BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483121
Length=1344
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40640.1 | Symbols: | RING/U-box superfamily protein | chr2... 1940 0.0
> AT2G40640.1 | Symbols: | RING/U-box superfamily protein | chr2:16961140-16963205
REVERSE LENGTH=1342
Length=1342
Score = 1940 bits (1050), Expect = 0.0
Identities = 1252/1346 (93%), Gaps = 28/1346 (2%)
Strand=Plus/Plus
Query 1 GCTGCTCATGTCCCACTTACGACGACGTCGTTTTGAAACTCTCTCTGTGTGCTCTTTCAG 60
||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||
Sbjct 1 GCTACTCATGTCCCACTTACGACGACGTCGTTTT-AAACTCTCTCTCTGTGCTCTTCCAG 59
Query 61 CTTCCTCTATCGATCGCCTTGTGAATTTTCCGGCGGAAAAGCAAATGTCTGTTAATGACA 120
| |||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||
Sbjct 60 --T-CTCTATCGATCGCCTTCTGAATTTTCCGGCGGAAAAGCAAATGTCCGTTAACGACA 116
Query 121 GTATCGATCCTCGGTTCCTATTCCACGTAGAAGATGAATCTCTGCGTTTCCGTGTTGGAG 180
||||||||||||||||| |||||||||| |||||||||||| ||||||||||||| ||||
Sbjct 117 GTATCGATCCTCGGTTCGTATTCCACGTTGAAGATGAATCTTTGCGTTTCCGTGTGGGAG 176
Query 181 ATTCCGGTACTAAGAGCCGGGAGCTCGAAACCGTCGGCGATCGCCGTTTTAGAATTTCTG 240
|||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 177 ATTCAGGTACTAAGATCCGGGAGCTCGAAACCGTCGGCGATCGCC--------ATTTC-A 227
Query 241 GAATCCAGCAAGGTTTCTGCGGAAATAGACTTGAGAAAGATGAAACCATGTATTCCGATG 300
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 228 GAACCCAGCAAGGTTTCTGCGGAAATAGAATTGAGAAAGATGAAACCATGTATTCCGATG 287
Query 301 GAGATGATGACGAGGACGACGTTTCTATCCGAAGAAGAACTGCTCTGATTCAGCCTGGTA 360
|||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 288 GAGATGATGAAGAGTACGACGTTTCTATCCGAAGACGAACTGCTCTGATTCAGCCTGGTA 347
Query 361 TTGATTCCGGTAACAACTATGATTCTGCAGCTGAAGCTGAAGAAACCAACAGAGAAAGTA 420
|||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||
Sbjct 348 TTGATTCCGGTAACAATTATGATTCT---GCTGCAGCTGAAGAAACCAACAGAGAAAGTA 404
Query 421 AAAATCCAGTTGGTTGGGAAATGGTTGTGAGAGAAGATGATGAGGAAGGGAAATCATCGA 480
|||||||||||||||||||| |||||||||||||||||| | |||||| || ||| |||
Sbjct 405 AAAATCCAGTTGGTTGGGAACTGGTTGTGAGAGAAGATG--G-GGAAGGTAATTCAACGA 461
Query 481 TTGATCGCCATGAAATGGAGTTTAAGGTGATGATCACTAACCCAGATGGTAACGTATCTA 540
||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 462 TTGATCGACATGAAATGGAGTTTAAGGTGAGGATCACTAAACCAGATGGTAACGTATCTA 521
Query 541 ATTCCCGCCATAACATTCAGCCAAAGCGAGATTTTGCTTCTGTGGAGAAAGAGAAAGTCA 600
|||||| || ||||| || | ||||||||||||||||||||||||||| |||| |||||
Sbjct 522 ATTCCCACCGTAACACGCAACAAAAGCGAGATTTTGCTTCTGTGGAGAAGGAGAGAGTCA 581
Query 601 CTACTTCTAGTGTCAGCTCTTGGGAGTCTCTCAAGGCCATCCTCTCTGATCCTGTCACCG 660
