BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483104
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40470.1 | Symbols: LBD15, ASL11 | LOB domain-containing pro... 1066 0.0
> AT2G40470.1 | Symbols: LBD15, ASL11 | LOB domain-containing protein
15 | chr2:16902304-16903652 REVERSE LENGTH=907
Length=907
Score = 1066 bits (577), Expect = 0.0
Identities = 650/684 (95%), Gaps = 9/684 (1%)
Strand=Plus/Plus
Query 76 ATGGCAGGAATTAGAAGACCAATGTCGGGTCCTCCCGGAACTCTCAACACCATTACGCCT 135
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 182 ATGGCTGGAATTAGAAGACCAATGTCGGGTCCTCCCGGAACCCTCAATACCATTACGCCT 241
Query 136 TGTGCTGCCTGCAAGCTTTTGCGCCGTAGATGTGCTCAAGAATGTCCCTTTTCACCATAT 195
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 242 TGTGCTGCCTGCAAGCTTTTGCGCCGTAGATGTGCTCAAGAATGTCCCTTTTCGCCATAT 301
Query 196 TTTTCCCCACACGAGCCTCATAAGTTCGCATCCGTCCACAAAGTCTTTGGAGCTAGCAAC 255
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 302 TTCTCCCCACACGAGCCTCATAAGTTCGCTTCCGTCCACAAAGTCTTTGGAGCTAGTAAC 361
Query 256 GTCTCCAAGATGCTAATGGAAGTACCTGAGAGCCAGAGAGCAGACGCCGCAAATAGCCTT 315
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 362 GTCTCCAAGATGCTAATGGAAGTACCTGAGAGCCAGAGAGCAGATGCCGCGAATAGCCTT 421
Query 316 GTGTATGAAGCAAACGTGAGGCTAAGAGATCCGGTGTACGGATGCATGGGAGCAATCTCA 375
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 422 GTGTATGAAGCAAACGTGAGGCTAAGAGATCCGGTGTACGGATGCATGGGAGCCATCTCA 481
Query 376 GCTCTACAACAACAAGTCCAAGCTTTACAAGCCGAGCTCACGGCCGTAAGATCAGAGATT 435
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 482 GCTCTACAACAACAAGTCCAAGCTTTACAAGCCGAGCTCACGGCCGTAAGATCCGAGATT 541
Query 436 CTTAAGTACAAGCAACGAGAAGCTGTCGCCACTTTGATCGTACCTTCCAACTCCCAAGTC 495
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 CTTAAGTACAAGCAACGAGAAGCTGTCGCCACTTTGATCGTACCTTCCAACTCCCAAGTT 601
Query 496 GCCGGATTTCACAACTCCGGTGGCGTCTCCGTCATTGCACCACCACCTCAAAGACCATCA 555
|||||||||||||||||||| || || |||||||||||||||||||| ||||||||| ||
Sbjct 602 GCCGGATTTCACAACTCCGGCGGTGTTTCCGTCATTGCACCACCACCACAAAGACCAACA 661
Query 556 ACTCCACCACAACCTACGACGGCTCATCCTCCTCCTCCATCTTCTTGTATTTTATCTCAA 615
||||||||||||||||| ||||||||||||||| |||||||||||||| |||| ||||||
Sbjct 662 ACTCCACCACAACCTACAACGGCTCATCCTCCTTCTCCATCTTCTTGTGTTTTCTCTCAA 721
Query 616 CCAACCACAAGAGCCTTAGAATACGGCGACATTGAAAGTGAGAACAACTCTTACTTCGGT 675
||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 722 CCAACCACAAGAGACTTAGAATACGGCAACATTGAAAGTGAGAACAACT---ACTTCGGT 778
Query 676 TAAATTTT-ACTTGTCTCATTCTACAAATACATACAAATACATATAATT--T--ATTTCG 730
|||||||| | |||| |||||||||||| |||||||||||||||||||| | ||||||
Sbjct 779 TAAATTTTTA-TTGTATCATTCTACAAACACATACAAATACATATAATTAATTTATTTCG 837
Query 731 ATAATTTGTGATCCGGTGACTAAT 754
||||||||||||||||||||||||
Sbjct 838 ATAATTTGTGATCCGGTGACTAAT 861
Score = 78.7 bits (42), Expect = 8e-14
Identities = 47/49 (96%), Gaps = 1/49 (2%)
Strand=Plus/Plus
Query 28 CTTTT-TCTTTGCGATTCTCTGAGAGCATGCCTGAATGTCAAGAGAAAG 75
||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 72 CTTTTCTCTTTGCGATTCGCTGAGAGCATGCCTGAATGTCAAGAGAAAG 120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36620693163
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5