BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483110
Length=2569
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40540.1 | Symbols: KT2, ATKT2, SHY3, KUP2, ATKUP2, TRK2 | p... 4041 0.0
> AT2G40540.1 | Symbols: KT2, ATKT2, SHY3, KUP2, ATKUP2, TRK2 |
potassium transporter 2 | chr2:16930864-16934588 FORWARD LENGTH=2673
Length=2673
Score = 4041 bits (2188), Expect = 0.0
Identities = 2437/2559 (95%), Gaps = 10/2559 (0%)
Strand=Plus/Plus
Query 14 TCATCTCCATACACATCGATTCACGACACCCACCCAGAAAAATTCAAACTTTGAATCAAA 73
||| |||| |||||||||||||||| || ||||||||||||||||| || || ||| |||
Sbjct 122 TCA-CTCC-TACACATCGATTCACGTCATCCACCCAGAAAAATTCATAC-TTCAATTAAA 178
Query 74 AATTCT-TTTAGCGTGTTAGGCTGAAGATTGAAGAGTAACCATGGATCTTAATCTCGGAA 132
|||||| ||||||||||||||||||| ||| | || |||||||||||| ||||||||||
Sbjct 179 AATTCTCTTTAGCGTGTTAGGCTGAACATT-TA-AG-AACCATGGATCTCAATCTCGGAA 235
Query 133 AATGCTGTGGTTCTCGTTCTTCTAAGAAGGAATCATGGAGATCGGTTTTGCTTCTTGCTT 192
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 236 AATGCTGTGGTTCTCGTTCTTCTAAGAAGGAATCATGGAGGTCGGTTTTGCTTCTTGCTT 295
Query 193 ATCAGAGTCTTGGTGTTGTTTATGGAGACTTGAGTATCTCTCCGCTTTATGTCTTTAAGA 252
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 296 ACCAGAGTCTTGGTGTTGTCTATGGAGACTTGAGTATCTCTCCGCTTTATGTCTTTAAGA 355
Query 253 GCACTTTCGCTGAGGACATTCAACATTCAGAGACCAATGAAGAGATCTACGGTGTTATGT 312
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GCACTTTTGCTGAGGACATTCAACATTCAGAGACCAATGAAGAGATCTACGGTGTTATGT 415
Query 313 CCTTTGTTTTCTGGACTCTAACTTTGGTTCCTTTGCTTAAGTATGTCTTCATTGTCCTCC 372
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CTTTTGTTTTCTGGACTTTAACTTTGGTTCCTTTGCTTAAGTATGTCTTCATTGTCCTCC 475
Query 373 GAGCTGATGATAACGGAGAAGGTGGAACTTTTGCTTTGTACTCATTGATCTGCCGTCACG 432
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 476 GAGCTGATGATAACGGAGAAGGTGGAACTTTTGCTTTGTACTCATTGATCTGCCGTCATG 535
Query 433 TCAAAGTTAGCCTCCTCCCAAACCGACAAGTCTCTGATGAGGCACTGTCCACTTATAAGC 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TCAAAGTTAGCCTCCTCCCAAACCGACAAGTCTCTGATGAGGCACTGTCCACTTATAAGC 595
Query 493 TGGAGCATCCACCGGAGAAGAACCATGATTCGTGTGTGAAAAGATATCTCGAGAAGCACA 552
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 596 TGGAGCATCCACCGGAGAAGAACCATGACTCGTGTGTGAAAAGATATCTGGAGAAACACA 655
Query 553 AGTGGTTACACACTGCTTTGCTGCTTCTTGTTCTACTTGGGACTTGTATGGTCATTGGAG 612
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 656 AGTGGTTACACACTGCTTTGCTGCTTCTTGTTCTTCTTGGGACTTGTATGGTTATTGGAG 715
Query 613 ATGGACTTCTCACTCCAGCTATCTCCGTTTTCTCTGCTGTGTCAGGTCTTGAGCTGAATA 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATGGACTTCTCACTCCAGCTATCTCCGTTTTCTCTGCTGTGTCAGGTCTTGAGCTGAATA 775
Query 673 TGTCTAAAGAACATCACCAATATGCAGTAATTCCTATTACCTGCTTCATATTAGTCTGCC 732
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 776 TGTCTAAAGAACATCACCAATATGCAGTAATTCCTATTACCTGCTTCATACTAGTCTGCC 835
Query 733 TTTTCCCGCTTCAGCATTTTGGGACTCATCGTGTTGGGTTTGTTTTCGCGCCCATTGTCC 792
||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 836 TTTTCTCGCTTCAGCATTTTGGGACACATCGTGTTGGGTTTGTTTTCGCGCCTATTGTCC 895
