGATGT 315
Query 301 AGAATTTTCCGAGGACGACGTGCTTGGTAATTTGCTTGAGCATGAGGGGTCAATTGATAA 360
|||||||||||| ||||||| | | ||||||||||||| ||||||||||||||
Sbjct 316 AGAATTTTCCGATGACGACG-AC---G-----TGCTTGAGCATGATGGGTCAATTGATAA 366
Query 361 TGAAGATGATGAAGAAAGTGAACAAGTAGAAAGTGACAACGGTGAGGAAGATGGGAGTGA 420
|| |||||||| | ||||||||| |||| |||||||| ||||||| ||||||||||
Sbjct 367 CGAGGATGATGATGGAAGTGAACATGTAGGTAGTGACAATAATGAGGAACATGGGAGTGA 426
Query 421 TGAAGGTTCTGAGCGAGATGAAGCGGTTGAAGAGAGCGATTCATCAGAAGATGAGGTTCC 480
||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 427 TGAAGATTCTGAGCGAGGTGAAGCGGTTGAAGAGAGCGATTCCTCAGAAGATGAGGTTCC 486
Query 481 TTCTAGAAATACAGTTGGGGATGTTCCATTGGAGTGGTATAAAGATGAGAAACATATTGG 540
|||||||||||||||||| ||||||| || |||||||| |||||||||||||||||||
Sbjct 487 ATCTAGAAATACAGTTGGGAATGTTCCCTTAAAGTGGTATGAAGATGAGAAACATATTGG 546
Query 541 TTATGACATCAC-GGGAAAGAAGATTACTAAGAAAGAAAAACAAGATAAACTCGACTCTT 599
||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TTATGACCTCACTGGG-AAGAAGATTACTAAGAAAGAAAAACAAGATAAACTCGACTCTT 605
Query 600 TTCTTGCAACTATGGATGACTCTAAGAATTGGCGCAAAATTTATGATGAATATAATGACG 659
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 606 TTCTTGCAACTATAGATGACTCTAAGACTTGGCGCAAAATTTATGATGAATATAATGACG 665
Query 660 AGGAAGTAGAGCTGACTAAAGAGGAGTGCAACCTCATGC-GTAGAATACTCAAAGGGGAA 718
|||| || |||||||||||||||||| |||| || | | | ||||||||||||||||||
Sbjct 666 AGGACGTTGAGCTGACTAAAGAGGAGAGCAAGATCGTTCAG-AGAATACTCAAAGGGGAA 724
Query 719 GCTCCACATGCTGACTTTGATCCATATGCGCCTTATGTTGATTGGTTCAAATGGGATGAT 778
||||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 725 GCTCCACATGCGGACTTTGATCCATATGCACCTTATGTTGAGTGGTTCAAACATGATGAT 784
Query 779 TCAATACATCCACTCTCAAGTGCGCCAGAGCCCAAGCGAAGATTCATCCCTTCAAAATGG 838
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 785 GCAATACATCCACTCTCAAGTGCACCAGAGCCCAAGCGAAGATTCATCCCTTCAAAATGG 844
Query 839 GAGGCCAAAAAGGTTCTTAAGCTTGTTAGAGCAATCCGGAAGGGGTGGATCAAGTTTGAT 898
||||||||||||||| ||||| ||||||||||||| || |||||||||||||||||||||
Sbjct 845 GAGGCCAAAAAGGTTGTTAAGATTGTTAGAGCAATACGTAAGGGGTGGATCAAGTTTGAT 904
Query 899 AAGCCTGAAGAAGAGCCCAATGTATACCTCTTATGGGGTGACGATTCGACGTCTGATCAA 958
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 905 AAGCCTGAAGAAGAGCCCAATGTATACCTTTTATGGGGTGATGATTCGACATCTGATCAA 964
Query 959 AAGAGCAAGCATTTAACATATATTCCTCCACCCAAGCTGAAATTGCCAGGACACGATGAA 1018
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 965 AAGAGCAAGCATTTAACTTATATTCCTCCACCCAAGCTTAAATTGCCAGGACACGATGAA 1024
Query 1019 TCATACAATCCTTCTTTGGAATATATTCCAACAGAGGAGGAGAAAGCCTCATATGAATTG 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1025 TCATACAATCCTTCTTTGGAATATATTCCAACAGAGGAGGAGAAAGCCTCATATGAGTTG 1084
Query 1079 ATGTATGAGGAAGATCGTCCAAAATTCATTCCTAAAAGGTTTACATCTCTGAGAAGCATC 1138
|||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1085 ATGTTTGAGGAAGATCGTCCAAAATTCATTCCTACAAGGTTTACATCTTTGAGAAGCATC 1144
Query 1139 CCAGCGTATGAGAATGCACTGAAGGAGTCTTTTGAGCGTTGTTTGGATCTATACCTATGT 1198
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 CCTGCGTATGAGAATGCACTGAAGGAGTCTTTTGAGCGTTGTTTGGATCTATACCTATGT 1204
Query 1199 CCGAGAGTTCGAAAGAAGAGGATAAACATCGACCCTGAATCTTTGAAGCCTAAGCTACCT 1258
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1205 CCAAGAGTTCGAAAGAAGAGAATAAACATCGACCCTGAATCTTTGAAGCCTAAGCTACCT 1264
Query 1259 AGTAGGAAGGATCTTAGACCTTATCCTAATTCCTGTTATCTTGAATATAAAGGACATACA 1318
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1265 AGTAGGAAGGATCTTAGACCTTATCCTAACTCCTGTTATCTTGAATATAAAGGCCATACA 1324
