BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483115
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40580.1 | Symbols: | Protein kinase superfamily protein | ... 1109 0.0
> AT2G40580.1 | Symbols: | Protein kinase superfamily protein
| chr2:16943864-16945003 FORWARD LENGTH=1140
Length=1140
Score = 1109 bits (600), Expect = 0.0
Identities = 721/777 (93%), Gaps = 18/777 (2%)
Strand=Plus/Plus
Query 1 TTCTAACCaaaaaaaTACAGAATTAAGTTTAATTTGCTAACCAAAAGAAGTCTTCATTGG 60
|||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 6 TTCTAACCAAAAAAATACAGAA-CAAG--T--TTTGCTAACCAAAAGAAGTCTTCATTGG 60
Query 61 AGACTGTCTGTGTTCTTGACTTCTTGGCAACCTAG--TC-TCGTCACTATGGATATTATC 117
|||| |||||||||| | | |||||||||| || || |||||||||| ||||||
Sbjct 61 AGACAGTCTGTGTTC-T-A------GGCAACCTAGTCTCATCATCACTATGGAGATTATC 112
Query 118 GAAGATCTAAAAGAGTCTTCATTGCAGACTGTCAATGTTCTTGGCAAATTAGGTCCCTTC 177
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||
Sbjct 113 GAAGATCTAAAAGAGTCTTCATTGGAGACTGTCAGTGTTCTTGGCAAATTAGGTACCTTC 172
Query 178 GGCTTTGTGTCTCTCCAGAATGATACAAACTTGGGGAAATCATACGTCAAGAAGACAAGT 237
||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||
Sbjct 173 GGCTTTGTGTCTCTCCAGAGTGATTCAAACTTAGGGAAATCATACGTCAAGAAGACAAGT 232
Query 238 ATTCTCGAACAGTCCAAGAATTTGGAGAAGGAGCTCAGAATCATGCTTCGTTTTCACAAC 297
| ||||||||||||||||||| | |||||||||||||| |||||||||||||| ||||||
Sbjct 233 ACTCTCGAACAGTCCAAGAATCTCGAGAAGGAGCTCAGGATCATGCTTCGTTTCCACAAC 292
Query 298 AATCCCTTCATCGTTCGAGCTTCAAGCGATCATCTTCACTTCGTGACCAACACAAAAAGC 357
||||||||||| || |||||||||||||||||||||||||| | ||| ||||| ||||||
Sbjct 293 AATCCCTTCATAGTCCGAGCTTCAAGCGATCATCTTCACTTTGCGACTAACACCAAAAGC 352
Query 358 ATGAGTTTGTGTTACATCTACATGGAGTATGCTTCCTTAGGGAATCTCAACAAGATGATC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 ATGAGTTTGTGTTACATCTACATGGAGTATGCTTCCTTAGGGAATCTCAACAAGATGATC 412
Query 418 TCTGATGCCGGAGGGAGATTGCCTGAAGATAGTGTCAGACGTGCCACACGTATGATCCTA 477
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 413 TCTGATGCCGGAGGGAGATTGTCTGAAGATAGTGTCAGACGTGCCACTCGTATGATCCTA 472
Query 478 CAAGGACTCAAGGCTCTTCACTCTGAAGGTTACGTCCACTGCGACCTCAAGCCATCAAAT 537
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 473 CAAGGACTCAAGGCTCTTCACTCTGAAGGTTTTGTCCACTGCGACCTCAAGCCATCAAAT 532
Query 538 GTACTTGTGTTCCCTTCCAACACTCTTGGCGAGCCATGGGATCTCAAGCTTGCTGGTTTC 597
|||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct 533 GTACTTGTCTTCCCTTCCAACACACGTGGAGAGCCATGGGATCTCAAGCTTGCTGGTTTC 592
Query 598 TGTTTATCCAAAGAGCCTACTATGGATTATAAACT-GTTGTTTCCTGGAACCCTTGAGGA 656
||||||||||||||||||||||||| | || || ||||||||||||||||||||||||
Sbjct 593 GGTTTATCCAAAGAGCCTACTATGGACTCTAG-CTTGTTGTTTCCTGGAACCCTTGAGGA 651
Query 657 GTACATGCCACCTGAGGCCATTGAGCGGGACAGGTTTGTTGGGCAGGACAAACTGATCGG 716
||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 652 GTACATGTCGCCTGAGGCCATTGAGCGGGACAGGTTTGTTGGGAAGGACAAACTGATCGG 711
Query 717 ACCAGCCTGTGATATATGGTCTCTAGGACGTATTGTTCTTAGGATGTTTGGGGATAT 773
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 712 ACCAGCCCGTGATATATGGTCTCTAGGACGTATTGTTCTTAGGATGTTTGGGGGTAT 768
Score = 399 bits (216), Expect = 2e-110
Identities = 274/301 (91%), Gaps = 7/301 (2%)
Strand=Plus/Plus
Query 769 GATATCTCTCCGGACGCCACAGAC-TTCTTGAGGAGGTGCTTGGCTTGGCGCCCTTCAAA 827
|||||||||||||| ||||||||| || || ||| |||||||||| ||||||||||| ||
Sbjct 812 GATATCTCTCCGGAGGCCACAGACTTTGTT-AGGCGGTGCTTGGCATGGCGCCCTTCGAA 870
Query 828 TCGGGCCACCGTGGATGAGCTCTTAGACCATCCTTTTGCTGCTGAAAAACTTCCATTTCT 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 871 TCGGGCCACCGTGGATGAGCTCTTAGACCATCCTTTTGCTGCTGAAAAACTTCCATTGCT 930
Query 888 TCTTTCTTTCTTAAGGGTTCCTTCTTTTATAAGAAGGATTGCCA-TGGAAAAATTGTATG 946
||||||||||||||||||||||||||| ||||||||| || || || |||||||| |||
Sbjct 931 TCTTTCTTTCTTAAGGGTTCCTTCTTTCGTAAGAAGGAATGTCAATG-AAAAATTGAATG 989
Query 947 TTAGACATGAAGAACTGATTCCAAAACCTCAAGGGTTGCTCTGGTGATAAGAAAATGAA- 1005
||||||| ||||||||||||||||| |||||||| |||||||||||| |||||||||||
Sbjct 990 TTAGACAAGAAGAACTGATTCCAAAGCCTCAAGGCTTGCTCTGGTGACAAGAAAATGAAG 1049
Query 1006 ACTGAA-TGTAAGAACCGAAACTGAACGCCTACTGTTTGCAATTTCTCTTCTAATTCTCA 1064
|| ||| | || ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1050 ACAGAAAT-TATGAACCGAAACTAAACGCCTACTGCATGCAATTTCTCTTCTAATTCTCA 1108
Query 1065 A 1065
|
Sbjct 1109 A 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5