BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483098
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40420.1 | Symbols: | Transmembrane amino acid transporter ... 2370 0.0
> AT2G40420.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr2:16877223-16879214 FORWARD LENGTH=1632
Length=1632
Score = 2370 bits (1283), Expect = 0.0
Identities = 1450/1529 (95%), Gaps = 17/1529 (1%)
Strand=Plus/Plus
Query 1 CATTACCATTTCCTCTTCGCCGGGGAAAATTC---T-G---C-TTCTCCGGTAGTAT-AA 51
|||||||||||||||||| ||||||||||||| | | | |||||||||||| | ||
Sbjct 14 CATTACCATTTCCTCTTCACCGGGGAAAATTCTGTTAGTTTCTTTCTCCGGTAGT-TGAA 72
Query 52 AGAAAATGTCTCCTGCGATTAAAGCTCCGCTCTTACCAAACCAAGAGCCTTCATCATCAT 111
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 73 AGAAAATGTCTCCTGCGATCAAAGCACCGCTCTTACCAAACCAAGAGCCTTCATCATCAT 132
Query 112 CATCGGAGAACCATGGATCATTCGCCGGAGCTGTGTTTAACATCTCAACAAGCATAGTCG 171
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 133 CATCGGAGAACCATGGATCATTCGCCGGAGCTGTGTTTAACATCTCGACAAGCATCGTCG 192
Query 172 GAGCTGGAATTATGGCGATTCCGGCGGCTTTCAAAGTTCTGGGTGTAATCCCATCTCTCT 231
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 193 GAGCTGGAATTATGGCGATTCCGGCGGCTTTCAAAGTCCTAGGTGTAATCCCATCTCTAT 252
Query 232 CGATAATCGTTATCATAGCTTGGCTATCAAATGTATCAGCTGGGTTTTTAATGAAATCCA 291
|||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 253 CGATAATCGTAATCATAGCTTGGCTCTCCAATGTATCAGCTGGGTTTTTAATGAAATCCA 312
Query 292 GTCTCGCCGGAGAATCAACGACTTACGCCGGCGTAATGAAAGAATCGTTTGGAAAATCTG 351
||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||
Sbjct 313 GTCTCGCCGGAGAATCAACAACTTACGCCGGCGTGATGAAGGAATCGTTCGGAAAATCTG 372
Query 352 GTGCCGTCGCTGTTACGATTGTTACAATGGTTGTGACTTTTGGGTCTATGATTATTTTCT 411
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 GTGCCGTTGCTGTTACGGTTGTTACAATGGTTGTGACTTTTGGGTCTATGATTATTTTCT 432
Query 412 CGATTATTATAGGTGATGTTCTTTCTGGTAATGAAAAAGATGGAATCATACATTTAGGTC 471
||||||| || ||||||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct 433 CGATTATCATTGGTGATGTTATTTCGGGTAATGAGAAAGATGGAATCATACATTTAGGTC 492
Query 472 TTCTTCAAGAATGGTTTGGTTCTCATTGGTGGAATACGAGATTCTTTGGTTTGTTGTTCA 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 TTCTTCAAGAATGGTTTGGTTCTCATTGGTGGAATACGAGATTCTTTGGTTTGTTGTTCA 552
Query 532 TTTTTGTCTTCCTCTTGCTTCCTTTAGTCTTATGCAGACGTGTAGAAAGATTAGCATTAA 591
| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 553 TCTTTGTCTTCCTCTTCCTTCCTTTAGTCTTATGCAGACGTGTAGAAAGATTGGCATTTA 612
Query 592 GTTCTGCAATTTCGTTTCTGCTTGCGTTACTCTTTGTTGTTATAAGCTCGGTGTTAGCGA 651
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 613 GTTCTGCAATTTCGTTTCTGCTTGCGTTACTCTTTGTTGTCATAAGCTCGGTGTTAGCGA 672
Query 652 TTATTGCACTAGTCCAAGGGAAAACAAAGACTCCGAGACTCTTCCCAGAACTCAACGATG 711
||||||| || || |||||||| |||||| |||||||||||||||| |||||||| ||||
Sbjct 673 TTATTGCTCTCGTGCAAGGGAAGACAAAGCCTCCGAGACTCTTCCCTGAACTCAATGATG 732
