BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483096
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40410.2 | Symbols: | Staphylococcal nuclease homologue | c... 1620 0.0
AT3G56170.1 | Symbols: CAN | Ca-2+ dependent nuclease | chr3:20... 628 2e-179
> AT2G40410.2 | Symbols: | Staphylococcal nuclease homologue |
chr2:16873399-16875396 FORWARD LENGTH=1290
Length=1290
Score = 1620 bits (877), Expect = 0.0
Identities = 1032/1101 (94%), Gaps = 33/1101 (3%)
Strand=Plus/Plus
Query 1 TGTCCTTCCTCTTTGGGA-T-T-CTCT----TCTGGT-AGGTATTAGGAAAGATCGAAAC 52
|||||||||||||| ||| | | |||| |||||| |||||||| |||||||| ||||
Sbjct 23 TGTCCTTCCTCTTTAGGATTCTCCTCTGGGCTCTGGTAAGGTATTA-GAAAGATCAAAAC 81
Query 53 TTTTTGGATTCCC----------TGAAAGATGGGTAACGCTCTTACGTTTCTCTACGGAA 102
||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 82 TTTTTGGATTCCCTGAAATTGGGTGAAAGATGGGTAACGCTCTTACGTTTCTCTACGGAA 141
Query 103 AATGCTGCAAACCCACAACGACCGACGACTCTCTCGGTCCTCACGGCGTCTCCGCCGCCA 162
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 142 AATGCTGCAAACCCACAACAACCGATGACTCTCTTGGTCCTCACGGCGTCTCCGCCGCCA 201
Query 163 CCGTTGGTGTTTCAGCTCTCGCTCACGACCTTTTCAACTTCGAGATCACTTCCCAGGTTC 222
|||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 202 CCGTCGGTGTTTCAGCTCTCGCTCACGATCTCTTCAACTTCGAGATCACTTCCCAGGTTC 261
Query 223 CTGAAGGGCTTGGGAGGTATGTTCAGTCGTCTAGAAAAGCTCAAGCAAACTGGTATCGAA 282
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 262 CTGAAGGGCTTGGGAGGTATGTTCAGTCATCTAGAAAAGCTCAAGCAAACTGGTATAGAA 321
Query 283 AAATACTTGAGGCATGGAAGCAAGCAAAACCTCCACCACAGACAGCAGAGGAAGCTTCTA 342
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 322 AAATACTTGAGGCATGGAAGCAAGCAAAACCTCCACCGCAGACAGCTGAGGAAGCTTCTA 381
Query 343 GGCTTGTCACTGATATCTTAAAAAGGAATCAGAAAGCTGATGTTGAGGGACTTTTGTCTT 402
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 382 GGCTTGTCACTGATATCTTAAAAAGGAATCAGAAAGCTGATGTTGAGGGGCTTTTGTCTT 441
Query 403 TCTATGGACTCCCTTTGTCTCATACTCTAGTTGAAGTCTCTGTTGAAGCTCCTGTGTCTT 462
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 442 TCTATGGACTCCCTTTGTCTCATACTCTAGTTGAAGTCACTGTTGAAGCTCCTGTG---T 498
Query 463 CTTTGCCTGAAGGGGTTCTTTTCGAATTTCAAACACTTCCGGTGGATCCAAAAGCTGTGG 522
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 CTTTGCCTGAAGGGATTCTTTTCGAATTTCAAACACTTCCGGTGGATCCAAAAGCTGTGG 558
Query 523 CAGATGGAGACACCATCACAGTGTATGTCAGTACTTCAGAGCCGGTAGTGTCATCTTATG 582
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 559 CAGATGGAGACACCATCACAGTGTATGTCAGTACTTCAGAGCCGGTTGTGTCATCTTCTG 618
Query 583 TTCCAAGGGAAGTCAATCTTGCAGCGGTTCAAAGAGCAAAAGCACGTGAGAAGAGGAATT 642
