BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483092
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40380.1 | Symbols: PRA1.B2 | prenylated RAB acceptor 1.B2 |... 1026 0.0
> AT2G40380.1 | Symbols: PRA1.B2 | prenylated RAB acceptor 1.B2
| chr2:16864495-16865442 REVERSE LENGTH=948
Length=948
Score = 1026 bits (555), Expect = 0.0
Identities = 613/642 (95%), Gaps = 0/642 (0%)
Strand=Plus/Plus
Query 26 CACACACTCACCGACACCACCAATAATGTCATCTTCTCCGGCGATTCTTCCCGTGACCAA 85
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 43 CACAGACTCACCGACACCACCAATAATGTCTTCTTCTCCGGCGATTCTTCCCGTCACCAA 102
Query 86 CCAGCAAGCAGCTACTCAATCTCAACCTCCAATCAATTCTCACGCCTTCCGTACATTCCT 145
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 103 CCAGCAAGCAGCCACTCAATCTCAACCTCCAATCAATTCTCACGCCTTCCGTACTTTCCT 162
Query 146 CTCACGTCTCTCATCCTCTCTCCGCGAAAGCCTCTCTCAACGCCGTCCATGGCTAGAACT 205
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 CTCACGCCTCTCGTCCTCTCTCCGCGAAAGCCTCTCTCAACGCCGTCCATGGCTAGAACT 222
Query 206 CGTAGATCGGAGCTCCTTCGCTAGACCTGACTCTCTGACCGATTCCTTCTCCCGGATCCG 265
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 223 CGTAGATCGGAGCTCCTTCGCTAGACCTGACTCTCTCACCGATTCCTTCTCCCGGATCCG 282
Query 266 TAAGAATCTGGCTTACTTCAAGGTCAATTACTCCGCAgtcgtctccttagtcctcgcttt 325
||||||||| ||||||||||| ||||||||||||||| | ||||| |||||||| |||||
Sbjct 283 TAAGAATCTCGCTTACTTCAAAGTCAATTACTCCGCAATTGTCTCGTTAGTCCTTGCTTT 342
Query 326 ctccctcctctcgcatccattctctcttctcgtcctcctctctctcttaggctcgtggat 385
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 343 CTCCCTCCTCTCGCATCCATTCTCGCTTCTCGTCCTCCTCTCTCTCTTAGGCTCCTGGAT 402
Query 386 gtttctctacctcttccgatcttcAGATCAGCCTTTGGTTCTCTTTGGTCGAACATTCTC 445
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 403 GTTTCTCTACCTCTTCCGATCTTCAGATCAGCCTTTGGTTCTCTTTGGTCGTAGTTTCTC 462
Query 446 AGATCGTGAGACTTTGCTTGCTCTGGTTTTGACTACGATTGTGGTTGTGTTTATGACGAG 505
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 463 AGATCGTGAGACTTTGCTTGGTCTTGTTTTGACTACGATTGTGGTTGTGTTTATGACGAG 522
Query 506 TGTTGGATCTTTGTTAACATCGGCTTTGACGATTGGAATCGCGATTGTTTGCTTACACGG 565
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 523 TGTTGGATCTTTGTTAACATCGGCGTTAACGATTGGAATCGCGATTGTTTGCTTACATGG 582
Query 566 TGCGTTTAGGGTTCCTGATGATTTGTTCTTGGATGATCAAGAGCCTGCTAATGCTGGTTT 625
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 583 TGCGTTTAGGGTTCCTGATGATTTGTTCTTGGATGAACAAGAGCCTGCTAATGCTGGTTT 642
Query 626 ACTCTCTTTCATTGGTAATTCTGCTGCTGCTTCTGTTGTTGC 667
|||||| ||||||||||||||||||||| |||||| || |||
Sbjct 643 ACTCTCGTTCATTGGTAATTCTGCTGCTACTTCTGCTGCTGC 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37424439515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5