BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483128
Length=1988
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosp... 3149 0.0
> AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:16976783-16979558
FORWARD LENGTH=1996
Length=1996
Score = 3149 bits (1705), Expect = 0.0
Identities = 1897/1991 (95%), Gaps = 8/1991 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAGAACCCAACAATCTGCAAGAGAAGCAAAGCAAGAAGCTAAAGATGCAAGCAAA 60
||||||||| |||||||||| ||||||||| |||||||||||||||||||||| ||||||
Sbjct 1 ATGAAGAGAGCCCAACAATCGGCAAGAGAAACAAAGCAAGAAGCTAAAGATGCTAGCAAA 60
Query 61 GCGAAGAGCGGTTTATTCGCTTCTTGTTCCTTCTCTTCCCTTGGTTTAGATCCCAAGCTC 120
|||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 61 GCGAAGAGCGGTTTGTTCGCTTCTTGTTCCTTCTCTTCACTTGGTTTAGATACCAAGCTC 120
Query 121 TCTGACCAGCTCCAAGAAAGGATGGGTTTTGAAGCTCCTACGCTTGTACAAGCTCAAGCA 180
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TCTGACCAGCTCAAAGAAAGGATGGGTTTTGAAGCTCCTACTCTTGTACAAGCTCAAGCA 180
Query 181 ATTCCTGTTATTCTCTCTGGTCGAGATGTACTTGTTAATGCTGCAACCGGTACTGGAAAG 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 ATTCCTGTTATTCTCTCTGGTCGAGATGTACTTGTTAATGCTCCAACCGGTACTGGAAAG 240
Query 241 ACTATAGCGTATTTGGCACCACTCATCCATCACTTGCAGGGTTATTCTCCTAAGGTTGAT 300
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 241 ACTATAGCGTATTTGGCACCCCTCATCCATCACTTGCAGGGTCATTCTCCTAAGGTTGAT 300
Query 301 CGTTCTCATGGAACTTTTGCTTTGGTGATTGTGCCTACCCGGGAACTATGCCTTCAGGTG 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 CGTTCTCATGGAACTTTTGCTTTGGTGATTGTGCCTACACGGGAACTATGCCTTCAGGTG 360
Query 361 TATGAAACCTTGGAGAAGTTACTGCATCGGTTCCATTGGATTGTCCCTGGCTATGTAATG 420
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 361 TATGAAACCTTGGAGAAGTTACTGCATCGGTTCCATTGGATAGTCCCTGGCTATGTTATG 420
Query 421 GGAGGAGAGAAAAAGGCTAAAGAAAAGGCTAGGTTAAGGAAAGGGATATCCATTCTAATT 480
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 421 GGAGGAGAGAAAAAGGCTAAAGAAAAGGCTAGATTAAGGAAAGGAATATCCATTCTAATT 480
Query 481 GCAACCCCGGGACGCCTTCTTGACCATTTGAAGAACACAGCTTCATTCGTGCACAAAAAT 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 GCAACCCCGGGACGCCTTCTTGACCATTTGAAGAACACAGCTTCATTTGTGCACAAAAAT 540
Query 541 CTGCGTTGGGTCATCTTTGATGAAGCTGATAGCATTCTCGAATTAGGTTATGGGAAGGAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTGCGTTGGGTCATCTTTGATGAAGCTGATAGCATTCTCGAATTAGGTTATGGGAAGGAG 600
Query 601 ATAGAACAGATAATTAAGCTTCTAGGTTCAGGGCAAAACGAAG-AAGGTGAA-ACGGATG 658
||||||||||||||||||||||||||||||||||||||||| | |||| ||| | | |||
Sbjct 601 ATAGAACAGATAATTAAGCTTCTAGGTTCAGGGCAAAACGA-GCAAGGGGAAGAAG-ATG 658
Query 659 ATATTGTTCCAAAGGGCATTCAGAAGCAGAACTTATTATTGTCAGCAACATTGAATGAAA 718
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 659 ATATTGTTCCAAAGGGTATTCAGAAGCAGAACTTGTTATTGTCAGCAACATTGAATGATA 718
Query 719 AAGTTAATGATCTTGCAAAACTTAGTTTGGACGATCCGGTAATGATTGGTCTTGACAACA 778
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AAGTTAACGATCTTGCAAAACTTAGTTTGGACGATCCGGTAATGATTGGTCTTGACAACA 778
Query 779 GCAAATTACAACAAAATCTATCAATAGAGTCTCCTGCCTCTCCTGACTCTGATGCGGATG 838
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 779 CCAAATTGCAACAAAATCTATCAATAGAGTCTCCTGCGGCTCCTGACTCTGATGCGGAAG 838
Query 839 ATATGGTAATTCATGTTAACAAATCCGTAAATCCTTCATCTGAGGACTATGGAATACCAT 898
||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||
Sbjct 839 ATATGGTAATTCATGTTAACAAATCCGCAAACCCTTTATCTGAGGACTATGGAATACCAT 898
Query 899 CACAGCTAGTGCAGAAATATGTTAGAGTGCCATGTGGTGCACGGCTTGTGGCACTTCTTT 958
||||||| || |||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 899 CACAGCTGGTACAGAGATATCTTAGAGTGCCATGTGGTGCACGGCTTGTGGCACTTCTTT 958
Query 959 CTGTTCTCAAGAACCTTTTTGAAAGAGAAGCTTCTCAAAAGGTGGTCGTATTCTTTTCGA 1018