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 619 TTCCAAGGGAAGTCAATCTTGCAGCTGTTCAAAGAGCAAAAGCACGTGAGAAGAGAAATT 678
Query 643 ACCCAAAAGCAGACGAACTTCACCAAAAGATCATTGATTCTGGTTACAGGGTACTAACTA 702
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 679 ATCCAAAAGCTGACGAACTTCACCAAAAGATCATTGATTCTGGTTACAGGGTACTAAATA 738
Query 703 TTGAGAATGAGGAAGTGCTTGCTCGCAAATTCAGAATTAGACTAAGGGGAATAGATGCAC 762
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 739 TTGAGAATGAGGAAGTTCTTGCTCGGAAGTTCAGAATTAGACTAAGGGGAATAGATGCAC 798
Query 763 CAGAGAGCCAAATGCCATTTGGGAAAGAGGCACAACAAGGGCTCCTTAA-GATTGTTGGA 821
|||||||||||||||| |||||||||||||||||| |||||||| |||| |||||||||
Sbjct 799 CAGAGAGCCAAATGCCGTTTGGGAAAGAGGCACAAGAAGGGCTC-TTAAAGATTGTTGGG 857
Query 822 AGGAAAAGCTTGAAAGTGTTAGTTTATGGAGAAGATCAATATGGGCGATGCGTAGCTGAT 881
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 858 CGGAAAAGCTTGAAGGTGTTAGTTTATGGAGAAGATCAATATGGGCGATGCGTAGGTGAT 917
Query 882 TTATACTGCAATGGGATTTTTGTCCAGGAGGCAATGCTAAAGAAAGGGCTTGCATGGCAT 941
||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||
Sbjct 918 TTATACTGCAATGGGATCTTTGTCCAGGAGGCAATGTTAAAGAAAGGGCTTGCTTGGCAT 977
Query 942 TACTTAGCTTATGACAAGCGCCCGGTTCTCGCAAAGGCAAGATTATGGGAAAAGGAGGCA 1001
|||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 978 TACTTAGCTTATGACAAGCGCCCGGTTCTCGCAAAG------T---GGGAAAAGGAGGCA 1028
Query 1002 AGGCAGAAGCGTATTGGCTTGTGGGCTTCTTCAAATCCAGAGAAGCCATGGGACTGGAGA 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 AGGCAGAAGCGTATTGGCTTGTGGGCTTCTTCAAATCCAGAGAAGCCATGGGACTGGAGA 1088
Query 1062 AAGAATAATAGGCGTGAGTAG 1082
|||||||||||||| || |||
Sbjct 1089 AAGAATAATAGGCGGGAATAG 1109
> AT3G56170.1 | Symbols: CAN | Ca-2+ dependent nuclease | chr3:20842145-20844476
FORWARD LENGTH=1440
Length=1440
Score = 628 bits (340), Expect = 2e-179
Identities = 747/940 (79%), Gaps = 42/940 (4%)
Strand=Plus/Plus
Query 142 CTCACGGCGTCTCCGCCGCCACCGTTGGTGTTTCAGCTCTCGCTCACGACCTTTTCAACT 201
||||||||||||||||| | ||| || || |||||||| ||| || || || ||||
Sbjct 352 CTCACGGCGTCTCCGCCTCTTCCGGCGGCGTCTCAGCTCTTTCTCGTGATCTCTTAAACT 411
Query 202 TCGAGATCACTTCCCAGGTTCCTGAAG-GGCTTGGGAGGTATGTTCAGTCGT-CTAGAAA 259
|||||| |||||| |||||||||| || ||||||||| || ||| ||| | | | |||
Sbjct 412 TCGAGACCACTTCTCAGGTTCCTG-AGAAGCTTGGGAGTTACGTTGTGTCTTCCCA-AAA 469
Query 260 AGCTCAAGCAAACTGGTATCGAAAAATACTTGAGGCATGGAAGCAAGCAAAACCTCCACC 319
|||||||||||||||||| |||||||||||||||||||||||||||| || |||| ||
Sbjct 470 GGCTCAAGCAAACTGGTATAGAAAAATACTTGAGGCATGGAAGCAAGCTAAGCCTCGGCC 529
Query 320 -ACAGACAGCAGAGGAAGCTTCTAGGCTTGTCACT-GATATCT-TAAA-AAGGAATCAGA 375
| | || | |||||||| || |||||||| | | | || |||| || |||| |
Sbjct 530 TA-AAACTCCTGAGGAAGCCTCCAGGCTTGTTA-TCG-CGGCTCTAAAGAA-CCATCAAA 585
