BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483125
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40660.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 2065 0.0
> AT2G40660.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr2:16965933-16969035 FORWARD LENGTH=1417
Length=1417
Score = 2065 bits (1118), Expect = 0.0
Identities = 1268/1341 (95%), Gaps = 8/1341 (1%)
Strand=Plus/Plus
Query 1 AGCGAAGAGCCCCAAAGAGAAGAACAAAATTTCGAAAATAGAGAAAGAGAAGAAGTTGAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 AGCGAAGAGCCCCAAAGAGAAGAACAAAATTTCGAAAATAGAGAAAGAGAAGAAGTTGAC 77
Query 61 GATGGATTCAAAGACGAAGCAGATGATTCTATCAGCTCTCTGCAAACACTTCTCCTTGGA 120
||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 78 GATGGATTCAAAGGCGAAGCAGATGATTCTTTCAGCTCTCTGCAAACACTTCTCTTTGGA 137
Query 121 TCCTGAACCTTTTGTGGGCGGAGCAGGTGATAGTGATGTCAAGACGCTTTATTCCAATGT 180
|||||||||||||||||||||||| ||||| |||||| ||||||| |||||||| |||||
Sbjct 138 TCCTGAACCTTTTGTGGGCGGAGCGGGTGAAAGTGATATCAAGACACTTTATTCTAATGT 197
Query 181 TTTGAAGGCATCTGGAAAGGAAGCGTCTGCACAAAACGATGAGGTTTTGAAGTGGCTGGA 240
|||||||||||||||||||||| |||||||||||| | || |||||||||||||| ||
Sbjct 198 ATTGAAGGCATCTGGAAAGGAAGTATCTGCACAAAACAACGATGTTTTGAAGTGGCTAGA 257
Query 241 ATTTGCGGAAGGTTTCTCTGCAGATTCAAAGGGTTGCTTTGCAGCTCTTGAAAAGTTGAA 300
|||||||||||||||||| |||||||||||| ||| ||| |||||||||||||||||||
Sbjct 258 TTTTGCGGAAGGTTTCTCTTCAGATTCAAAGGATTGGTTTTCAGCTCTTGAAAAGTTGAA 317
Query 301 TTTAGAGTTAGGTACCAAGTCAGTGCTCTTGGGAAACGGATTGACGCCATCGGCAGCTGA 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 TTTAGAGTTAGCTACCAAGTCAGTGCTCTTGGGAAACGGATTGACGCCATCGGCAGCTGA 377
Query 361 TGTTGCTGTGTTTTCAGCAT-TGCATTCTTCAGTGCTTGGCCTCTCAGATTCAAACAAGG 419
|||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 378 TGTTGCTGTGTTTTCAGC-TCTGCATTCTTCAGTGCTTGGCCTCTCAGATTCAGACAAGG 436
Query 420 AGAAAGTACCACATGTCATAAGATGGGTGAATTACATCCAGAATAAAGAAGAGTTGTCAA 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 437 AGAAAGTACCACATGTCATAAGATGGGTGAATTACATCCAGAATAAAGAAGAGTTGTCGA 496
Query 480 CATTATTTGCACCAATACCTGTGAAGCTACCAGAATTTGA-CTTCGAGGTATCAAAGCCT 538
|||||||||||||||||||||||||||||||||||||| | |||||||||| |||| |||
Sbjct 497 CATTATTTGCACCAATACCTGTGAAGCTACCAGAATTT-AGCTTCGAGGTACCAAAACCT 555
Query 539 GCCATTAAGGTGGAAGCAAATTCTAATACaaaaaaaGCTGCAGAAGGTGTAAAGCCTGTT 598
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 556 GCCATTAAGGTGGAAACAAATTCTAATTCAAAAAAAGCTGCAGAAGGTGTAAAGCCTGTT 615
Query 599 GACAAGTCAGAAGCACAGCCGCAGCCGAGCGcaaagaaaactgagcctgaggaaccaaag 658
|||||| |||| | |||||||||| | || |||||||||||||||| ||||||||||||