Query 793 TCACTTGGCTGCTCTGTATAAGTGGTATTGGCTTGTACAATATAATACAGTGGAATCCTC 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TCACTTGGCTGCTCTGTATAAGTGGTATTGGCTTGTACAATATAATACAGTGGAATCCTC 955
Query 853 ATATTTACAAAGCTCTCTCTCCTACATACATGTTCATGTTCTTGAGAAAGACGAGAGTAA 912
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 ATATATACAAAGCTCTTTCTCCTACATACATGTTCATGTTCTTGAGAAAGACGAGAGTAA 1015
Query 913 GTGGATGGATGTCTCTAGGCGGGATTCT-GTTGTGTATAACTGGTGCTGAGGCCATGTTT 971
| ||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||
Sbjct 1016 GCGGATGGATGTCTCTAGGCGGGAT-CTTGTTGTGCATAACTGGTGCTGAGGCCATGTTT 1074
Query 972 GCTGATCTTGGTCACTTCAATTATGCAGCAATTCAGATTGCATTTACCTTCCTGGTTTAT 1031
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1075 GCTGATCTTGGTCACTTCAATTACGCAGCAATTCAGATTGCGTTTACCTTCCTGGTTTAT 1134
Query 1032 CCGGCTCTTATATTGGCATACATGGGGCAAGCTGCTTACTTATCCCGCCATCACCATTCT 1091
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1135 CCGGCTCTTATATTGGCATACATGGGGCAAGCTGCTTACTTATCCCGGCATCACCATTCT 1194
Query 1092 GCTCATGCGATTGGGTTTTACGTCTCTGTGCCAAAATGTTTGCACTGGCCTGTGCTTGCT 1151
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1195 GCTCATGCAATTGGGTTTTACGTCTCTGTACCAAAATGTTTGCACTGGCCTGTGCTTGCT 1254
Query 1152 GTAGCAATTCTTGCTTCTGTTGTGGGAAGCCAAGCGATCATCAGCGGGACTTTCTCCATT 1211
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1255 GTAGCAATTCTTGCTTCTGTTGTGGGAAGCCAAGCGATCATCAGTGGGACTTTCTCAATC 1314
Query 1212 ATAAATCAAAGCCAGTCTCTTGGATGTTTTCCTCGAGTCAAAGTCATTCACACCTCCGAT 1271
||||| || ||||||||||| ||||| || ||||||||||||||||||||||| ||||||
Sbjct 1315 ATAAACCAGAGCCAGTCTCTCGGATGCTTCCCTCGAGTCAAAGTCATTCACACGTCCGAT 1374
Query 1272 AAGATTCATGGTCAGATTTACATACCAGAGATTAACTGGATGCTCATGATTCTCTGCATC 1331
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1375 AAGATGCATGGTCAGATTTACATACCGGAGATTAACTGGATGCTCATGATTCTCTGCATC 1434
Query 1332 GCTGTTACTATCGGGTTTAGAGATGTAAAACACCTGGGAAATGCATCAGGTTTGGCTGTA 1391
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1435 GCTGTTACTATCGGGTTTAGAGATGTCAAACACCTGGGAAATGCATCAGGTTTGGCTGTA 1494
Query 1392 ATGGCGGTTATGCTAGTGACGACATGTCTTACCTCATTGGTCATTGTTCTTTGCTGGCAC 1451
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1495 ATGGCGGTTATGCTAGTGACAACATGTCTTACCTCATTAGTCATTGTTCTTTGCTGGCAC 1554
Query 1452 AAGCCTCCGATTCTAGCGCTCGCGTTCCTTCTCTTTTTCGGATCAATAGAACTTCTTTAC 1511
|||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 1555 AAGCCTCCAATTCTAGCGCTAGCGTTCCTTCTCTTTTTCGGTTCAATAGAACTTCTCTAC 1614
Query 1512 TTCTCGGCCTCACTCACCAAATTCCGTGAAGGCGCTTGGCTTCCCATCCTATTATCCCTA 1571
||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||
Sbjct 1615 TTCTCGGCCTCACTCACCAAATTTCGTGAAGGCGCTTGGCTTCCGATCCTCTTATCTCTA 1674
Query 1572 ATTTTCATGACCATCATGTTTGTTTGGCATTACACCACCATaaaaaaaTACGAGTTTGAT 1631
|| ||||||| ||||||||| |||||||| ||||||||||| || |||||||||||||||
Sbjct 1675 ATATTCATGATCATCATGTTCGTTTGGCACTACACCACCATTAAGAAATACGAGTTTGAT 1734
Query 1632 CTCCAGAACAAAGTCTCGCTTGAATGGCTTCTTGCACTGGGTCCAAGCCTCGGAATTACT 1691
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1735 CTCCAGAATAAAGTCTCGCTTGAATGGCTTCTTGCATTGGGTCCAAGCCTCGGAATTTCT 1794
Query 1692 CGAGTCCCCGGTATCGGTTTAGTCTTCACAGACTTAACCTCCGGAATCCCCGCCAATTTC 1751
