BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483109
Length=587
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40530.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 590 6e-168
> AT2G40530.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex,
inflorescence meristem, petal, flower; EXPRESSED DURING:
4 anthesis, petal differentiation and expansion stage; Has 5
Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr2:16927502-16928208
FORWARD LENGTH=707
Length=707
Score = 590 bits (319), Expect = 6e-168
Identities = 452/510 (89%), Gaps = 34/510 (7%)
Strand=Plus/Plus
Query 1 CTACAATCTCTTCTTGAACCTAAAGACAACAAGAAGAAAGAATAATTTCATATAAA-T-T 58
|||||||||||||||||||||||||| ||||||||||||||| || |||||||||| | |
Sbjct 13 CTACAATCTCTTCTTGAACCTAAAGAAAACAAGAAGAAAGAAAAAATTCATATAAATTCT 72
Query 59 -TT-TA-------A-----AT-TT-AATGGATGCAAGGAAGATTAAGTTTGACGTTATAT 102
|| || | || || ||||||||||| |||||||||||||||||||||||
Sbjct 73 CTTATATTTTTTCACCTTTATATTGAATGGATGCAACGAAGATTAAGTTTGACGTTATAT 132
Query 103 TACTCTCATTCTTAC---TTCTTTCCGGAATTCCTTCCAATCTTGGGATGAGTA-AGAGT 158
||||||| ||||||| || | |||||||||||||| ||||||||| |||||| | |||
Sbjct 133 TACTCTCCTTCTTACTAATTATCTCCGGAATTCCTTCGAATCTTGGGTTGAGTACA-AGT 191
Query 159 ATGAGAGGCAATACTAGATCGGAGCCGGAAGCATTTCAAGGCGG-AAACTTCCCGGCAAT 217
||||||||| ||||||||||||||||||||| ||||| ||||| ||| |||||||||||
Sbjct 192 GTGAGAGGCACTACTAGATCGGAGCCGGAAGCCTTTCACGGCGGTAAA-TTCCCGGCAAT 250
Query 218 GAAGATCAGGAAGTTGATGGCAACAAATATGGAAGTTGATTATTCAAGTGACTATTATGA 277
|||||| ||||||||||||||| |||| ||||||||||||||||| ||||||||||||||
Sbjct 251 GAAGATGAGGAAGTTGATGGCACCAAACATGGAAGTTGATTATTCGAGTGACTATTATGA 310
Query 278 TGGAGGatcatcatcatcatcatcaacatcaccatcaCCACCAGTGCCTGATTATGATGA 337
||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||
Sbjct 311 TGGAGGATCATCATCATCA--A-CAACATCACCATCACCTCCAGTGCCTGATTATGATGA 367
Query 338 TATTTATAGAAGACAAGGTGATGTCCCAAGCCCTGGTATTGGCCACTGATC-ATACATCT 396
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 368 TATTTATAGAAGGCAAGGTGATGTCCCAAGCCCTGGTATTGGCCACTGATCCATACATGT 427
Query 397 CATGCGTGTATATACACATCCACATACACATTTTGTGTTAAATAT-TT-ATACATACAtg 454
||||||| |||| ||||| | | ||| |||||||||||||||||| || |||||||||||
Sbjct 428 CATGCGTATATACACACA-C-ATATAGACATTTTGTGTTAAATATATTTATACATACATG 485
Query 455 ttgtttatatatgtttttgtccttggaggt 484
||||||||| ||||||||||||||||||||
Sbjct 486 TTGTTTATA-ATGTTTTTGTCCTTGGAGGT 514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28231590614
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5