BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483093
Length=1582
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40390.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2470 0.0
> AT2G40390.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G64190.1);
Has 75 Blast hits to 75 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:16867293-16869089
FORWARD LENGTH=1711
Length=1711
Score = 2470 bits (1337), Expect = 0.0
Identities = 1465/1527 (96%), Gaps = 7/1527 (0%)
Strand=Plus/Plus
Query 19 ATA-TCAAGATTAGCTTTAATGGCTTCTTGTGACACACCTGATGCATTTGCTTGGCTTCA 77
||| |||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 74 ATATTCAATATTAGCTCTAATGGCTTCTTGTGACACACCTGATGCGTTTGCTTGGCTTCA 133
Query 78 AACTCTTCCTCCTCTCTCTCAATGGAAAAGAAATTCAATGTCCATGTGTATTTGCTCTCC 137
||||||||||||||| |||| ||||||| |||||| ||||||||||||||||||||||||
Sbjct 134 AACTCTTCCTCCTCTTTCTCTATGGAAAGGAAATTTAATGTCCATGTGTATTTGCTCTCC 193
Query 138 AAATTCGTCACACCCATCTTTGAACTTCTCTCTTACTCGTACCCCTCAATCTCCAAACTT 197
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 194 AAATTCATCACACCCATCTTTGAACTTCACTCTTACTCGTACCCCTCAATCTCCAAACTT 253
Query 198 TTTCACCTTCTCTATAGTAGCCAATTTCAAGATTCCTATTACTCTCTTTGTTTCTAAGCC 257
|||||||||||| ||||||||||||||||||| |||||||||||||||| |||| || |
Sbjct 254 TTTCACCTTCTCGATAGTAGCCAATTTCAAGACTCCTATTACTCTCTTTATTTCAAAAAC 313
Query 258 TTTCAGAACCATTACCACTAACTCAACTAATTTCCTCAATGAAAATGTCATCTCTACTCT 317
|||||||||||||| |||||| ||||||| ||||||||||||||| ||||| ||||||||
Sbjct 314 TTTCAGAACCATTAGCACTAATTCAACTACTTTCCTCAATGAAAACGTCATATCTACTCT 373
Query 318 ATTGATGGGTTTTGTCGACGTAGTTCTCAACTATAACGTCAAAAGAACCACTTGTTCAAT 377
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 374 ATTGATGGGTTTTGTCGACGTTGTTCTCAACTATAACGTCAAGAGAACCACTTGTTCAAT 433
Query 378 CCAACTCCAAAACCTAGGCTCTACTTCTAACCTCAAAGACGTTTTCAACCTCGCGTTCTT 437
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 434 CCAACTCCAAAACCTAGGCTCCACTTCTAACCTCAAAGACGTTTTCAACCTCGCTTTCTT 493
Query 438 CACTTTCGTGTTCCTCATCTGCATATACGAAGCGCCAACGAGCCT-ACGAACAACTTGTC 496
|||||||||||||||||||||||| ||||| |||||||||||||| | ||||||||||||
Sbjct 494 CACTTTCGTGTTCCTCATCTGCATCTACGAGGCGCCAACGAGCCTGA-GAACAACTTGTC 552
Query 497 TCAAAACGGTGAAAGATCAGCTGGTAACTTGTAGGTCAAGGCAGGGCTCCAAGTTGCTCA 556
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 553 TCAAAACGGTGAAAGATCAGCTGGTAACTTGTAGGTCAAGGCAGGGCTCTAAGTTGCTCA 612
Query 557 TGGTCCAACTAGGCTCTAACCTTGAAGAACAATGGATGAGATCGCTGAATCTTGCGATAA 616
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 613 TGGTGCAACTAGGCTCTAACCTTGAAGAACAATGGATGAGATCGCTGAACCTTGCAATAA 672
Query 617 CCAACTGGATCATCGAGATTAAAGCGTTTCAGCATCTCAAGTCTCCTACTCCTTTGTTTT 676
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 673 CCAACTGGATCATCGAGATCAAAGCGTTTCAGCATCTCAAGTCTCCTTCTCCTTTGTTTT 732
Query 677 CTTATGCTTTCTCCACTCAAGGTTTGTGGAAAGTTCATATGTATTGTCCTGTGGTAGCAA 736
| ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 733 CATATGCTTTCTCGACTCAAGGTCTATGGAAAGTTCATATGTATTGTCCTGTGGTAGCAA 792