Query 1319 GGGGCTGTTACTACCATATCCACTGATAGTTCTGGCGAGTGGATAGCCTCAGGTTCAACT 1378
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 GGGGCTGTTACTTCAATATCCACTGATAGTTCTGGCGAGTGGATAGCCTCAGGTTCAACT 1384
Query 1379 GATGGATCTGTTCGTATGTGGGAAGTGGAAACTGGTAGATGTCTTAAGGTCTGGCAGTTT 1438
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1385 GATGGATCTGTCCGTATGTGGGAAGTGGAGACTGGTAGATGCCTTAAGGTCTGGCAGTTT 1444
Query 1439 GATGAAGCTATTATGTGTGTGGCTTGGAATCCTCTTTCCAGGCTTCCAGTTTTAGCCGTT 1498
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 GACGAAGCTATCATGTGTGTGGCTTGGAATCCTCTTTCCAGGCTTCCAGTTTTAGCCGTT 1504
Query 1499 GCCATGGGACGAGATTTGTTTTTTCTGAACACTGAACTTGGGACTGATGAGGAACAGGAA 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 GCCATGGGACGAGATTTGTTTTTTCTGAACACTGAACTTGGGACTGATGAGGAACAGGAA 1564
Query 1559 ATTACTAAAGAGAGGCTTCACTCAGGAAACATTCCAGAACCAGAAGTGTCTGTTGCAGCA 1618
|||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 1565 ATTACTAAAGAGAGGCTTCACTCAGGAAACATCCCAGAACCAGACGCATCTGTTGCAGCA 1624
Query 1619 ATTGTAACCTGGCTACCTGATGAGTTATATGGAGGGATCAAGATAAGACATTTTAAGAGC 1678
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1625 ATTGTAACCTGGCTACCTGATGAGTTATATGGAGGGATTAAGATAAGACATTTTAAGAGC 1684
Query 1679 ATATCGTCTATTGACTGGCATCGTAAAGGAGACTATCTCTCAACAGTGATGGCATCTGGC 1738
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1685 ATATCGTCTATTGACTGGCATCGTAAAGGAGACTATCTCTCAACAGTGATGGCATCCGGG 1744
Query 1739 GAAACGCGGGGAGTGGTACTGCACCAACTCTCAAAACAGAAAACACAAAGGCTCCCATTT 1798
||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1745 GAAACACGGGGAGTGGTATTGCACCAACTGTCAAAACAGAAAACACAAAGGCTCCCATTT 1804
Query 1799 AAGATCCGCGGACTTCCAGTCTGCACACTTTTTCATCCCAGCCTTTCTTACTTCTTCGTT 1858
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1805 AAGATTCGTGGACTTCCAGTCTGTACACTTTTTCATCCCAGCCTTTCTTACTTCTTCGTT 1864
Query 1859 GCGACAAGAAAGGACGTGCGTGTTTACAATCTTTTGAAGCCAGGCGAGGCCACCAAAAAG 1918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1865 GCGACAAGAAAGGACGTGCGTGTTTACAATCTTTTGAAGCCAGGCGAGGCCACCAAAAAG 1924
Query 1919 CTTGAGACGGGATTGAGAGAAATCTCATCCATGGCGATTCATCCTGGTGGTGATAATCTG 1978
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1925 CTTGAGACAGGATTGAGAGAAATCTCATCAATGGCGATTCATCCTGGTGGTGATAATCTG 1984
Query 1979 ATAGTAGGAAGCAAAGAAGGGAAGATGTGTTGGTTTGACATGGATCTGTCTTCAAAACCG 2038
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1985 ATAGTAGGAAGCAAAGAAGGGAAGATGTGTTGGTTTGACATGGATCTATCTTCGAAACCA 2044
Query 2039 TACAAGACGCTTAAGAATCACCCTAAAGACATTACAAATGTGGCAGTTCATCGGTCATAT 2098
|||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 2045 TACAAGACTCTCAAGAATCATCCTAAAGACATTACAAATGTGGCAGTTCATCGATCATAT 2104
Query 2099 CCGTTATTTGCTTCGTGCTCGGAAGATTCAACAGCTTATGTTTTCCATGGAATGGTGTAT 2158
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2105 CCGTTATTTGCTTCGTGCTCGGAGGATTCAACAGCTTATGTTTTCCATGGAATGGTGTAT 2164
Query 2159 AATGATCTGAATCAGAATCCTCTGATTGTCCCATTGGAGATTCTAAGAGGTCATTCTTCA 2218
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2165 AATGATCTGAACCAGAATCCTCTGATTGTGCCATTGGAGATTCTAAGAGGTCATTCTTCA 2224
Query 2219 AAAGGAGGAGTCTTGGACTGCAAGTTTCATCCGAGACAACCATGGCTATTCACTGCAGGC 2278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2225 AAAGGAGGAGTCTTGGACTGCAAGTTTCATCCGAGACAACCATGGCTATTCACTGCAGGC 2284
Query 2279 GCTGACTCGATTATCAAACTCTATTGCCACTAGAT 2313
|||||||| ||||||||||||||||||||||||||
Sbjct 2285 GCTGACTCTATTATCAAACTCTATTGCCACTAGAT 2319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114808646415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5