BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483113
Length=1665
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40570.1 | Symbols: | initiator tRNA phosphoribosyl transfe... 2483 0.0
> AT2G40570.1 | Symbols: | initiator tRNA phosphoribosyl transferase
family protein | chr2:16940835-16943492 FORWARD LENGTH=2001
Length=2001
Score = 2483 bits (1344), Expect = 0.0
Identities = 1511/1592 (95%), Gaps = 9/1592 (1%)
Strand=Plus/Plus
Query 80 AAACAATGGTTGCAAACTCAGAAGAACCGACAATGGCAACAAGAGACAGTATTTACAGAG 139
||||||||| |||||| |||||||| |||| ||| |||||||||| ||||| |||||||
Sbjct 227 AAACAATGGGTGCAAAATCAGAAGAGCCGATGATGACAACAAGAGATAGTATATACAGAG 286
Query 140 CTGCAA-GAAGTATAAAGCGACGAGACAACAGTCTCTACAACGCTCTTCGATCTATCTAC 198
|||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 CTGCAAGGAA-TATAAAACGACGAGACAACAGTCTCTACAACGCTCTTCGATCTATCTAC 345
Query 199 CAAGACTCCATCTTCGTCCACGAGATCTCTCAGCTTTGGCCTAAACTTCCTCTCGTTGCA 258
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 346 CAAGACTCCATCTTCGTCCACGAGATCTCTCTGCTTTGGCCTAAACTTCCTCTCGTTGCA 405
Query 259 AACCTTCGTTGTGGTCTCTGGTACTCTCCCAAA-TTCGACGCCACTTGCTACTTCAAATC 317
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 406 AACCTTCGTTGTGGTCTCTGGTACTCTGA-AAAGTTCGACGCCACTTGCTACTTCAAATC 464
Query 318 CACCGATGGTCATACCAACAATTTGTCCTTTAACACTTGTCGTCTCAATCTCCATCTTCC 377
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 465 CACCGATGGTCATACCAATAATTTGTCCTTTAACACTTCTCGTCTCAATCTCCATCTTCC 524
Query 378 TCTTCTCGCTGGAGAAAAAGGAGGATGTATCATTATTGATTCTACTCGGAAAGGAAAGCG 437
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 525 TCTTCTCGCTGGAGAAAAAGGAGGATGCATCATTATTGATTCTACTCGTAAAGGAAAGCG 584
Query 438 TTTTCCGGATAGCATGTCGAAAACGATACCTATATGGTCTTGTGTATTGAACCGTTCAAT 497
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 585 TTTTCCGGATAGCATGTCGAAAACGATACCTATGTGGTCTTGTGTAGTGAACCGTTCAAT 644
Query 498 AGTTAATCATTGGAAGAGATTATGTAACATTGATGCAGGTTTGACTAGTGATGATG--G- 554
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 645 ATTTAATCATTGGAACAGATTATGTAACATTGATGCAGGTTTGACTAGTGATGATGATGG 704
Query 555 TGAGAAGATAAGGGAATTGTTAGATAAAAGGGATTGTTCGTTACATCTACCACTATGGGT 614
||| || || ||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 705 TGATAACATCAGGAAATTGTTAGATAAATGGGATTGTTCGTTACATCTACCACTATGGGT 764
Query 615 TTCAAATACTGAGAGGGCCTCTATTGAAGCTAGATTGGATGAGTGGACAAGACAATTAGA 674
|||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 765 TTCAAATACTGAGAGGGCTTCTATTGAAGCTAGATTGGATGAGTGGACAAGAGAGTTAGA 824
Query 675 TGAGAGTGGAGCTGATATAGCTACTCTAGCTTCATCTTTGAGAAAACCTTTGCGGCCTCT 734
|||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||
Sbjct 825 TGAGAGTGGAGCTGATATAGCTTCTCTAGCTTCATGTTTGAGAAAACCTTTGCGTCCTCT 884
Query 735 TTGGGTTTCACAGAAAACTGTCATATGGTTGAATGAAGTACCTGAGCATGATTCATGGGA 794
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 885 TTGGGTTTCACAGAAAACTGTTATATGGTTGAATGAAGTACCTGAGCATGATTCATGGGA 944
Query 795 TTTCACACCTCTCGTTCTTGTCTCGGCTTCTGCTTCTGGTGAACTTCAAAACAGAACCAG 854