Sbjct 616 GACAAGCCAGATGTGCAGCCGCAGCTGGGCACAAAGAAAACTGAGCCAGAGGAACCAAAG 675
Query 659 aaaaatgcaacaaaagaaaaggatgccaaaaaggaaaagaagaaacctgctgaaacagaa 718
||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |||||
Sbjct 676 AAAAATGCAGCAAAAGAGAAGGATGCCAAAAAGGAAAAGAAGAAGCCTGCTGAACCAGAA 735
Query 719 ccagctaagaaagaGGCAGAGCTTAGTGTCAGTTTGCTTAATATTCAGGTTGGTCTAATT 778
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 736 CCAGCTAAGAAAGAGGCAGAGCTTAGTGTCAGTTTGCTTAACATTCAGGTTGGTCTAATT 795
Query 779 CGCAAAGCATGGAAGCACCCTTCTGCGGATAGTTTGCTGGTGGAAGAAATAGATGTCGGG 838
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 796 CGTAAAGCATGGAAGCACCCATCGGCGGATAGTTTGCTGGTGGAAGAAATAGATGTCGGG 855
Query 839 GAGGATAAAGTGAGGCAAGTAGTTAGTGGCTTAGCGAAGTTCTGCAATCCTGATGATCTA 898
|||||||||||||| |||||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 856 GAGGATAAAGTGAGACAAGTAGTTAGTGGCTTAGCAAAGTTCTGCAGTCCTGAGGATCTA 915
Query 899 ACGAACCGCCTTGTTGCGCTTATCACAAATGTCAAACCTGGAAAGCTAAGAGATGTAATG 958
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 916 ACGAACCGCCTCGTTGCACTCATCACAAATGTCAAACCTGGAAAGCTAAGAGATGTAATG 975
Query 959 TCACAAGGACTGGTTCTTTGTGCTTCAAGTGAAGATCACTCGGTGGTAGAGCCGTTGCTA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 TCACAAGGACTGGTTCTTTGTGCTTCAAGTGAAGATCACTCGGTGGTAGAGCCGTTGCTA 1035
Query 1019 CCACCTGCTGGGGCTAAACCAGGAGAGCGTGTTTCATTTTCAGGGATTGAAGGAAAGCCA 1078
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 CCACCTGCTGGTGCTAAACCAGGAGAGCGTGTTTCATTTTCAGGGATTGAAGGAAAGCCA 1095
Query 1079 GAGGATGTACTGAACCCAAAAAAGAAGCAACTAGAGAAGATAACACCGGGTCTCTACACT 1138
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 GAAGATGTACTGAACCCAAAAAAGAAGCAACTAGAGAAGATAACACCGGGTCTCTACACT 1155
Query 1139 GATGAGAATGGCGTAGCCACATACAAAGGCATACCATTTATGACCTCGGCTGGACCTTGC 1198
||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1156 GATGAAAATGGCGTAGCCACATACAAAGGCATACAATTCATGACCTCGGCTGGACCTTGC 1215
Query 1199 ACTTCCAGTATTCCCAAGGCTACCATCAAGTAGTAAACTCAGTTGATACTTCTC-C-TCT 1256
|||||||| || |||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 1216 ACTTCCAGCATCCCCAAGGCGACCATCAAGTAGTAAACTCAGTTGATACTTCTCTCCTCT 1275
Query 1257 TCGCTAGCGTTTTGCTTTGTTATTCGCAAACTCAGTTGGAAAAAGAAAAAGATGTTTATT 1316
| |||||||||| ||||| ||||||||||||||||||||||||||||| |||||| ||
Sbjct 1276 ACTCTAGCGTTTTTCTTTGATATTCGCAAACTCAGTTGGAAAAAGAAAA-GATGTTC-TT 1333
Query 1317 TTTGTCACATTTTGAATTAAT 1337
||||||||| || ||||||||
Sbjct 1334 TTTGTCACAATTCGAATTAAT 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65812914495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5