BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483098 Length=1517 Score E Sequences producing significant alignments: (Bits) Value AT2G40420.1 | Symbols: | Transmembrane amino acid transporter ... 2370 0.0 > AT2G40420.1 | Symbols: | Transmembrane amino acid transporter family protein | chr2:16877223-16879214 FORWARD LENGTH=1632 Length=1632 Score = 2370 bits (1283), Expect = 0.0 Identities = 1450/1529 (95%), Gaps = 17/1529 (1%) Strand=Plus/Plus Query 1 CATTACCATTTCCTCTTCGCCGGGGAAAATTC---T-G---C-TTCTCCGGTAGTAT-AA 51 |||||||||||||||||| ||||||||||||| | | | |||||||||||| | || Sbjct 14 CATTACCATTTCCTCTTCACCGGGGAAAATTCTGTTAGTTTCTTTCTCCGGTAGT-TGAA 72 Query 52 AGAAAATGTCTCCTGCGATTAAAGCTCCGCTCTTACCAAACCAAGAGCCTTCATCATCAT 111 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 73 AGAAAATGTCTCCTGCGATCAAAGCACCGCTCTTACCAAACCAAGAGCCTTCATCATCAT 132 Query 112 CATCGGAGAACCATGGATCATTCGCCGGAGCTGTGTTTAACATCTCAACAAGCATAGTCG 171 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 133 CATCGGAGAACCATGGATCATTCGCCGGAGCTGTGTTTAACATCTCGACAAGCATCGTCG 192 Query 172 GAGCTGGAATTATGGCGATTCCGGCGGCTTTCAAAGTTCTGGGTGTAATCCCATCTCTCT 231 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | Sbjct 193 GAGCTGGAATTATGGCGATTCCGGCGGCTTTCAAAGTCCTAGGTGTAATCCCATCTCTAT 252 Query 232 CGATAATCGTTATCATAGCTTGGCTATCAAATGTATCAGCTGGGTTTTTAATGAAATCCA 291 |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 253 CGATAATCGTAATCATAGCTTGGCTCTCCAATGTATCAGCTGGGTTTTTAATGAAATCCA 312 Query 292 GTCTCGCCGGAGAATCAACGACTTACGCCGGCGTAATGAAAGAATCGTTTGGAAAATCTG 351 ||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||| Sbjct 313 GTCTCGCCGGAGAATCAACAACTTACGCCGGCGTGATGAAGGAATCGTTCGGAAAATCTG 372 Query 352 GTGCCGTCGCTGTTACGATTGTTACAATGGTTGTGACTTTTGGGTCTATGATTATTTTCT 411 ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 373 GTGCCGTTGCTGTTACGGTTGTTACAATGGTTGTGACTTTTGGGTCTATGATTATTTTCT 432 Query 412 CGATTATTATAGGTGATGTTCTTTCTGGTAATGAAAAAGATGGAATCATACATTTAGGTC 471 ||||||| || ||||||||| |||| |||||||| ||||||||||||||||||||||||| Sbjct 433 CGATTATCATTGGTGATGTTATTTCGGGTAATGAGAAAGATGGAATCATACATTTAGGTC 492 Query 472 TTCTTCAAGAATGGTTTGGTTCTCATTGGTGGAATACGAGATTCTTTGGTTTGTTGTTCA 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 493 TTCTTCAAGAATGGTTTGGTTCTCATTGGTGGAATACGAGATTCTTTGGTTTGTTGTTCA 552 Query 532 TTTTTGTCTTCCTCTTGCTTCCTTTAGTCTTATGCAGACGTGTAGAAAGATTAGCATTAA 591 | |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | Sbjct 553 TCTTTGTCTTCCTCTTCCTTCCTTTAGTCTTATGCAGACGTGTAGAAAGATTGGCATTTA 612 Query 592 GTTCTGCAATTTCGTTTCTGCTTGCGTTACTCTTTGTTGTTATAAGCTCGGTGTTAGCGA 651 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 613 GTTCTGCAATTTCGTTTCTGCTTGCGTTACTCTTTGTTGTCATAAGCTCGGTGTTAGCGA 672 Query 652 TTATTGCACTAGTCCAAGGGAAAACAAAGACTCCGAGACTCTTCCCAGAACTCAACGATG 711 ||||||| || || |||||||| |||||| |||||||||||||||| |||||||| |||| Sbjct 673 TTATTGCTCTCGTGCAAGGGAAGACAAAGCCTCCGAGACTCTTCCCTGAACTCAATGATG 732 Query 