BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483117
Length=827
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40600.1 | Symbols: | appr-1-p processing enzyme family pro... 1033 0.0
> AT2G40600.1 | Symbols: | appr-1-p processing enzyme family protein
| chr2:16946870-16948561 REVERSE LENGTH=940
Length=940
Score = 1033 bits (559), Expect = 0.0
Identities = 718/792 (91%), Gaps = 21/792 (3%)
Strand=Plus/Plus
Query 1 ACGACTCAAATGAGACGACTATGGTTGACCTGTGGAGTCTTGAGTCTCCTCCCTAGATTA 60
||||||||||||||||||| ||||||||||| |||| ||| ||| | |||||| |||||
Sbjct 16 ACGACTCAAATGAGACGACAATGGTTGACCTCTGGACTCTCGAG--T-CTCCCTGGATTA 72
Query 61 CTTCACTCGAGCT---CGATCCTTAGACCAACTTCG---TCTTCCTCGAGAGCTTCTCTG 114
|| |||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 73 CTACACTCGAGCTCGACGATCCTTAGACCAACTTCGTCTTCTTCCTCGAGAGCTTCTCTG 132
Query 115 AGCTCCGCCACCTCCTTCGTCGCTTCTTCTTCG-TCTAC-TCTCTCTTC-TCCTACGAGG 171
| |||| | | | || | ||| | || || | ||| ||||| | ||||
Sbjct 133 ATCTCCTTC-GC-CGTTAATAATTTCCAC-ACGATC-GCTTCT-TCTTCGT-CTACTCTC 186
Query 172 ACTTCTCGCTTGACAACTGTATCA---TCCATGGCTTCTAAAGACGAAGGAGCTGTTTTT 228
||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 187 TCTTCTCGCTTGACAACTGTATCATCGTCCATGGCTTCTGGTGACGAAGGAGCTGTTTTC 246
Query 229 AATTTGTCAGATTCTAGCCTTCTTAAGATTCTTAAAGGAGACATCACCAAGTGGTCCGTT 288
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 247 AATTTGTCTGATTCTAGCCTTCTTAAGATCCTTAAAGGAGACATCACCAAGTGGTCTGTT 306
Query 289 GATTCCTCCTCCGATGCTGTTGTCACTCCAGCAAATGAGCGTATGTTAGGTGGTGGTGGT 348
||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 307 GATTCTTCCTCCGATGCTATTGTCAATCCAGCAAATGAGCGTATGTTAGGTGGTGGTGGT 366
Query 349 GCTGATGGAGCAATACATAGAGCTGCTGGGCCACAACTCAGAGCTGCATGCTATGAGGTT 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 GCTGATGGAGCAATACATAGAGCTGCTGGGCCACAACTCAGAGCTGCATGCTATGAGGTT 426
Query 409 CCTGAAGTTCGTCCTGGAGTCCGTTGTCCAACCGGAGAAGCAAGAGTTACTCCGGGTTTT 468
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 427 CCTGAAGTTCGTCCTGGAGTCCGTTGTCCAACTGGAGAAGCAAGAATTACTCCGGGTTTT 486
Query 469 AACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCGATCTATGACTCTGATGTCAAC 528
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 487 AACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCTATCTATGACTCAGATGTCAAC 546
Query 529 CCTCAAGAATCCCTCACAAATGCTTACAAAAATAGTCTGAGAGTTGCAAAGGAAAACAAC 588
||||||||||| ||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 547 CCTCAAGAATCTCTCACCAATTCGTACAAAAATAGTCTGAGAGTTGCAAAGGAAAACAAT 606
Query 589 ATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGGATATCCTTTTGATGAA 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 ATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGGATATCCTTTTGATGAA 666
Query 649 GCTGCTGCGATCGGTATATCAACCATCAAACAGTTCTCTAATGACTTTAAAGAGGTACAT 708
||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||| |||
Sbjct 667 GCTGCTGCGATAGGTATTTCAACCATCAAACAATTCTCTACTGACTTTAAAGAGGTGCAT 726
Query 709 TTTGTTTTGTTCGCTGACGATATATTCAGTGTGTGGGTAAACAAAGCAAAGGAGGTGCTA 768
|||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 727 TTTGTTTTGTTCGCGGACGACATATTCAGCGTATGGGTAAACAAAGCAAAGGAGGTGCTA 786
Query 769 CAAAAAGCCTAA 780
||||||||||||
Sbjct 787 CAAAAAGCCTAA 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40287785894
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5