Query 376 AAGCTGATGTTGAGGGACTTTTGTCTTTCTATGGACTCCCTTTGTCTCATACTCTAGTTG 435
|||| |||||||||||||||||||||||||||||||| |||| |||| | ||| ||||
Sbjct 586 AAGCAGATGTTGAGGGACTTTTGTCTTTCTATGGACTACCTTCACCTCACAATCTCGTTG 645
Query 436 AAGTCTCTGTTGAAGCTCCTGTGTCTTCTTTGCCTGAAGGGGTTCT-TTTCGAATTTCAA 494
| ||| || |||||||||||||||| | ||| |||| |||| ||| || || ||
Sbjct 646 AGGTCCCTACGGAAGCTCCTGTGTCTT-TA--CCTAAAGGAGTTCGGTTT-GAGCTT-AA 700
Query 495 -ACACTTCCGGTGGATCCAAAAGCTGTGGCAGATGGAGACACCATCACAGTGTATGTCAG 553
|| |||||||||||| ||||| ||||||||||||| || || | || |||||||| ||
Sbjct 701 CACGCTTCCGGTGGATACAAAATCTGTGGCAGATGGTGATACTGTTACTGTGTATGTTAG 760
Query 554 TA-CTTCAGAGCCGGTAGTGTCATCTTATGTTCC-AAGGGAAGTCAATCTTGCAGCGGTT 611
|| | ||| ||| | |||||||||| | |||| |||| | || | |||||||||||||
Sbjct 761 TAGCAA-AGACCCGCTTGTGTCATCTTCTCTTCCTAAGG-ACGTGAGTCTTGCAGCGGTT 818
Query 612 CAAAGAGCAAAAGCACGTGAGAAGAGGAATTACCCAAAAGCAGACGAACTTCACCAAAA- 670
||||||| ||||| |||||||||| |||||| | ||||||| | ||||||| || |
Sbjct 819 AAAAGAGCCAAAGCGCGTGAGAAGAAGAATTATACTGAAGCAGATGCACTTCAC-AAGAC 877
Query 671 GATCATTGATTCTGGTTACAGGGT-ACTAACTATTGAGAATGAGGAAGTGCTTGCTCGCA 729
|||||| | ||||||||||||| | | ||| | || |||||||||||||||||||| |
Sbjct 878 GATCATAGCTTCTGGTTACAGGATGA-TAAGTTTTCAGAATGAGGAAGTGCTTGCTAA-A 935
Query 730 AA-TTCAGAATTAGACTAAGGGGAATAGATGCACCAGAGAGCCAAATGCCATTTGGGAAA 788
|| ||||||||||||||||| ||||||||| |||| |||||| ||||||| | ||| |||
Sbjct 936 AAGTTCAGAATTAGACTAAGCGGAATAGATTCACCGGAGAGCAAAATGCCGTATGGAAAA 995
Query 789 GAGGCACAACAAGGGCTCCTTAAGATTGTTGGAAGGAAAA-GCTTGAAAGTGTTAGTTTA 847
||||| || | | ||| || ||||| |||| |||| ||| ||||||| |||||||| ||
Sbjct 996 GAGGCGCATGATGAGCTACTCAAGATGGTTG-AAGGGAAATGCTTGAAGGTGTTAGTATA 1054
Query 848 TGGAGAAGATCAATATGGGCGATGCGTAGCTGATTTATACTGCAATGGGATTTTTGTCCA 907
| ||| |||| ||||| |||| |||| ||| ||||||||||||| | ||||| ||
Sbjct 1055 TACAGAGGATCGTTATGGAAGATGTGTAGGAGATATATACTGCAATGGAAAATTTGTACA 1114
Query 908 GGAGGCAATGCTAAAGAAAGGGCTTGCATGGCATTACT-TAGCTTATGACAAGCGCCCGG 966
||| | ||||||||||||||| ||||| |||||||| | |||| ||||||||||| | |
Sbjct 1115 GGAAGTAATGCTAAAGAAAGGTCTTGCTTGGCATTA-TGTAGCCTATGACAAGCGTGCAG 1173
Query 967 TTCTCGCAAAGGCAAGATTATGGGAAAAGGAGGCAAGGCAGAAGCGTATTGGCTTGTGGG 1026
||||||||| | ||||||| ||||| ||||| ||||| ||||||||||||
Sbjct 1174 AGCTCGCAAAG------T---GGGAAAATGAGGCTAGGCAAAAGCGCGTTGGCTTGTGGG 1224
Query 1027 CTTCTTCAAATCCAGAGAAGCCATGGGACTGGAGAAAGAA 1066
| ||||| |||||||||||||||||||| |||||||||||
Sbjct 1225 CATCTTCTAATCCAGAGAAGCCATGGGAGTGGAGAAAGAA 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53011775520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5