BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483127
Length=1585
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40690.1 | Symbols: GLY1, SFD1 | NAD-dependent glycerol-3-ph... 2567 0.0
> AT2G40690.1 | Symbols: GLY1, SFD1 | NAD-dependent glycerol-3-phosphate
dehydrogenase family protein | chr2:16973992-16976458
FORWARD LENGTH=1595
Length=1595
Score = 2567 bits (1390), Expect = 0.0
Identities = 1529/1595 (96%), Gaps = 13/1595 (1%)
Strand=Plus/Plus
Query 1 AAGAATAACTGCAAAAGACGAAAAAGATTCTCTTCActcgctctctctcgctcgctcgct 60
||||||||||||||||||||||||||| ||| |||||| ||||||||| || |||||||
Sbjct 1 AAGAATAACTGCAAAAGACGAAAAAGAATCTGTTCACT--CTCTCTCTCTCTGGCTCGCT 58
Query 61 ctctctcAATCTTTCCGATTTGGTTGGG-TC-T-T----CTCCAAGTCTCTGCGAAAATG 113
| |||||||||||||||||||||||||| || | | |||||||||||||||||||||
Sbjct 59 CGCTCTCAATCTTTCCGATTTGGTTGGGTTCTTCTCCAACTCCAAGTCTCTGCGAAAATG 118
Query 114 GCGGCTTCGGTGCAACCTGCATGCTTAGACCTCCATTTCTCCGGCAAGCATCCACCGCTT 173
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 119 GCGGCTTCGGTGCAACCTGCATGCTTAGACCTCCACTTCTCCGGAAAGCATCCACCGCTT 178
Query 174 CTTAAACACAACGCTATTTTCGTCCGCTGCGTTTCTTCTCCAAATGTAATTCCCGAAGCT 233
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CTTAAACACAACGCTATTATCGTCCGCTGCGTTTCTTCTCCAAATGTAATTCCCGAAGCT 238
Query 234 GACTCCATCTCCGGTCCGCCTGATATCATCAATACGAGCCGTGACCAGCGCAAAGTCGTT 293
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 239 GACTCCATCTCTGGTCCGCCTGATATCATCAATACGAACCGTGACCAGCGCAAAGTGGTT 298
Query 294 CGTATCGCGTGGGAGAAGTTGGTTCGATGGTCTCGTTCTTGGCGCGCTAAAGCTAAAACT 353
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 299 CGTATCGCTTGGGAGAAGTTGGTTCGATGGTCTCGTTCTTTGCGCGCTAAAGCTAAAACC 358
Query 354 GATGTTCTTGAGCGCACTCGCAAGGTTGTTGTTCTTGGTGGAGGTTCGTTTGGTACTGCA 413
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GATGTTCTTGAGCGTACTCGCAAGGTTGTTGTTCTTGGTGGAGGTTCGTTTGGTACTGCA 418
Query 414 ATGGCTGCTCATGTAGCTAGAAGGAAAGAGGGATTGGAGGTTAATATGCTTGTTCGTGAC 473
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 419 ATGGCTGCTCATGTAGCTAGAAGGAAAGAGGGATTAGAGGTTAATATGCTTGTTCGTGAC 478
Query 474 TCTTTTGTTTGCCAATCTATCAACGATAACCACCATAATTGTAAGTATTTTCCTGAGCAC 533
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 479 TCTTTTGTTTGTCAATCTATCAACGAGAACCACCATAATTGTAAGTATTTTCCTGAGCAC 538
Query 534 AAGTTACCTGAGAATGTGATTGCTACTACTGACGCGAAAGCTGCATTGCTTGATGCTGAT 593
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 539 AAGTTACCTGAGAATGTGATTGCTACAACTGATGCGAAAGCTGCATTGCTTGATGCTGAT 598
Query 594 TATTGCCTCCATGCCGTACCTGTGCAGTTCAGCTCATT-GTTTCTAGAGGGAATTGCCGA 652
|| ||||| |||||||| ||||||||||| ||||| || |||||||||||||||||||||
Sbjct 599 TACTGCCTTCATGCCGTGCCTGTGCAGTTTAGCTC-TTCGTTTCTAGAGGGAATTGCCGA 657
Query 653 TTATGTCGATCCAGGATTGCCTTTTATATCTCTTAGCAAAGGTCTGGAGCTTAATACTCT 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTATGTCGATCCAGGATTGCCTTTTATATCTCTTAGCAAAGGTCTGGAGCTTAATACTCT 717
Query 713 TAGGATGATGTCTCAGATCATTCCCACTGCGCTTAAGAATCCCCGGCAACCTTTTGTTGC 772
