BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483132
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40745.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1024 0.0
> AT2G40745.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G39975.1);
Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17008174-17008917
REVERSE LENGTH=744
Length=744
Score = 1024 bits (554), Expect = 0.0
Identities = 677/736 (92%), Gaps = 9/736 (1%)
Strand=Plus/Plus
Query 1 ATTCAAACAACATTTATTACTCATTATTTAGCATC-CGTTTTTCTCGTTTATAAATAAAG 59
|||||||||||||||||| |||||| ||||||||| ||||||| ||||||||| ||||
Sbjct 12 ATTCAAACAACATTTATTTCTCATTGTTTAGCATCTATTTTTTCTTGTTTATAAACAAAG 71
Query 60 AATTACGACATGAAACACGTGCATTTTAACATACATATATATGGAAAAATGTCGAATTTC 119
|||||| |||||||||||||||||||||||||| |||||| | | |||||||||||||||
Sbjct 72 AATTACAACATGAAACACGTGCATTTTAACATAAATATATTTAG-AAAATGTCGAATTTC 130
Query 120 GTGAATTAGTGAGAGaaaaaaaaaaCACAAAATCAAATACTGAGGTGTA-TATAAGTTGA 178
||||||||||||||| |||||| ||||||| ||| | ||||||||| | ||||||||
Sbjct 131 GTGAATTAGTGAGAG---AAAAAACCACAAAAACAATTGTTGAGGTGTAGT-TAAGTTGA 186
Query 179 TACATCAATCACAAATATTATTCTACTCAAATTTCTTATTTGAAAAGAAGAAAAATGCGA 238
| |||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 187 CATATCAATCACACATATTATTCTACTCAGATTTATTATTTGAAAAGAAGAAAAATGCGA 246
Query 239 GGGaaaaaaaTAATAATCACAGGTGAAGATGTGAAGCTACTTGTGAAAATCATTGGTACA 298
|||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 247 GGGAAAAAGATAATAATCACAGGTGAAGATGTGAAGCTACTTGTGAATATCTTTGGTACA 306
Query 299 ATCGGAGTCACCAATGGTCGCCCATATCAATACAAGGTTGAAGCATGGACAAATGAAAAC 358
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 307 ATCGGAGTCACCAATGGTCGCCCATATCAATACAAGGTTGAAGCTTGGACAAATGAAAAC 366
Query 359 GAAAAATATGAAACAAAGGTTGTACCAACCGAAGGAGATCCCGAGTTCGATGAAGAGCTA 418
|| ||| ||||||||||||||||| |||||||||||||||| ||||| |||||||| ||
Sbjct 367 GAGAAACATGAAACAAAGGTTGTAGCAACCGAAGGAGATCCTGAGTTTGATGAAGAATTA 426
Query 419 CAAATTTTTCAAGATAAGAATTTTCCAGCCCAATCTTTATATGTAGATGTTTTCAAAACG 478
||| ||||||||||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct 427 CAACTTTTTCAAGATCAGAATTTTCCCGTAGAATCTTTATATGTAGATGTTTTCAAAACG 486
Query 479 AATTCAATTGGCACCTATTTCGTTGGGAGGGGAGTCACATTGTTGCCAACGGTTAAAGGG 538
||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 487 AATTCAACTGGTACCTATTTCGTTGGGAGAAGAGTCACATTGTTGCCAACGGTTAAAGGG 546
Query 539 GTTGATTTTTACCGTGAAGTTGAGCTCTCTGGTCCTGAGGAAACCGGATTTCTTCAATTG 598
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 547 GTTGATTTTTACCGTGAAGTTAACCTCTCTGGTCCTGAGGAAACCGGATTTCTTCAATTG 606
Query 599 TCACTTAATCTCATGGAATTCGAGATACTTGGTTATGTTTCTTCATGATTTATCATCTAC 658
||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 607 TCACTTACTCTCATGGAATTTGAGATACTTGGTTATGTTCCTTCATGATTTATCATCTGT 666
Query 659 ATGTGGTTGT-ATTT-TTAATTTGATATTGTTATGAATAATGAATAATGCATATTGATAA 716
|||||||||| | || ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 667 ATGTGGTTGTGAATTCTTAATTTGATATTGTTATGAATAATGAATAATGCATACTGATAA 726
Query 717 TAAGTTATCATAAATT 732
||||||||||||||||
Sbjct 727 TAAGTTATCATAAATT 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35515541929
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5