BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483124
Length=1363
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40650.1 | Symbols: | PRP38 family protein | chr2:16963319-... 1836 0.0
> AT2G40650.1 | Symbols: | PRP38 family protein | chr2:16963319-16965752
REVERSE LENGTH=1493
Length=1493
Score = 1836 bits (994), Expect = 0.0
Identities = 1272/1400 (91%), Gaps = 44/1400 (3%)
Strand=Plus/Plus
Query 1 TCTTCAAAGCCCTAGAGTGTCTTCGTC-TCTACGACGGCAAATTCGTGGAAGCGGTTTCA 59
||||||||| ||||||||||||||||| || |||||||||||||||||||||| ||||||
Sbjct 5 TCTTCAAAGACCTAGAGTGTCTTCGTCTTCGACGACGGCAAATTCGTGGAAGCTGTTTCA 64
Query 60 ---A---C-GATTC-C-G--GCGTCG-C-CT-GACGCTTGTTATTCCGACGACTAGGCCT 105
| | | ||| | | ||| || | || |||| || ||||||||||||||||||||
Sbjct 65 TCGATTCCGGCTTCACTGAAGCGGCGTCGCTCGACGTTTATTATTCCGACGACTAGGCCT 124
Query 106 TCGAGGCGGTGTCTGATTAACTTCCGGCGATAATGGCAAACAGAACAGATCCGTTGGCCA 165
| ||||| || ||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 125 TTGAGGCAGTTTCTGATTAACTTCAGGCGATAATGGCAAACAGAACAGATCCGTTGG-CA 183
Query 166 AA-AATATCAGAGGTACGAATCCGCAGAATCTGGTAGAGAAGATTGTGAGAACGAAGATT 224
|| ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 184 AAGAATATAAGAGGAACGAATCCGCAGAATCTGGTAGAGAAGATTGTGCGAACGAAGATT 243
Query 225 TACCAGCACACCTTTTGGAAGGAGCAGTGCTTTGGTCTTACGGCGGAGACGTTGGTTGAC 284
|| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 244 TATCAGCACACCTTTTGGAAGGAGCAGTGCTTTGGTCTCACGGCGGAGACATTGGTGGAC 303
Query 285 AAAGCTATGGAGCTCGACCATCTTGGTGGTACCTTTGGTGGTAGCCGCAAGCCTACTCCG 344
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 304 AAAGCTATGGAGCTCGACCATCTAGGTGGTACCTTTGGTGGTAGCCGCAAGCCTACTCCG 363
Query 345 TTCCTTTGCCTCATATTGAAGATGCTACAAATCCAGCCTGAGAAAGAAATTGTCGTGGAG 404
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 364 TTCCTTTGCCTCATATTGAAGATGCTTCAAATCCAGCCTGAGAAGGAAATTGTCGTGGAG 423
Query 405 TTCATAAAAAACGATGATTACAAATATGTTCGTATTCTCGGTGCTTTCTATCTCCGTCTC 464
||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 424 TTCATAAAAAATGATGACTACAAATATGTTCGTATTCTTGGTGCGTTCTATCTGCGTCTC 483
Query 465 ACTGGGACTGATGTTGATGTCTATCGCTACCTCGAACCTCTTTACAATGACTACCGGAAA 524
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 484 ACTGGGACTGATGTTGATGTCTATCGCTACCTCGAACCTCTCTACAATGACTACCGGAAA 543
Query 525 GTGAGACAAAAGTTAGCTGATGGGAGGTTTTCGTTGACACATGTGGACGAAGTCATTGAG 584
||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 544 GTGAGACAAAAGTTATCTGATGGGAAGTTTTCGCTGACACATGTGGACGAAGTCATTGAG 603
Query 585 GAACTTTTAACCAAGGATTATTCTTGCGATATTGCAATGCCACGCTTGAAGAAGAGGTGG 644
|||||| ||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 604 GAACTTCTAACCAAGGATTATTCTTGTGATATTGCAATGCCACGTTTGAAGAAAAGGTGG 663