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 718 TAGGATGATGTCTCAGATCATTCCCATTGCGCTTAAGAATCCCCGGCAACCTTTTGTTGC 777
Query 773 TCTTTCTGGCCCGTCATTTGCTCTGGAGCTAATGAACAATTTACCAACTGCAATGGTGGT 832
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 778 TCTTTCTGGCCCGTCATTTGCTCTGGAGCTGATGAACAATTTACCAACTGCAATGGTGGT 837
Query 833 TGCCTCGAAAGATAAGAAATTGGCCAATGCTGTTCAGCAGCTTCTGGCTTCTAGTTACTT 892
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 838 TGCCTCAAAAGATAAGAAATTGGCCAATGCTGTTCAGCAGCTTCTTGCTTCTAGTTACTT 897
Query 893 GAGAATAAATACTTCCAGTGATGTTACAGGCGTGGAAATTGCCGGTGCCCTGAAGAATGT 952
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 898 GAGAATAAATACTTCCAGTGATGTTACAGGCGTGGAAATCGCCGGTGCCCTGAAGAATGT 957
Query 953 TCTAGCAATAGCTGCAGGAATTGTTGATGGAATGAATCTCGGTAACAACTCTATGGCAGC 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TCTAGCAATAGCTGCAGGAATTGTTGATGGAATGAATCTCGGTAACAACTCTATGGCAGC 1017
Query 1013 ACTTGTATCACAAGGTTGTTCAGAGATAAGATGGCTAGCCACAAAGATGGGTGCAAAGCC 1072
||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1018 TCTTGTGTCCCAAGGTTGTTCAGAGATAAGATGGTTAGCCACAAAGATGGGTGCAAAGCC 1077
Query 1073 AACAACCATAACTGGTTTATCAGGAACTGGGGACATAATGCTTACGTGTTTTGTAAATCT 1132
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AACAACCATTACTGGTTTATCAGGAACTGGGGACATAATGCTTACGTGTTTTGTAAATCT 1137
Query 1133 TTCAAGAAACCGAACAGTTGGAGTCAGGTTAGGGTCAGGGGAGACATTAGATGACATACT 1192
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1138 TTCAAGAAACCGAACAGTTGGAGTCAGGTTAGGGTCAGGGGAGACACTAGATGACATACT 1197
Query 1193 AACCTCCATGAATCAGGTTGCAGAAGGTGTAGCAACCGCTGGGGCAGTGATAGCATTAGC 1252
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1198 AACCTCTATGAATCAGGTTGCAGAAGGTGTAGCAACAGCCGGGGCAGTGATAGCATTAGC 1257
Query 1253 ACAAAAATACAATGTGAAACTACCGGTTTTGACAGCTGTAGCTAAGATAATAGATAATGA 1312
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1258 ACAGAAATACAATGTGAAACTGCCGGTTTTGACAGCCGTAGCTAAGATAATAGATAATGA 1317
Query 1313 ACTGACCCCGACTAAGGCTGTTCTTGAGCTCATGAACCTTCCTCAGATTGAAGAAGTATG 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 ACTGACCCCGACTAAGGCTGTTCTTGAGCTCATGAACCTTCCTCAGATTGAAGAAGTATG 1377
Query 1373 AGATGGAACAATCGTTTTGAGGACCAAATATTAAAAGAGATAGCTTTAAGGCGGCGAGAG 1432
|| | ||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||
Sbjct 1378 AGGTAGAACAATCGTTTTGAGGACCACATATTCAAAGAGATGGCTTTAAGGCGGCAAGAG 1437
Query 1433 CTTTGCATTCGTTTAGAGATAGCTAATGATAGAGATGATTCAAAATGAGTTTTGTAATCG 1492
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 1438 CTTTGCATTCGTTTAGAGATAGCTAACGATAGAGATGATTCGAAGTGAGTTTTGTAATCG 1497
Query 1493 ATTTT-AGGCCTGATTCTCATGAATGTGAATTGTTCATAAACATTTTACAAAATCTCTGT 1551
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 ATTTTTAGGCCTGAATCTCATGAATGTGAATTGTTCATAAACATTTTACAAAATCTCTGT 1557
Query 1552 AAAGTTTTCTCAT-CATCTATAAAAATGATGTTTC 1585
||| ||||||| | |||||||||||||||||||||
Sbjct 1558 AAATTTTTCTCTTACATCTATAAAAATGATGTTTC 1592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78262649655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5