BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483126
Length=571
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40670.2 | Symbols: RR16 | response regulator 16 | chr2:1697... 881 0.0
AT3G56380.1 | Symbols: ARR17, RR17 | response regulator 17 | ch... 418 3e-116
> AT2G40670.2 | Symbols: RR16 | response regulator 16 | chr2:16970230-16971234
FORWARD LENGTH=640
Length=640
Score = 881 bits (477), Expect = 0.0
Identities = 550/583 (94%), Gaps = 13/583 (2%)
Strand=Plus/Plus
Query 1 ATGAACAGTTCAGGAGGTTCTTGTTCGTCTTTAATGGATGTGGTGACTTATGATC--C-T 57
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 29 ATGAACAGTTCAGGAGGTTCTTGTTCGTCTTTAATGGATGTGGTGGCTTATGATCATCAT 88
Query 58 CATCATCATGGTCATGATGAAGAGCTTCATGTTTTAGCTGTAGATGATAATCTAATTGAC 117
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 89 CTTCATCATGGTCATGATGAAGAGCTTCATGTTTTAGCTGTAGATGATAATCTTATTGAC 148
Query 118 CGTAAACTCGTAGAGAAGTTGCTCAAGATCTCTTCTTGCAAAGTCACAACAGCAGAGAAT 177
||||||||||| |||| ||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 149 CGTAAACTCGTTGAGAGGTTGCTCAAGATCTCTTGTTGCAAAGTGACAACAGCAGAGAAT 208
Query 178 GCGATAAGAGCATTGGAGTATTTGGGTTTGGGAGACCAAAATCAGCATATTGATGCATTG 237
||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 209 GCGCTTAGAGCATTGGAGTATTTGGGTTTGGGAGATCAAAATCAGCATATTGATGCATTG 268
Query 238 ACCTGTAACGTTATGAAGGTGAACCTAATCATCACAGATTACTGTATGCCTGGAATGACA 297
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 269 ACCTGTAACGTTATGAAGGTGAGTCTAATCATCACCGATTACTGTATGCCTGGAATGACA 328
Query 298 GGTTTTGAGCTGCTCAAGAAAGTG-A--AGGAGTCATCAAATCTGAGAGAGGTTCCTGTT 354
||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 329 GGTTTTGAGCTACTCAAGAAAGTGAAGCAGGAGTCATCAAATCTGAGAGAGGTTCCTGTT 388
Query 355 GTGATAATGTCTTCAGAGAATATTCCTACTCGCATCAACAAATGTTTAGCGAGTGGAGCT 414
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 389 GTGATAATGTCTTCAGAGAATATTCCTACTCGCATAAACAAATGTTTAGCGAGTGGAGCT 448
Query 415 CAAATGTTTATGCAGAAGCCTTTGAAACT-GTCTGATGTTGAGAAACTTAAGTGTCATCT 473
|||||||||||||||||||||||||| || | ||||||||||||| ||||| ||||||||
Sbjct 449 CAAATGTTTATGCAGAAGCCTTTGAAGCTTG-CTGATGTTGAGAAGCTTAAATGTCATCT 507
Query 474 CATGAACTGCAGAAGCTAACCATGAGAGATTTA-A-TGTTAGTCCTAACCATGAAACATT 531
||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| ||
Sbjct 508 CATGAACTGCAGAAGCTAACCATGAGAGATTTATAATGTTAGCCCTAACCATGAAACGTT 567
Query 532 T-CATTGT--CTTGATTCCTTATTTGATTATTTTACATGTTTT 571
| |||||| |||||||||||||||||||||||||||||||||
Sbjct 568 TTCATTGTGTCTTGATTCCTTATTTGATTATTTTACATGTTTT 610
> AT3G56380.1 | Symbols: ARR17, RR17 | response regulator 17 |
chr3:20905480-20906368 FORWARD LENGTH=462
Length=462
Score = 418 bits (226), Expect = 3e-116
Identities = 355/416 (85%), Gaps = 14/416 (3%)
Strand=Plus/Plus
Query 79 GAGCTTCATGTTTTAGCTGTAGATGATAATCTAATTGACCGTAAACTCGT--AGAGAAGT 136
||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| |
Sbjct 55 GAGCTTCATGTTTTAGCAGTAGATGATAATCTAATTGACCGTAAACTTGTTGAGAGAA-T 113
Query 137 TGCTCAAGATCTCTTCTTGCAAAGTCACAACAGCAGAGAATGCGATAAGAGCATTGGAGT 196
||||||||||||||||||||||| ||||| ||||| || | | | ||||| || || |
Sbjct 114 C-CTCAAGATCTCTTCTTGCAAAGTGACAACTGCAGAAAACGGGCTTAGAGCTTTAGAAT 172
Query 197 ATTTGGGTTTGGGAGA-CCAAAATCAGCATATTGATGCATTGACCTGTAACGTTATGAAG 255
|||| || |||||||| ||| || ||| | | ||| ||||||| | || || ||||||
Sbjct 173 ATTTAGGCTTGGGAGATCCACAA-CAG-AC-T-GATTCATTGAC-T--AATGTAATGAAG 225
Query 256 GTGAACCTAATCATCACAGATTACTGTATGCCTGGAATGACAGGTTTTGAGCTGCTCAAG 315
||||| || |||||||| ||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 226 GTGAATCTCATCATCACTGATTATTGTATGCCAGGAATGACAGGTTTTGAGCTGCTTAAG 285
Query 316 AAAGTGAAGGAGTCATCAAATCTGAGAG-AGGTTCCTGTTGTGATAATGTCTTCAGAGAA 374
||||||||||| ||||| ||||| | || | || |||||||||||| |||||||||||||
Sbjct 286 AAAGTGAAGGAATCATCGAATCTAA-AGGAAGTACCTGTTGTGATATTGTCTTCAGAGAA 344
Query 375 TATTCCTACTCGCATCAACAAATGTTTAGCGAGTGGAGCTCAAATGTTTATGCAGAAGCC 434
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 345 CATTCCTACCCGCATCAACAAATGTTTAGCGAGTGGAGCACAGATGTTTATGCAGAAGCC 404
Query 435 TTTGAAACTGTCTGATGTTGAGAAACTTAAGTGTCATCTCATGAACTGCAGAAGCT 490
||||||| |||||||| |||||||| || || ||||| | || ||||||||||
Sbjct 405 ACTGAAACTATCTGATGTAGAGAAACTGAAATGCCATCTTTTAAATTGCAGAAGCT 460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27427844262
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5