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 959 CTGTTCTCAAGAACCTTTTTGAAAGAGAAGCTTCTCAAAAGGTGGTCGTCTTCTTTTCGA 1018
Query 1019 CACGTGATGCTGTAGATTTTCATTACTCACTTCTGACTGAATTCCAGTGGCCACCAAATT 1078
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1019 CACGTGATGCTGTAGATTTTCATTACTCACTTCTGAGTGAATTCCAGTGGCCACCGAATT 1078
Query 1079 CTGAGACAGAAGAGGAGGGGACTAAACAGTTGTTTCTTAAGTGCAAAACGTTTCGGTTAC 1138
|||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||
Sbjct 1079 CTGAGACAGAAGAGGAGGGGACTAAAGAGTTGTTTCTCAAGTGCAAAACGTTCCGGTTAC 1138
Query 1139 ATGGAAGTATGGAGCAGGAGGATAGAAGATCTGCGTTTGGGAC-TTTCAAAACAGAGAAA 1197
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1139 ATGGAAGTATGGAGCAGGAGGATAGAAGATCTGCGTTTGGGACCTTT-AAAACAGAGAAG 1197
Query 1198 CAGGCCCTTCTCTTGAGTACAGATGTTGCTGCTAGAGGCTTGGATTTCCCAAAAGTAAGA 1257
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CAGGCTGTTCTGTTGAGTACAGATGTTGCTGCTAGAGGCTTGGATTTCCCAAAAGTAAGA 1257
Query 1258 TGCATTATACAATATGACTGTCCTGGGGAAGCTACCGAGTATGTGCATAGAGTGGGTCGA 1317
|| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 1258 TGTATTATACAATATGACTGTCCCGGGGAAGCTACCGAGTATGTGCATAGAGTTGGTAGA 1317
Query 1318 ACAGCTCGTATTGGTGAAAAGGGAGAAGCCTTGTTATTTCTACAACCGATTGAAATAGAC 1377
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1318 ACAGCTCGTATTGGTGAAAAAGGAGAAGCCTTGTTATTTCTACAACCGATTGAAATAGAC 1377
Query 1378 TATCTTAAGGAGCTTAAGAAACATGGCGCATCACTTACAGAGTACCCTCTTCTAAAAGTA 1437
|||||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 1378 TATCTTAAGGAGCTGAAGAAACATGGTGCATCACTTACAGAGTACCCTCTTATGAAAGTA 1437
Query 1438 CTTGATAAATTTCCCATACCCGGCAATATGCCCCGAATCAAAAAGGTCATATCCCTAGAA 1497
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1438 CTTGATAAATTTCCCATACCCGGCAATATGCCCCGAATCAAAAAGGTCCTATCTCTAGAA 1497
Query 1498 TCGCATCCATGGGTCATATCTCTGCAAAGAGCTCTTGAATCCTTTAATTACGCTGAGCCA 1557
|| ||||||||||||||||||||||| ||||||||||||||| ||| |||||| ||||||
Sbjct 1498 TCCCATCCATGGGTCATATCTCTGCAGAGAGCTCTTGAATCCCTTACTTACGCCGAGCCA 1557
Query 1558 AAGATGAAGAGCCTGGCGAAAAATGCATTTGTCTCTTGGGTTAGGGGATATGCAGCTCAC 1617
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1558 AAGATGAAGAGCCTGGCCAAGAATGCATTTGTCTCTTGGGTTAGGGGATATGCAGCTCAC 1617
Query 1618 AAGGGAGAGCTCAAGAGCATTTTCGTGGTGAAGAAGCTTCACTTAGGTCATGTCGCCAAG 1677
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1618 AAGGGAGAGCTCAAGAGTATTTTCGTGGTGAAGAAGCTTCACTTGGGTCATGTCGCCAAG 1677
Query 1678 AGTTTTGCTCTGCGAGAGCAACCGTCTTTAGTTGGGAAATCACATCACAAGGAATCAATg 1737
|||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1678 AGTTTTGCTCTGAGAGAACAACCGTCTTTAGTTGGGAAATCACATCACAAGGAAACAATG 1737
Query 1738 aagagaaagagagacgaacgtcagaaagggcaacaaggtaagaagagaaagaagaTGAGT 1797
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1738 AAGAGAAAGAGAGACGAACGTCAAAAAGGGCAACAAGGTAAGAAGAGAAAGAAGATGAGT 1797
Query 1798 GGCAGTGGCAATAGAAGTACACAAAAAACTTGATCAAATCGGTTTCGCCACCATAAACCA 1857
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 GGTACTGGCAATAGAAGTACACAAAAAACTTGATCAAATCGGTTTCGCCACCATAAACCG 1857
Query 1858 TGGCATAAGTTTTGTAGTGAATGAGCTCTGCTTTGTTCATTGAAAATTTTGAAATATCTA 1917
|||| ||||||||||||| || ||||| | |||| |||| ||| ||||||||||||| |
Sbjct 1858 TGGCGTAAGTTTTGTAGTTAAGGAGCTG-G-TTTGCTCATCGAATATTTTGAAATATCGA 1915
Query 1918 AAAGAAGTTTGGAACTTAATCATGTTTGTTAACAATATTATTTGTATTAGCCAGAAAGCT 1977
||||||||| ||| ||| |||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1916 AAAGAAGTTGGGAGCTTTATCATGTTTGTTAACAATATTACTTGTATTGGCCAGAAAGCT 1975
Query 1978 AAAGATTCACA 1988
|||||||||||
Sbjct 1976 AAAGATTCACA 1986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98493469290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5