712 GTGGATTATCGTTTTTCAGTCTCTTCACTGCTTCCCCTGTCATTGTAACAGCTTTCACAT 771 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 733 GTGGATTATCGTTTTTCAGTCTCTTCACTGCTTCCCCTGTCATTGTAACAGCCTTCACCT 792 Query 772 TTCATTTCAATGTCCATCCAGTGGCATTTGAACTCAAAGATCCATTAGATGTGCTTTCAG 831 |||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||| Sbjct 793 TTCATTTCAATGTCCATCCAGTAGCATTCGAACTCAAAGATCCATTAAATGTGCTTTCAG 852 Query 832 CAACAAGGATCTCTGTGATTCTGTGTGCTGCGATCTACTCAGCCACTGGTCTCTTTTGTT 891 ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 853 CAACAAGGATCTCTGTGATTCTGTGTGCTACGATCTACTCAGCTACTGGTCTCTTTTGTT 912 Query 892 ACCTTCTGTTTGGGGATTCCACTATGACAGATGTTTTAATGAACTTTGATCAAAGCACCA 951 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 913 ACCTTCTGTTTGGGGATTCCACTATGACAGATGTTCTAATGAACTTTGATCAAAGCACCA 972 Query 952 GTTCTTCCATTGGTTCATTACTAAATGACATTGTTAGACTCAGCTACGCGATTCACCTCA 1011 ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 973 GTTCTTCGGTTGGTTCATTACTAAATGATATTGTTAGACTCAGCTACGCGATTCACCTCA 1032 Query 1012 TGCTTGTGTTTCCTCTGCTCAACTTCTCGCTTAGAGCCAACCTCGACGAACTCTTGTTCC 1071 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1033 TGCTCGTGTTTCCTCTGCTCAACTTCTCGCTTAGAGCCAACCTCGACGAACTCTTGTTCC 1092 Query 1072 CTATGAAGCTTTCTTTAGTGGAAGACAACAAAAGATTCTTTGGAATCACTTTTCCATTAC 1131 |||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct 1093 CTATGAAGCTTTCTTTAGTGGAAGACAACAAAAGATTCTTCGCACTCACTTTTCCATTAC 1152 Query 1132 TGATATCTTGTTTCTTGGGTGCGATTGCAATACCGGACATTTGGTACTTCTTTCAGTTCT 1191 |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| Sbjct 1153 TGATATCTTGTTTCTTGGGTGCAATTGCCATACCAGACATTTGGTACTTCTTTCAGTTCT 1212 Query 1192 TGGGATCAACTTCTACAGTCTCTATAGCATTCATCTTTCCAGCTGCAATTGTCCTAAGGA 1251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1213 TGGGATCAACTTCTACAGTCTCTATAGCATTCATCTTTCCAGCTGCAATTGTCCTACGGA 1272 Query 1252 ATGTAAATGGTTTCTCGACTTTAAGAGAGAAGATTGTAGCTTCAGTAATGCTTGTTCTTG 1311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1273 ATGTAAATGGTTTCTCGACTTTAAGAGAGAAGATTGTAGCTTCAGTAATGCTTGTTCTTG 1332 Query 1312 CTGTTGCCACAAGTATCATCGCCATTTCCACAAATATATACACTTTCACAGCAACAGAAG 1371 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 1333 CTGTTGCCACAAGTATCATCGCTATTTCGACAAATATATACACTTTCACAGCAACAGAAG 1392 Query 1372 AAACATGAAAAGCTTTCAGGAGTCCCTTCTCTTCAAGAATTTGTTAGATGGTAGCGAGCT 1431 |||||||||| |||||| ||||||| ||||||||||| |||||||||||||||| |||| Sbjct 1393 AAACATGAAACGCTTTCTGGAGTCCTTTCTCTTCAAGGATTTGTTAGATGGTAG--AGCT 1450 Query 1432 TGTGTTGCATTTATTCGTATCTAT---ATGTAAAATAGGTTTGTAAGAAGTGTAGTGTTT 1488 |||||||||||||||| | ||||| ||||||||||||||||||||||||||| | | | Sbjct 1451 TGTGTTGCATTTATTCATGTCTATTGTATGTAAAATAGGTTTGTAAGAAGTGTA-T-TAT 1508 Query 1489 AATAGCAACTTCAGGAAAAATGTGTGTAT 1517 ||||||||||||||||||||||||||||| Sbjct 1509 AATAGCAACTTCAGGAAAAATGTGTGTAT 1537 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74849012595 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5