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 CTACTACTAGTGTCAGCTCTTGGGAGTCTCTCAAGGCCATCCTCTCTGATCCTGTCACCG 641
Query 661 GAGCCTTGATGATTGATGCTACAATACTGCCTTGTGGACATTCTTTTGGTGCCGGGGGAT 720
|||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 642 GAGCCTTGATGAATGATGCTACCATACTGCCTTGTGGACATTCTTTTGGCGCCGGGGGAT 701
Query 721 TAATACAAGTTaaaaaaaTGAAAGCATGTTTCACATGTTCCCAACCTACTTTAGAAGGAT 780
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TAAAAGAAGTTAAAAAAATGAAAGCATGTTTCACATGTTCCCAACCTACTTTAGAAGGAT 761
Query 781 CAGAAAAGCCAAATCTCTCTCTCAGAATTGTAGTTCATGCTTTCCGCCAAGAAGAAGAAT 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 762 CAGAAAAGCCAAATCTCTCTCTCAGAATTGTAGTTCATGCTTTCCGCCAAGAAGAAGATT 821
Query 841 CTGATCATATTCACACGCTGAAGCGAAAGAAAGAAAGGTTGGATCAGAAGAGAAGTTTCT 900
| |||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct 822 CAGATCATATTCACACGCTGAAAAGAAGGAAAGAAAGGTCGGATCAGAAGAGAAGTTTCT 881
Query 901 GTATCCCAAACATCACTGAAACTCCAAAGAGTAGCCGAGGCATACAGTTTCCTTTCTCCA 960
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 882 GTATCCCAAACATCACTGAAACTCCTAAGAGTAGCCGAGGCATACAGTTTCCTTTCTCCA 941
Query 961 TTGGAGATCATATTATCATAGAGGGAAACAAAAGGACGCCTCCACGGTTTGTCGGACGCA 1020
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 942 TTGGAGATCATATTATCATAGAGGGAAACAAAAGGACGCCTCCAAGGTTTGTCGGACGCA 1001
Query 1021 -AGGCTGTTATAATGACACAGTGCTTAAATGGATGGTACGTTGTGAAGACAGTGGACAAT 1079
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1002 TAG-CTGTTATAATGACACAATGCTTAAATGGATGGTACGTTGTGAAGACAGTGGACAAT 1060
Query 1080 GCAGAGTCTATTAAGTTACAACATTGCTCACTTGCCAAGATTTCAGACAATTCATCTGCT 1139
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1061 TCAGAGTCTATCAAGTTACAACATTGCTCACTTGCCAAGATTTCAGACAATTCATCTACG 1120
Query 1140 AAGGTAACAGTAGCTGAAATGGCACCGTCTTGGCTCTAACTCGTCGAAAGCAAATA-CAT 1198
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| | |
Sbjct 1121 AAGGTAACAGTAGCTGAAATGCCACCGTCTTGGCTCTAACTCGTAGAAAGCAAATATC-T 1179
Query 1199 GTGGCTGCAGAAATCAGAAGCATCTGTAATTTTTTGGTTCAGGAGAAATTAGATACTACG 1258
||||||||||||||||| ||||||||||||||| ||||| ||||| ||| |||||||
Sbjct 1180 GTGGCTGCAGAAATCAG---CATCTGTAATTTTTTCATTCAG-AGAAAGTAGTTACTACG 1235
Query 1259 TTTGATTATGTAGTATAGGAACGAGACAAGAATTCTCTGTATTAAATCCAGTGTTTTTTA 1318
||| |||||||| |||||||||||||||| |||| |||||| ||||||||||||||| |
Sbjct 1236 TTTCATTATGTAATATAGGAACGAGACAACAATTTTCTGTACTAAATCCAGTGTTTTC-A 1294
Query 1319 TTCATACAAGGAAACTTTGCTCATCT 1344
||||||||||||||||||||||||||
Sbjct 1295 TTCATACAAGGAAACTTTGCTCATCT 1320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66164318310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5