Query 737 TGGAAATGGAGAGCGTAAATAGTGCACTGCACGACGAGAGATTGTTCTTCTCGCTCAACT 796
||||||||||||||||||||||| | || ||||||||||||||||||||||||| ||||
Sbjct 793 TGGAAATGGAGAGCGTAAATAGTTCTCTAAACGACGAGAGATTGTTCTTCTCGCTAAACT 852
Query 797 ATCATCAACTTGAAGGTGTAATCCAATTCAACCACAAGATTTACGTTCGTGAAAAGTGGT 856
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 853 ATCATCAACTTGAAGGTGTAATCCAATTGAACCACAGGATTTACGTTCGTGAAAAGTGGT 912
Query 857 TTAACATCGCAGTGAATATTGACAACGTCAGGTGCGACATAATAAGGCTCGTGAACGAGA 916
||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 913 TTAACGTCGCAGTAAATATTGACAACGTCAGGTGCGACATAATAAGGCTTGTGAACGAGA 972
Query 917 AACT-TCTATCGGAACGTGGCATGGGAACAGAGGAAAAACATTTTCCCTCAAGAATATCA 975
|||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 973 AACTAT-TATCGGAACGTGGCATGGGAACAGAGGAAAAACATTTCCCCTCAAGAATATCA 1031
Query 976 TTGCAACTAACACCAACGATTCAATCAAACATCTTAATGGTATCCGTACAAAAATCTTCA 1035
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 TTGCAACTAACACCAACGAATCAATCAAACATCTTAATGGTATCCGTACAAAAATCTTCA 1091
Query 1036 GAAAACCCATTGACAGAATTCGAAGTAGAGAAAGGCATAGAAGCAACAATAGATCCACCA 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 GAAAACCCATTGACAGAATTCGAAGTAGAGAAAGGCATAGAAGCAACAATAGATCCACCA 1151
Query 1096 AACACATTCTTTGGACTGAAAGTCTCAGCCAACGAGACCACAACAAAAAGCATGAAGCCA 1155
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 AACACATTCTTTGGACTAAAAGTCTCAGCCAACGAGACCACAACAAAAAGCATGAAGCCA 1211
Query 1156 TGGAAGTTCGAGGAATGGGTTCATGGTTATAGCGCCAATCTTACTTGGTTTCTCCATGAT 1215
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1212 TGGAAGTTCGAGGAATGGGTTCATGGTTATAGCGCCAATCTCACTTGGTTTCTCCATGAT 1271
Query 1216 CTTGACGATGGAAGAGAAGTTTCATCCTCAAAACCATCGAAGGTCTCGATGATGAACCCT 1275
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 1272 CTTGACGATGGAAGAGAAGTTTCGTCCTCTAAACCATCGAAAGTCTCGATGATGAACCCT 1331
Query 1276 CGAGCTTGGTTCAAGAACCGGTACTCGAGCGCGTTTAGACCATTCACGAAGCAAGGAGGA 1335
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1332 CGAGCTTGGTTCAAGAACCGGTACTCGAGCGCGTTTAGACCGTTCACGAAGCAAGGAGGA 1391
Query 1336 GTTGTGTTTGCAGGAGATAGTTATGGGCAAAGCGTTTTGTGGAAAGTAGATAAAACGGCT 1395
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1392 GTTGTGTTTGCAGGAGATAGTTATGGGCAAAGCGTTTTGTGGAAAGTTGATAAAACGGCT 1451
Query 1396 ATTGGGAAAGTAATGGAGTTTGAGGTTAAAGGTTGCGTTTGGTTGACTTATTGGCCTAAC 1455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 ATTGGGAAAGTAATGGAGTTTGAGGTTAAAGGTTGCGTTTGGTTGACTTATTGGCCTAAC 1511
Query 1456 AAGCATCATACTTTTTATAGTGATACTAGAAAGTTGGAATTTAAGGAGATGCTTTACCTC 1515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1512 AAGCATCATACTTTTTATAGTGATACTAGAAAGTTGGAATTTAAGGAGATGCTTTACCTC 1571
Query 1516 AATCTTCCTTAGAT-TTTCGTTTTCTT 1541
|||||||||||||| |||| |||||||
Sbjct 1572 AATCTTCCTTAGATATTTC-TTTTCTT 1597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78112048020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5