BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483119
Length=1469
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40620.1 | Symbols: | Basic-leucine zipper (bZIP) transcrip... 2255 0.0
> AT2G40620.1 | Symbols: | Basic-leucine zipper (bZIP) transcription
factor family protein | chr2:16954541-16956978 REVERSE
LENGTH=1473
Length=1473
Score = 2255 bits (1221), Expect = 0.0
Identities = 1395/1476 (95%), Gaps = 24/1476 (2%)
Strand=Plus/Plus
Query 1 TCTCCCTGTCTCTCTCTTTCGCTGTCCGATTCCGACAGATAGACAG-GGG-AAG-AAGAG 57
|||| || |||||||||||||||||||||||||||||||||||||| ||| | || ||
Sbjct 14 TCTCTCTCTCTCTCTCTTTCGCTGTCCGATTCCGACAGATAGACAGAGGGCGCGAAACAG 73
Query 58 GGCGCGAAACAGAGAAAAAGATAGAGGACGATCCAGATATGGAGGATCCTTCTAACCCAA 117
| | ||| | |||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 74 AGAG-AAAATA-AGAAGAAG--A-AGGACGATCCAGATATGGAGGATCCTTCTAACCCAC 128
Query 118 AATCAAACCAGAGCAATCTCTCACAATGCCCGCCTTTAGCCACAGCTCCGACGCCGGCGC 177
|| ||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 129 AACCAAACCAGAGCAATCTCTCGCAATGCCCGCCTTTAGCCACAGCTCCGACACCTGCGC 188
Query 178 CATTTCGTGGTCCGTACCACCGGAGAGCACATTCGGAGGTTCAATTCCGTCTCCCTGAAG 237
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 189 CAGTTCGTGGTCCGTACCACCGGAGAGCACATTCGGAGGTCCAATTCCGTCTCCCTGAAG 248
Query 238 ATCTGGATCTCTCTGAACCATTCGGAGGATTCGACGAGCTTGGATCCGAAGATGACCTCT 297
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 249 ATCTGGATCTCTCTGAACCATTCGGAGGATTCGATGAGCTTGGATCCGAAGATGATCTCT 308
Query 298 TTTGCTCATACATGGATATTGAGAAACTTGGATCCGGATCCGGATCCGCATCCGATTCGG 357
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TTTGCTCATACATGGACATTGAGAAACTTGGATCCGGATCCGGATCCGCATCCGATTCGG 368
Query 358 CTGGTCCATCTGCTCCTAGGTCCGATAACCCGTTTTCCGCTGACAACGGAGGCGCGGAGG 417
||||||| |||||||||||||| |||||||||||||||||||| || ||||| |||||||
Sbjct 369 CTGGTCCTTCTGCTCCTAGGTCTGATAACCCGTTTTCCGCTGAGAATGGAGGTGCGGAGG 428
Query 418 CTGGAAATTCAAGACCTAGACACAGGCACAGCCTCTCCGTTGATGGCTCTTCGACTTTGG 477
|||| ||||| |||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 429 CTGGGAATTCGAGACCTCGACACAGGCATAGCCTCTCCGTTGATGGCTCTTCGACTTTGG 488
Query 478 AATCAATTGAGGCTAAGAAAGCTATGGCTCCTGATAAACTCGCTGAGCTTTGGGTCGTCG 537
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 489 AGTCAATTGAGGCTAAGAAAGCTATGGCTCCTGATAAGCTCGCTGAGCTTTGGGTCGTCG 548
Query 538 ACCCTAAGAGAGCTAAAAGGATAATTGCTAATCGACAGTCTGCTGCTCGTTCGAAAGAGA 597
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 ACCCTAAAAGAGCTAAAAGGATAATTGCTAATCGACAGTCTGCTGCTCGTTCGAAAGAGA 608
Query 598 GGAAGGCTCGGTATATCTTGGAGCTAGAGAGGAAAGTCCAGACCTTGCAAACTGAAGCTA 657
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 609 GGAAGGCTCGGTATATCTTGGAGCTCGAGAGGAAAGTTCAGACCTTGCAAACTGAAGCTA 668
Query 658 CTA-CCTTATCAGCACAATTGTCTTTGTTCCAGAGAGACACAACTGGTTTGTCATCTGAG 716
