BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483101
Length=863
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40435.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1232 0.0
> AT2G40435.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: transcription regulators (TAIR:AT3G56220.1); Has 289
Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr2:16886824-16888638
FORWARD LENGTH=932
Length=932
Score = 1232 bits (667), Expect = 0.0
Identities = 762/804 (95%), Gaps = 22/804 (3%)
Strand=Plus/Plus
Query 1 CACGAGATACAAATCGGAGTTGTCCGTATATTATATTTTGTAGCGATCAAGAGAGACTAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CACGAGATACAAATCGGAGTTGTCCGTATATTATATTTTGTAGCGATCAAGAGAGACTAA 60
Query 61 GGCAGACATGTGAGAGGGGAGAGGATCCTATAAACAATTTAA-TCTAAGATCTCTGCTTC 119
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 GGCAGACATGTGAGAGGGGAGAGGATCCTATAAACAATTTAAATCTAAGATCTCTGCTTC 120
Query 120 CTTCCT-CTCATATATATATTGCATATTTACACATAGTTCCTCTATATAGAAA-TCGATC 177
|| ||| |||||||||||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct 121 CT-CCTTCTCATATATATATTGCATATTTACACATAGTTCCTCTATACAGAAACT-GATC 178
Query 178 GAGAAAACTCACGAAACAAGAGGCTGATCAAAAGCATAGAAGAAGAATGGTTTCAAGGGA 237
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 179 GAGAAAACTCACGAAACAAGAGGCTAATCAAAAGCATAGAAGAAGAATGGTTTCAAGGGA 238
Query 238 ACAGAAGAGAGGTTCTTTGCAAGAGAAGTTTCAATTGCTTCGTTCAATCACTAATTCTCA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 239 ACAGAAGAGAGGTTCTTTGCAAGAGAAGTTTCAATTGCTTCGTTCAATCACTAATTCACA 298
Query 298 TGCTGAAAACGATACATCGATCATAATGGATGCATCAAAATATATCCAAAAGCTTAAGCA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGCTGAAAACGATACATCGATCATAATGGATGCATCAAAATATATCCAAAAGCTTAAGCA 358
Query 358 GAAAGTTGAAAGATTCAACCAAGACCCTACTGCAGAGCAATCTTCAAGCGAGCCCACGGA 417
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GAAAGTCGAAAGATTCAACCAAGACCCTACTGCAGAGCAATCTTCAAGCGAGCCCACGGA 418
Query 418 TCCGACTACACCAATGGTAACCGTGGAAACCCTAGAAAAGGGTTTTATGATAAACGTATT 477
||| | |||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 419 TCCAAAAACACCAATGGTAACAGTGGAAACCCTAGACAAGGGTTTTATGATAAACGTGTT 478
Query 478 CTCAGGGAAGAATCAGCCAGGGATGCTTGTTTCGGTATTAGAAGCCTTTGAGGATATTGG 537
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 479 CTCAGGAAAGAATCAGCCAGGGATGCTTGTTTCGGTATTAGAAGCCTTCGAGGATATTGG 538
Query 538 GCTTAACGTTCTTGAAGCTAGGGTTTCATGTACCGACTCCTTTAGCTTGCATGCCATGGG 597
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 539 GCTTAACGTTCTTGAAGCTAGGGCTTCATGTACCGACTCTTTTAGCTTGCATGCCATGGG 598
Query 598 ACTCGAGAATGAAGATGGAGAAAATATGGATGCTGAAGCAGTGAAACAGGCAGTGACAGA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 599 ACTCGAGAATGAAGATGGAGAAAATATGGATGCTGAAGCAGTGAAACAGGCAGTGACTGA 658
Query 658 TGCAATCAGGAGCTGGGGTGAAAGCAATGATCCACAGAACTAGATTGACCCACTTTT-AT 716
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 659 TGCAATCAGGAGCTGGGGTGAAATCAATGATCCACAGAACTAGATTGACCCACTTTTCAT 718
Query 717 TTATTTCTTAT-TATA-T--AT-----A-----CAAAATATAAGGAAATAACACAGTTTA 762
|| ||| |||| |||| | || | ||||||||||||||||||||||||||
Sbjct 719 TTTTTTTTTATATATAATTTATTTCTTATTATACAAAATATAAGGAAATAACACAGTTTC 778
Query 763 TATAGTATTTCTACtt-tt-tttt 784
|||||||||||| ||| || ||||
Sbjct 779 TATAGTATTTCTGCTTCTTCTTTT 802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42096215186
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5