Query 645 ACGCTTGAACAGAATGGTCTT-TTAGAGCCAAGGAAAAGCGTTTTGGAAGACGACTTtga 703
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 664 ACGCTTGAACAGAATGGT-TTATTAGAGCCAAGGAAAAGTGTTTTGGAAGACGACTTTGA 722
Query 704 agaagaagaagaaaaggaggagaatgaagggattgcagatggatctgaagatgagaagga 763
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 723 AGAAGAGGAAGAAAAGGAGGAGAATGAAGGGATTGCTGATGGATCTGAAGATGAGATGGA 782
Query 764 tCATCAACGTAAGAGTCCTGAAAGAGAAAGAGAAAGAGACAGAGACAGGAGACGCGACAG 823
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TCAGCGCCGTAAGAGTCCTGAAAGAGAAAGAGAAAGAGACAGAGACAGGAGACGCGACAG 842
Query 824 TCATAGACACAGGGATCGTGATTATGACAGAGACTATGATATGGATCGAGATTATGACAG 883
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 843 TCATAGACACAGGGATCGTGATTATGACAGAGACTATGATATGGATCGAGATCATGACAG 902
Query 884 AGACTATGAAAGAGAACGTGGGCGTGGACGAGACCGGGATAGGGATAGAGACAGAGATCA 943
||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||
Sbjct 903 AGACTATGAAAGAGAACGTGGGCATGGTCGAGACCGGGATAGGGAGAGAGACAGGGATCA 962
Query 944 CTATAGAGAGCGAGATAGGGACAGGGAACGAGGCAGAGATAGAGAACGAGACAGAAGAGA 1003
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 963 CTATAGAGAGCGAGATAGGGACAGGGAAAGAGGCAGAGATAGAGAACGAGACAGAAGAGA 1022
Query 1004 CAGGGCAAGGCGCAGAAGTAGAAGCAGGAGTAGGGATCGTAAAAGACACGAAACTGATGA 1063
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1023 CAGGGCAAGGCGCAGAAGTAGAAGCAGGAGTAGGGATCGTAAGAGACATGAAACTGATGA 1082
Query 1064 TGTGCGGGATCGggaagaaccgaagaaaaagaaggaaaagaaggagaagatgagggaaga 1123
||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 1083 TGTGCGGGATCGGGAAGAACCTAAGAAAAAGAAAGAAAAGAAGGAGAAGATGAAGGAAGA 1142
Query 1124 tggaaCTGATCATCCAGATCCTGAAATTGCAGA-A-GCAAATAGACTGAGAGCGTCACTG 1181
|||||| ||||||||| |||||||||||||||| | | || |||||||||||| ||||||
Sbjct 1143 TGGAACCGATCATCCAAATCCTGAAATTGCAGAGATG-AA-TAGACTGAGAGCATCACTG 1200
Query 1182 GGACTGAAACCCTTGAGGC-CTTAGCAG-GAGACTG-GTGA-A-CTGTG--AAAT-GAGG 1233
||| |||||||| | ||| || | | | || | || | || | || | ||| ||
Sbjct 1201 GGAATGAAACCCCTCAGGGACTGAACTGTGAAA-TGAG-GACATCTTTATCAAACCGAA- 1257
Query 1234 ACATCCT--AT---CAAACC-AA-CCGGTTACCACACTGTGATCCTACTCGGTTTAGTTA 1286
|| | | || | | | || |||||||| ||||||||||||||||| | |||||
Sbjct 1258 ACTTGGTTCATTTGCCCAGCTAAACCGGTTACTACACTGTGATCCTACTCACTATAGTTT 1317
Query 1287 TGGTTTTC--GAGTT-ATCTGATCCCTCGTTGATGTAGAACAAAATGGAGAATCTTTAAT 1343
||||||| ||||| | |||||||||| || ||||||||||||||||||||||| ||||
Sbjct 1318 TGGTTTTTTTGAGTTTACCTGATCCCTCTTTAATGTAGAACAAAATGGAGAATCTGTAAT 1377
Query 1344 GGCATTGTACGGTATGTTCT 1363
|||||||||| |||||||||
Sbjct 1378 GGCATTGTACTGTATGTTCT 1397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67118128665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5