BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483120
Length=1971
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40630.1 | Symbols: | Uncharacterised conserved protein (UC... 2579 0.0
> AT2G40630.1 | Symbols: | Uncharacterised conserved protein (UCP030365)
| chr2:16958146-16961144 FORWARD LENGTH=2106
Length=2106
Score = 2579 bits (1396), Expect = 0.0
Identities = 1736/1891 (92%), Gaps = 59/1891 (3%)
Strand=Plus/Plus
Query 106 ATTCGACATCTGGG-TTTTGGAAAAGAGAGATCTTTCTGGTGTGTAAATGGAGGAACAGA 164
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 ATTCGACATCTGGGTTTTTGGAAAAGAGAGATCTTTCTGGTGTGTAAATGGAGGAACAGA 309
Query 165 GAGGAATTTCCTCTGCG-GTTGTGTCGGAACCTGCATCGAGTTCTGGGATTTCTGGCGAG 223
||||||||||||||| | |||||||||||||||||||||| ||||| |||||||||||||
Sbjct 310 GAGGAATTTCCTCTG-GTGTTGTGTCGGAACCTGCATCGAATTCTGTGATTTCTGGCGAG 368
Query 224 AAGCGTAACGGATATGGATTAGTA-GAGAAAGATGAATTAGGGTCTAAACGTGTGAAAGT 282
|||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 369 AAGCGTAACGGAAATGGATTAG-ATGAGAAAGATGAATTAGGGTCTAAACGTGTGAAAGT 427
Query 283 CCCAGATCTAGCTTCTGATGCGAAAAACAGTAATCTGCAATCTCATGGAAACAGTAAAAG 342
||||||||| |||||||||||||||| ||||| | |||||||||||||||||||||| ||
Sbjct 428 CCCAGATCTGGCTTCTGATGCGAAAACCAGTAGTTTGCAATCTCATGGAAACAGTAATAG 487
Query 343 TGTTCAGCAACCAAATCTTAGTAGTGAAAAGTTGTCGAAATTATCTGAAA-TGCTTGTGG 401
||||||||||||||||||||||||||| |||||||||||| ||||| ||| |||||||||
Sbjct 488 TGTTCAGCAACCAAATCTTAGTAGTGAGAAGTTGTCGAAAGTATCT-AAAGTGCTTGTGG 546
Query 402 CTCCTGATGCTGAAGGT-TCAGGAAGAGTAGTTAGAGACAAGGATGTTTTAG-CTAAGGA 459
||||||||||||||||| | | |||||||||||||||| || |||||||| | |||| ||
Sbjct 547 CTCCTGATGCTGAAGGTAT-AAGAAGAGTAGTTAGAGAAAATGATGTTTT-GTCTAAAGA 604
Query 460 TATAAAACCTTCCACAGTTGTTGAGACGAGAACATACTTGCCTAAGGCCAAGTCTATTTC 519
||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||
Sbjct 605 TATAAAACCTTCCTCAACTGTTGAGACGAGAACATACTTGCCTAAGGCCAAGTCAATTTC 664
Query 520 TACAGATGATAATAGATGCGTTGTTAATTCTGGAAAACAGGCTTTGCTTGAGAATCATAC 579
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TACAGATGATAATAGACGCGTTGTTAATTCTGGAAAACAGGCTTTGCTTGAGAATCATAC 724
Query 580 TGTAAAAA-ATGATAGTAGTAACTGTGAGTCACGACCAGGACAGGTTGATGGCGTTTCAA 638
|||||||| | ||| | | | | || | | | | | | || | | || |
Sbjct 725 TGTAAAAACA-GAT-G-A-T-A--GT-A---A-G----TGTC--G-TG-T--TG-TT--A 759
Query 639 AGAATAGTAGCCTCTTGAAACCGAGAGAGACTACTGAATCTGTTGGAAGTCCACGTGGAG 698
|||||| |||||||||||||||||| ||||||||||||||||||| ||||| ||||||||
Sbjct 760 AGAATATTAGCCTCTTGAAACCGAGGGAGACTACTGAATCTGTTGTAAGTCAACGTGGAG 819