Query 712 GTGGATTATCGTTTTTCAGTCTCTTCACTGCTTCCCCTGTCATTGTAACAGCTTTCACAT 771
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 733 GTGGATTATCGTTTTTCAGTCTCTTCACTGCTTCCCCTGTCATTGTAACAGCCTTCACCT 792
Query 772 TTCATTTCAATGTCCATCCAGTGGCATTTGAACTCAAAGATCCATTAGATGTGCTTTCAG 831
|||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||
Sbjct 793 TTCATTTCAATGTCCATCCAGTAGCATTCGAACTCAAAGATCCATTAAATGTGCTTTCAG 852
Query 832 CAACAAGGATCTCTGTGATTCTGTGTGCTGCGATCTACTCAGCCACTGGTCTCTTTTGTT 891
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 853 CAACAAGGATCTCTGTGATTCTGTGTGCTACGATCTACTCAGCTACTGGTCTCTTTTGTT 912
Query 892 ACCTTCTGTTTGGGGATTCCACTATGACAGATGTTTTAATGAACTTTGATCAAAGCACCA 951
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 913 ACCTTCTGTTTGGGGATTCCACTATGACAGATGTTCTAATGAACTTTGATCAAAGCACCA 972
Query 952 GTTCTTCCATTGGTTCATTACTAAATGACATTGTTAGACTCAGCTACGCGATTCACCTCA 1011
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 973 GTTCTTCGGTTGGTTCATTACTAAATGATATTGTTAGACTCAGCTACGCGATTCACCTCA 1032
Query 1012 TGCTTGTGTTTCCTCTGCTCAACTTCTCGCTTAGAGCCAACCTCGACGAACTCTTGTTCC 1071
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 TGCTCGTGTTTCCTCTGCTCAACTTCTCGCTTAGAGCCAACCTCGACGAACTCTTGTTCC 1092
Query 1072 CTATGAAGCTTTCTTTAGTGGAAGACAACAAAAGATTCTTTGGAATCACTTTTCCATTAC 1131
|||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 1093 CTATGAAGCTTTCTTTAGTGGAAGACAACAAAAGATTCTTCGCACTCACTTTTCCATTAC 1152
Query 1132 TGATATCTTGTTTCTTGGGTGCGATTGCAATACCGGACATTTGGTACTTCTTTCAGTTCT 1191
|||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 1153 TGATATCTTGTTTCTTGGGTGCAATTGCCATACCAGACATTTGGTACTTCTTTCAGTTCT 1212
Query 1192 TGGGATCAACTTCTACAGTCTCTATAGCATTCATCTTTCCAGCTGCAATTGTCCTAAGGA 1251
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1213 TGGGATCAACTTCTACAGTCTCTATAGCATTCATCTTTCCAGCTGCAATTGTCCTACGGA 1272
Query 1252 ATGTAAATGGTTTCTCGACTTTAAGAGAGAAGATTGTAGCTTCAGTAATGCTTGTTCTTG 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 ATGTAAATGGTTTCTCGACTTTAAGAGAGAAGATTGTAGCTTCAGTAATGCTTGTTCTTG 1332
Query 1312 CTGTTGCCACAAGTATCATCGCCATTTCCACAAATATATACACTTTCACAGCAACAGAAG 1371
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1333 CTGTTGCCACAAGTATCATCGCTATTTCGACAAATATATACACTTTCACAGCAACAGAAG 1392
Query 1372 AAACATGAAAAGCTTTCAGGAGTCCCTTCTCTTCAAGAATTTGTTAGATGGTAGCGAGCT 1431
|||||||||| |||||| ||||||| ||||||||||| |||||||||||||||| ||||
Sbjct 1393 AAACATGAAACGCTTTCTGGAGTCCTTTCTCTTCAAGGATTTGTTAGATGGTAG--AGCT 1450
Query 1432 TGTGTTGCATTTATTCGTATCTAT---ATGTAAAATAGGTTTGTAAGAAGTGTAGTGTTT 1488
|||||||||||||||| | ||||| ||||||||||||||||||||||||||| | | |
Sbjct 1451 TGTGTTGCATTTATTCATGTCTATTGTATGTAAAATAGGTTTGTAAGAAGTGTA-T-TAT 1508
Query 1489 AATAGCAACTTCAGGAAAAATGTGTGTAT 1517
|||||||||||||||||||||||||||||
Sbjct 1509 AATAGCAACTTCAGGAAAAATGTGTGTAT 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74849012595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5