||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CTACCCTT-TCAGCACAGTTGTCTTTGTTCCAGAGAGACACAACTGGTTTGTCATCTGAG 727
Query 717 AATACAGAGCTCAAGCTTCGTTTACAGGTCATGGAACAACAAGCTAAGTTGCGAGATGCA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 AATACAGAGCTCAAGCTTCGTTTACAGGTCATGGAACAACAAGCTAAGTTGCGAGATGCA 787
Query 777 CTGAACGAGCAACTGAAAAAGGAAGTTGAGAGGCTGAAATTTGCCACGGGAGAAGTCTCA 836
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 788 CTGAACGAGCAACTGAAAAAGGAAGTTGAGAGGCTGAAATTCGCCACGGGAGAAGTCTCA 847
Query 837 CCCGCTGATGCTTATAACCTCGGAATGGCACACATGCAATATCAGCATCAACCACAACAA 896
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 848 CCCGCGGATGCTTATAACCTCGGAATGGCACACATGCAATATCAGCAACAACCACAACAA 907
Query 897 TCCTTCTTTCAACATCATCA---GCAACAAACAGATGCTCAAAACCTGCAACAAATGACT 953
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 908 TCCTTCTTTCAACATCATCATCAGCAACAAACCGATGCTCAAAACCTGCAACAAATGACT 967
Query 954 CATCAGTTTCATCTCTTCCAGCCCAACAACAACCAAAACCCGAACTCATCCTCTCGCTCA 1013
||||||||||||||||||||||| ||||||||||| |||| || || | |||||| ||
Sbjct 968 CATCAGTTTCATCTCTTCCAGCCTAACAACAACCAGAACC--AA-TC-T--TCTCGCACA 1021
Query 1014 AACCCTCCCACCGCTCATCAGCTTATGCATCACGCTACTTCTAATGCCCCGGCTCAATCT 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 AACCCTCCCACCGCTCATCAGCTTATGCATCACGCTACTTCTAATGCCCCGGCTCAATCT 1081
Query 1074 CATTCCTATTCAGAGGCAATGCATGAAGACCCTCTTGGCCGGTTACAGGGGCTTGACATT 1133
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1082 CATTCCTATTCAGAGGCAATGCATGAAGACCATCTTGGCCGGTTACAGGGGCTTGACATT 1141
Query 1134 AGCAGCTGTGGCAGAGGCTCAAACTTTGGTAGGTCTGACACCGTCAGTGAAAGTAGCAGC 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1142 AGCAGCTGTGGCAGAGGCTCAAACTTTGGTAGGTCTGACACCGTCAGTGAAAGCAGCAGC 1201
Query 1194 ACCATGTGAGGCTGCATTTCCCAGATTCCGCTTTGTCGATAAACCTATTCTTTTGCTCTC 1253
|| |||||||||||| ||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 1202 ACTATGTGAGGCTGCCTTTCCCAGATTCCCCTTTGTCGATAAACCTATTCTTTCGCCCTC 1261
Query 1254 CCTTGAAATCTTTAGCTAAAAAGGTAACATCTTCGTGACAGTCTGATTCATTTTTTATTC 1313
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1262 CCTTGAAATCTTTAGCTAAAAAG-TAACATCTTCGTGACAGTCGGATTCATTTTTTATTC 1320
Query 1314 TGTAAAACTGGTTTCTTTTTGGGGGTTTTGGGGTTTCAACTATAGAGACCACAGGTGTTT 1373
|||||||||||||| ||| ||||||||||||||||||||| |||||||||||| |||||
Sbjct 1321 TGTAAAACTGGTTT-TTTG-GGGGGTTTTGGGGTTTCAACTTTAGAGACCACAGTTGTTT 1378
Query 1374 TAACTTGTCTGATTTCTCTGTTTCCTGATTCATCTTGTTCTTCGAGGGGAGCTACTGAAG 1433
|||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||
Sbjct 1379 TAACTTGTCTGATTTCTCA-TTTCCTGATTCATCTTGTTCTCCT-GGGGAGCTACTGAAT 1436
Query 1434 TATAAACAGATCATATTTCTGTTTCTTTATGTTGTC 1469
||||||||||||||||||||||||||||||||||||
Sbjct 1437 TATAAACAGATCATATTTCTGTTTCTTTATGTTGTC 1472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72439386435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5