Query 699 CAGCAGAGCCTTCGGTTTCAGTTTCTGTTGGCGAAAAAGTTGGTCCTTTTCAGATGTGTA 758
||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||
Sbjct 820 CAGCAGAGCCTTCGGTTTCAGTTCCTGTTGGCGATAAAGTAAGTCCTTTTCAGATGTGTA 879
Query 759 GTAGTGCAGAGGGCTCATTGGGTGAGTCAGATTCCATGCGGCGATGGAGGGAAATGAAGC 818
|||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 880 GTAGTGCAGATGGCTCATTAGGTGAGTCAGATTCGATGCGGCGATGGAGGGAAATGAAGC 939
Query 819 GGAATGGTTTTCTATCAGGCCCTTTGGGTGGAGTTGCAGCACCTAGCT-CTACAGTAGTG 877
||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 940 GGAATGGTTTTCTATCAGGCCCTTTGGGTGGAGTTGCAGCACCAA-CTTCTACAGTAGTG 998
Query 878 AGTACGCCTGTTGAAGTACCTGCGCAAAAGCAACAAAAGAATAAGCGGAGAAGTGAT--- 934
| ||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| |
Sbjct 999 ACTACGCCTGTTGAAGTACCTGCGCCAAAGCAACAGAAGAATAAGCGGAGAGGTGGTGAG 1058
Query 935 TCTCTCAAGAAGAGAAACGATGTCCCTAGGAAGGAACAACAGCTGGTAGATAGGTTTGCA 994
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1059 TCTCTCAAGAAGAAAAACGATGTCCCTAAGAAGGAACAACAGCTGGTAGATAGGTTCGCC 1118
Query 995 AATGTTACTGCGCCAAGTGGATTGCTGACGGAATTAAACCCTGGAATCATTAACCATGTC 1054
||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1119 AATGTTACTGCTCCAAGTGGATTGCTGACGGAATTGAACCCGGGAATCATTAACCATGTC 1178
Query 1055 AGAACTAAGAAACAGGTCTGCTCAATTATCGAAGCTTTGATTCGAAGT-GCTAATGATAA 1113
|| |||||||||||||||||||||||||| |||||||||||||||||| | ||||||| |
Sbjct 1179 AGGACTAAGAAACAGGTCTGCTCAATTATTGAAGCTTTGATTCGAAGTAG-TAATGATGA 1237
Query 1114 TGCTACCGTGGGGGAAAGACGTACCGATTTGAATGTAAGAGACTCAATCAGAGAAGATAG 1173
||||||| | ||||||||| | |||||| |||||||||||| ||||||||||||||||
Sbjct 1238 TGCTACCACGAGGGAAAGACATGGCGATTTCAATGTAAGAGACGCAATCAGAGAAGATAG 1297
Query 1174 GGCATTAGCCTTTAAGTTGCCATCCACCGGGGTACCTGATAATGCCATTTCCATTACAAA 1233
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1298 AGCATTAGCCTTTAAGTTACCATCCACCGGGGTGTCTGATAATGCCATTTCCATTACAAA 1357
Query 1234 TCCGGAAAAAGCCACATCTCTTGCTGTTGAAGCTGCTACCGTAGCTTCTCAATGGCTGGA 1293
||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1358 TCCTGAACAAGCCACATCTCTTGCTGTTGAAGCTGCTACCGTAGCTTCCCAATGGTTGGA 1417
Query 1294 ATTTCTTCAACAAGACCTCAGCGGACGACTTTCAGCTGTGCAGGATAGTAGGAATAGAGT 1353
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 GTTTCTTCAACAAGACCTCAGCGGACGACTTTCAGCTGTGCAGGATAGTAGGAATAGAGT 1477
Query 1354 TCAAAATATTTTGACTACCGAGTTACCGCTTCTCGTTTCATCAAGAGAATCTTCTTCTAA 1413
|||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1478 TCAAAATATTTTGACTACTGAGTTACCGCTTCTCGCTTCATCAAGGGAATCTTCTTCTAA 1537
Query 1414 CCTAGCAAATACTCTTGAGATGGCGACTTTGAATACCTCTGGTGATGCTTCGTCCGATAA 1473
