BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483116
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40590.1 | Symbols: | Ribosomal protein S26e family protein... 857 0.0
AT2G40510.1 | Symbols: | Ribosomal protein S26e family protein... 651 0.0
> AT2G40590.1 | Symbols: | Ribosomal protein S26e family protein
| chr2:16945045-16946419 REVERSE LENGTH=640
Length=640
Score = 857 bits (464), Expect = 0.0
Identities = 551/592 (93%), Gaps = 10/592 (2%)
Strand=Plus/Plus
Query 33 GAGAACAGAGGAAAAGCCAAAGATGACTTTCAAGCGTAGGAACGGTGGAAGGAACAAGCA 92
||||| ||||||| |||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 53 GAGAAGAGAGGAATAGCCAAAGATGACTTTCAAGCGAAGGAACGGTGGGAGGAACAAGCA 112
Query 93 CAACAGAGGTCACGTCAAGCCAATCAGATGCTCCAACTGTGGCAAATGTTGTCCC-AAGG 151
||||||||| |||||||| |||||||||||||||||||| |||||||| || ||| ||||
Sbjct 113 CAACAGAGGACACGTCAACCCAATCAGATGCTCCAACTGCGGCAAATGCTG-CCCTAAGG 171
Query 152 ATAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATG 211
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 ACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATG 231
Query 212 TTCAGGAAGCTAGCGTCTACGAGGGATACACGTTACCGAAGCTATATGCAAAGACGCAAT 271
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 232 TTCAGGAAGCTAGCGTCTATGAGGGATACACATTGCCGAAGCTATATGCAAAGACGCAAT 291
Query 272 ACTGTGTCTCCTGTGCTATCCACTCTCACGTCGTTAGAGTCCGATCCCGCACCAACCGTA 331
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 292 ACTGTGTCTCCTGTGCTATCCACTCTCACGTCGTTAGAGTCCGTTCCCGCACCAACCGTA 351
Query 332 GGGTTCGTACTCCTCCACCTCGTTTCGCCAGACGCAAGGAGGATACTCCCAAGCCTGGGC 391
|||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |
Sbjct 352 GGGTTCGTACTCCTCCTCCACGTTTCACCAGACGCAAGGAGGATACTCCCAAGCCTGGAC 411
Query 392 AACCAGGACAGGCCCCTCGTCCAGCTGGACCTGGAGCTGCAGCTGCACCGCGTGTCTGAA 451
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 412 AGCCAGGACAGGCCCCTCGTCCAGCTGGGCCTGGAGCTGCAGCTGCACCGCGTGTCTGAA 471
Query 452 GCCTGCAATCAGCTTGAATTGTAGtttcatttttcaagatttttgtttttCTTATGTTTG 511
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 472 GCCTGCAATCAGCTTAAATTGTAGTTTCATTTTTCAAGATTTTTGTTTTTCTTATGTTGG 531
Query 512 CTTCAGATTATATTCCCATGTGAATCTCCAAATGCTGtttttttt----AA-TAAACGTC 566
||||||||| | || || ||||||||||| ||| | |||||||| || |||| |||
Sbjct 532 CTTCAGATTTTGTTTCCTTGTGAATCTCCTTATGTTTTTTTTTTTTTTCAAATAAATGTC 591
Query 567 TCGACTTTGTTATTATTATATATGTAAACCTCTATAGTTTTGCAATCTGCTT 618
||||||||||||||||||||||| ||||||| ||||||||||||| |||||
Sbjct 592 TCGACTTTGTTATTATTATATAT--AAACCTC-ATAGTTTTGCAATTTGCTT 640
> AT2G40510.1 | Symbols: | Ribosomal protein S26e family protein
| chr2:16918433-16919888 FORWARD LENGTH=740
Length=740
Score = 651 bits (352), Expect = 0.0
Identities = 431/467 (92%), Gaps = 13/467 (3%)
Strand=Plus/Plus
Query 3 GTAAACCCTAGCAGCAAGTCCATCGACATCGAGAACAGAGGAAAAGCCAAAGATGACTTT 62
||||||||||||||| || || | ||| |||| || || ||| | |||||||||||
Sbjct 29 GTAAACCCTAGCAGC-AG-ACA-CAACA-CGAGTTCA-TCGAGAAG-C-AAGATGACTTT 81
Query 63 CAAGCGTAGGAACGGTGGAAGGAACAAGCACAACAGAGGTCACGTCAAGCCAATCAGATG 122
|||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 82 CAAGCGAAGGAACGGTGGGAGGAACAAGCACAACAGAGGACACGTCAACCCAATCAGATG 141
Query 123 CTCCAACTGTGGCAAATGTTGTCCCAAGGATAAGGCCATTAAGAGGTTCATTGTGAGGAA 182
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 142 CTCCAACTGTGGCAAATGTTGCCCCAAGGACAAGGCCATTAAGAGGTTCATTGTGAGGAA 201
Query 183 CATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTACGAGGGATACAC 242
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 202 CATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGGATACAC 261
Query 243 GTTACCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCACTCTCACGT 302
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 262 ATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCACTCTCATGT 321
Query 303 CGTTAGAGTCCGATCCCGCACCAACCGTAGGGTTCGTACTCCTCCACCTCGTTTCGCCAG 362
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 322 CGTTAGAGTCCGTTCCCGCACCAACCGCAGGGTTCGTACTCCTCCACCTCGTTTCGCCAG 381
Query 363 ACGCAAGGAGGATACTCCCAAGCCTGGGCAACCAGGACAGGCCCCTCGTCCAGCTGGACC 422
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 382 ACGCAAGGAGGATACTCCCAAGCCTGGGCAACCAGGACAGGCACCTCGTCCTGCTGGACC 441
Query 423 TGGAGCTGCAGCTGCA-C--C---GCGTGTCTGAAGCCTGCAATCAG 463
|||||||||||||||| | | ||||||||||||||| ||| |||
Sbjct 442 TGGAGCTGCAGCTGCAGCTGCACCGCGTGTCTGAAGCCTTCAAGCAG 488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29788849171
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5