|||||||||||| | |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 945 TTTCACACCTCTTATCCTTGTCTCAGCTTCTGCTTCTGGTGAACTTCAAAACAGAACTAG 1004
Query 855 TTCAGAGTTTAGTTGGAATTATATTCCAGGAGCTGGTGATGATGAAGAAAGTTGGGCTAG 914
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1005 TTCAGAGTTTAGTTGGAATTATATTCCAGGGGCTGGTGATGATGAAGAGAGTTGGGCTAG 1064
Query 915 AGGTTTATCTCCAAATGTTTTTTGGACACATGTTGATGATCTT-ATTCACTCGGGGCCTG 973
||||||||| |||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 1065 AGGTTTATCCCCAAATGTTTTTTGGACACATGTTGATGAT-TTGATTCACTCAGGGCCTG 1123
Query 974 ACTTGTGTAACCAGAAAGTTGCAGAGATTGTTGAAAACGATAGAGTGTATCGAGCGCAGA 1033
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1124 ACTTGTGTAACCAGAAAGTTGCAGAGATTGTTGAAAACGATAGAGTGTATCGAGCGCATA 1183
Query 1034 GAGGTCATGAAGCTCCTCAGGTTGTTGTCAAATGCTCAAAATCTAATGGTGGAGTCAATC 1093
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 GAGGTCAAGAAGCTCCTCAGGTTGTTGTCAAATGCTCAAAATCTAATGGTGGAGTCAATC 1243
Query 1094 ACGCTAAGAGTGGTGAAATCATATCTCTTACTGCACAAAAACCTAAAGTTGATGAAGAAA 1153
|||||||||||| ||||||| ||| ||||| |||||||| ||| ||||||||||||||||
Sbjct 1244 ACGCTAAGAGTGATGAAATCTTATGTCTTAGTGCACAAATACCGAAAGTTGATGAAGAAA 1303
Query 1154 GTTTAGTATTTTGGTCGGCATCAACAAATCTTGCTGTTGGAGCATCACAAGTAGCTGGTA 1213
| ||||||||||||| | ||||||| |||||||||||||| ||||||||||||||| |||
Sbjct 1304 GATTAGTATTTTGGTTGTCATCAACGAATCTTGCTGTTGGTGCATCACAAGTAGCTTGTA 1363
Query 1214 AGGTGACATCAATTGACTGCATATTAAATTGTGATCAAAACCCCGTCTCAGTCCCTGTAT 1273
||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1364 AGGAGACATCAATTGACTGCATATTAAATTGTGATCAAAATCCTATCTCAGTCCCTGTAT 1423
Query 1274 CATATCTTGAAGAGTATTTGCATCTACCCATGAAGGGTTCAAAATTTGATAGATTTTCTA 1333
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 CATATCTTGAAGAGCATTTGCATCTACCCATGAAGGGTTCAAAATTTGATAGATTTTCTA 1483
Query 1334 TATCAAGAAATCTTCGTTCCGCGGTTAATTTTGCTAAGCTCAAGATGAGTTCAGGGAAGA 1393
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 TATCAAGAAATCTTCCTCCCGCGGTTAATTTTGCTAAGCTCAAGATGAGTTCAGGGAAGA 1543
Query 1394 AAGTCTTAGTTTGTTGTCAAGATGGGGAAGATATCAGTATATGTGTTTGTTTGGCCATCT 1453
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1544 AAGTCTTGGTTTGTTGTCAAGATGGGGAAGATATCAGTATATGTGTTTGCTTGGCCATCT 1603
Query 1454 TGATGTCATTATTCAATGAAGAAGGGGACTTTGATGGTGGAAAATCCTTTGAAGAGAAGA 1513
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1604 TGATGTCATTATTCAATGAAGAAGGGGCCTTTGATGGTGGAAAATCCTTTGAAGAGAAGA 1663
Query 1514 GTATAACAAAAATGGATTTGCGACGGATGCTAATATTTATATGCAAATACGCTGTGAATG 1573
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1664 GTATAACAAAAATGGATATGCGACGGATGCTAATATTTATATGCAAATACGCGGTGAATG 1723
Query 1574 CTCGACCATCTAGAGGCAATCTAAAGCAAGTTTTTGGTTTTCTCTCGTCTCAGCGGGAAA 1633
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1724 CTCGACCATCTAGAGGCAATCTAAAGCAAGTTTTTGGTTTTCTCTCGTCTCACCGCGAAA 1783
Query 1634 ATTCAGACTAGTAAAGTAGAAAAATGCTCCAT 1665
|||||||| ||| |||||||||||| ||||||
Sbjct 1784 ATTCAGACGAGTGAAGTAGAAAAATCCTCCAT 1815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82278693255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5