|| ||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1538 CCAAGCAAATTCTCTTGAGATGGTGACTACGAATACCTCTGGTGATGCTTCGTCCGATAA 1597
Query 1474 AGCAGCAACAGAGACGCATCAGAA-AGGGTGGTCTGCAAAATTTGATCAGATAAATAAAG 1532
||||||||| ||||| |||||||| ||| ||| |||||||||||||||||||||||||||
Sbjct 1598 AGCAGCAACCGAGACACATCAGAAGAGG-TGGACTGCAAAATTTGATCAGATAAATAAAG 1656
Query 1533 CTCTTTATGATGAACAGAGAGATTTGGAACGTTCGCTAAACCAAGTGAAGGAAATGCAGT 1592
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 CTCTGTATGATGAACAGAGAGATTTGGAACGTTCGCTAAACCAAGTGAAGGAAATGCAGT 1716
Query 1593 CACGATGTAACGAGGGTCTACGACAAATGGAAGAGTACTCGCCTTTTAGTTCCCAATCAT 1652
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1717 CACGATGTAACCATGGTCTACGACAAATGGAAGAGTACTCGCCTTTTAGTTCCCAATCAT 1776
Query 1653 CTGATTCAAGTTTTGGGAAAGACAGTAATCAGGAGACTAGTATGGCGGTTCAGGCGGCTG 1712
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1777 CCGATTCAAGTTTTGGGAAAGACGGTAATCAGGAGACTAGTATGGCGGTTCAGGCGGCTG 1836
Query 1713 CAGCTTCCATTTTTTCGACCTGCGGTTTTCTTCTGTCAATGATGAAGCCGCCGCCTACCG 1772
||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1837 CAGCTTCTATTTTTTCAACCTGCAGTTTTCTTCTGTCAATGATGAAGCCGCCGCCTACCG 1896
Query 1773 GTTCTTAATCTTGTTATTTTT--------GGTTTACCGAGTTTGTGACTAATCACACCGC 1824
||||||||||||||| ||||| |||| ||||| ||| ||||||||||||||||
Sbjct 1897 GTTCTTAATCTTGTTTTTTTTTTTTTTTTGGTTAACCGAATTTCTGACTAATCACACCGC 1956
Query 1825 CTATATGTTGTCTTTATGTTAGCACTTTT--GATGTTTATTATCTTTAGTGTAAATAACA 1882
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1957 CTATATGTTGTCTTTATGTTAGCACTTTTTTGATGGTTATTATCTTTAGTGTAAATAACA 2016
Query 1883 GGCGATTGATGGGTTTGTCCTT-GTGTATGTAACATTAGAAGCGACCtttttt-ttATAT 1940
|||||||||| ||||||| || |||||||||||||||||||||||||||||| || | |
Sbjct 2017 GGCGATTGATCAGTTTGTCATTCGTGTATGTAACATTAGAAGCGACCTTTTTTCTTTT-T 2075
Query 1941 ATATCAATGCTACAAAGTTGGCATTTGCTTC 1971
||||||| ||||||||||||||||||| |||
Sbjct 2076 ATATCAAAGCTACAAAGTTGGCATTTGTTTC 2106
Score = 150 bits (81), Expect = 4e-35
Identities = 99/107 (93%), Gaps = 4/107 (4%)
Strand=Plus/Plus
Query 1 TCACCATTTGAATTCAAAATCCCtttttttCTTCCGTCTCTCATCGATTTATCCCCaaaa 60
||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||
Sbjct 38 TCACCATTTGAATTCAAAATCCCTTTTCT-CTTCTGTCTCTCATCGATTTATCCCCAAAT 96
Query 61 aaaTCACTTCCTTCTTCGTCCTCACCTCACTCCTCTACACAATTTAT 107
| | |||| |||||||||||||||||||||||||||||||||||||
Sbjct 97 A--T-ACTTTCTTCTTCGTCCTCACCTCACTCCTCTACACAATTTAT 140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97640060025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5