||||| || |||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 1795 CGAGTTCCAGGTATCGGTTTAGTCTTCACGGATTTAACCTCTGGAATCCCCGCCAATTTC 1854
Query 1752 TCCCGGTTCGTCACCAACCTCCCTGCTTTCCACCGTGTTCTCGTTTTTGTCTGCGTGAAA 1811
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 1855 TCCCGGTTCGTCACCAACCTCCCTGCCTTCCACCGTGTTCTTGTCTTTGTCTGCGTGAAA 1914
Query 1812 TCTGTCCCTGTCCCATTTGTTCCGCCTGCTGAGAGATACCTTGTGGGCCGTGTTGGTCCT 1871
|||||||||||||| || ||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 1915 TCTGTCCCTGTCCCGTTCGTTCCACCTGCTGAGAGATACCTCGTGGGTCGTGTTGGTCCC 1974
Query 1872 GTTGACCACCGCTCTTACCGCTGCATCGTTCGGTATGGATACCGTGACGTCCATCAAGAC 1931
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1975 GTTGACCACCGCTCTTACAGATGCATCGTTCGGTATGGATACCGTGACGTCCATCAAGAC 2034
Query 1932 GTGGACTCATTCGAAACCGAGCTCGTGAGCAAGCTTGCGGATTTCATCCGTTACGACTGG 1991
||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||
Sbjct 2035 GTGGACTCATTCGAAACAGAGCTCGTAAGCAAGCTGGCGGATTTCATCCGTTACGATTGG 2094
Query 1992 CACAAAAGAACACAACAAGAAGAAGACAACGCTCGGTCAGTGCACTCCAACGAATCCTCA 2051
||||||||||||||||||||||| ||||||||||| || || || |||||||||||||||
Sbjct 2095 CACAAAAGAACACAACAAGAAGACGACAACGCTCGTTCTGTCCAGTCCAACGAATCCTCA 2154
Query 2052 AGCGAGTCAAGACTGGCCGTGATCGGAACCGTAGCTTACGAAATAGAAGACAATCTCCAA 2111
|||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 2155 AGCGAGTCAAGACTAGCCGTGATCGGAACAGTAGCTTACGAGATCGAAGACAATCTCCAA 2214
Query 2112 CCAGAGAGCGTCTCAATCGGATTCTCCACAGTCGAAAGCATGGAAGACGTCATACAAATG 2171
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2215 CCAGAGAGTGTCTCCATCGGATTCTCCACAGTCGAAAGCATGGAAGACGTCATACAAATG 2274
Query 2172 GCGGAAGCAGCCCCAACCGCCACCATAAGACGGGTGAGGTTTGCACTTGAGGAAAACAGT 2231
|| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2275 GCCGAACCAGCCCCAACCGCCACCATAAGACGGGTGAGGTTTGCGGTTGAGGAAAACAGT 2334
Query 2232 TACGAGGACGAAGGATCATCATCGTCTGCAGAGGCAGAGGCAGAACTGAGAAGCGAGCTG 2291
|||||||||||||||||| ||||||| ||||| ||||| || ||||||||||||||||||
Sbjct 2335 TACGAGGACGAAGGATCAACATCGTCAGCAGAAGCAGATGCGGAACTGAGAAGCGAGCTG 2394
Query 2292 CGGGATTTGCTGGCAGCGCAAGAAGCAGGGACGGCATTTATATTGGGACATTCACATGTA 2351
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 2395 AGGGATTTGCTGGCAGCGCAAGAAGCAGGAACTGCGTTTATATTGGGACATTCACATGTG 2454
Query 2352 AAAGCGAAACAAGGATCATCGGTGATGAAGAGATTGGCAGTTAATTTCGGTTATAATTTC 2411
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2455 AAAGCGAAACAAGGATCATCGGTGATGAAGAGATTAGCAGTTAATTTCGGTTATAATTTC 2514
Query 2412 TTGAGAAGAAACTGTAGAGGACCTGACGTGGCTCTTAAGGTTCCACCTGTTTCCCTTTTA 2471
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2515 TTGAGAAGGAACTGTAGAGGACCTGACGTGGCTCTTAAGGTTCCACCTGTTTCTCTTTTA 2574
Query 2472 GAAGTCGGCATGGTTTATGTTGTTTGACTTAT-AAAAAACTAAATATATGAAAACCTAAT 2530
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2575 GAAGTCGGCATGGTTTATGTTGTTTGACTTATGAAAAAACTAAATATATGAAAACCTAAT 2634
Query 2531 TCCTCTGTTGTAAATTCGTCATGTTTAGCTTCATAGATC 2569
|||||||||||||||||||||||||||||||||||||||
Sbjct 2635 TCCTCTGTTGTAAATTCGTCATGTTTAGCTTCATAGATC 2673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127524369106
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5