BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483133
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40760.1 | Symbols: | Rhodanese/Cell cycle control phosphat... 2241 0.0
> AT2G40760.1 | Symbols: | Rhodanese/Cell cycle control phosphatase
superfamily protein | chr2:17010048-17012067 FORWARD LENGTH=1526
Length=1526
Score = 2241 bits (1213), Expect = 0.0
Identities = 1425/1523 (94%), Gaps = 31/1523 (2%)
Strand=Plus/Plus
Query 1 CAATGCTACGGTTTTGCCACTGGAGATTTCCGCCGTCCCTCGCCGTCGCTAGAATGCTCT 60
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 CAATGCTACGGTTTTACCACTGGAGATTTCCGCCGTCCCTCGCCGTCGTTAGAATGCTCT 60
Query 61 CATCGCCACCACCGCTTCACTCACACTCTCCATTCTCCGGTGGCGTCGGT-AATTCGAGC 119
|||| ||||| || | |||||||||||||||||||||||| |||| | || ||||||| |
Sbjct 61 CATCACCACCCCCTCCTCACTCACACTCTCCATTCTCCGGCGGCGGC-GTGAATTCGAAC 119
Query 120 TCAATCGGTGGAAACTCCAAACCCGAGTTACTATTCCCTCAATCCCAACCCCAGAATCTC 179
||| ||||||||||||||||||||||||||| ||||||||||||||||||||| || |||
Sbjct 120 TCAGTCGGTGGAAACTCCAAACCCGAGTTACAATTCCCTCAATCCCAACCCCATAAACTC 179
Query 180 TCTTCCTCCCCTTCTTCCTCTCTGAAATCCACGGTTGCTTGTTCGAACGCCGGAGCTATA 239
|||||||| ||||| || ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 180 TCTTCCTCTCCTTCCTCTTCTCTGAAATCCACGGTGGCTTGTTCAAACGCCGGAGCTATA 239
Query 240 CGGAGAAGCATGACTACTGTTTCTCAGTCATTCTCAGATAGAACAGAGTCTAGCGATTCG 299
|||||||||||| |||||||||||||| |||||||||| ||||||||||||| ||||||
Sbjct 240 CGGAGAAGCATGGCTACTGTTTCTCAGGCATTCTCAGAGAGAACAGAGTCTATTGATTCG 299
Query 300 GATTTAGGCTCGCTCGTTGTGGTTTCATTCTACAAATTCGCTGATTTTCCTGACCATGCT 359
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 300 GATTTAGGCTCGCTCGTTGTAGTTTCATTCTACAAATTCGCTGATTTTCCTGAGCATGCT 359
Query 360 GATTTCAGGAAGCCCT-TGAAGGATCTCTGCGAAGAATTGCGTGTTTCAGGTGGAATCAT 418
|||||||||||| ||| | ||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 GATTTCAGGAAG-CCTCTCAAGGATCTCTGCGAAAAATTGCGTGTTTCAGGTGGAATCAT 418
Query 419 TCTTGCACCAGAAGGGATCAATGGAAGTATCTGTGGGATTCGTGAATCAGTGGA-GAGAG 477
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 419 TCTTGCACCAGAAGGGATAAATGGAAGTATCTGTGGGATTCGTGAATCAGTGGAGGA-AG 477
Query 478 TGTTGGCATTTATACAGAGTGATATCCGATTGAATGGTTTGAGGCAAGTGGAGACACCTG 537
||||||||||||||||||| ||| |||| || ||||||||||||||||||||||||||||
Sbjct 478 TGTTGGCATTTATACAGAGAGATGTCCGGTTAAATGGTTTGAGGCAAGTGGAGACACCTG 537
Query 538 TGAGTCCTGAACAAGAAGCAATCCACCATGGACATAGCAGTAGCTCTCCTCTTGCAGCTG 597
|||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 538 TGAGTCCTGAGCAAGAAGCAATTCACCATGGACATAGTAGTAGCTCTCCTCTTGCAGCTG 597
Query 598 GTGAAGATGCTCCCTTTAGATGGGATCACGTTAGGGTCAAACTCAAGAAAGAGATTGTTA 657
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 598 GTGAAGATGCTCCATTTAGATGGGATCATGTTAGGGTCAAACTTAAGAAAGAGATTGTTA 657
Query 658 CGCTTGGAATGCCTAGTGTCTCGCCAATTGAAAGAGTTGGAACATATGTGAGCCCCGAAG 717
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 658 CGCTTGGAATTCCTAGTGTCTCGCCAATTGAAAGAGTTGGAACATATGTGAGTCCCGAAG 717
Query 718 AATGGAACGAACTGATCAGTGATCCAGAAACTGTAGTGATCGATGTGCGTAATACCTATG 777
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 718 AATGGAACGAACTGATCAGTGATCCAGAAACTGTAGTGATTGATGTGCGTAATACCTATG 777
Query 778 AGACTAGAATTGGGAAGTTTAAAGGAGCTGTGGATCCATGTACCACAGCTTTCAGAAATT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AGACTAGAATTGGGAAGTTTAAAGGAGCTGTGGATCCATGTACCACAGCTTTCAGAAATT 837
Query 838 TCCCAACTTGGGTGGAGAATCAATTTGCATTGAAGCAAGAAGGCAATGAAACGCAAGCAA 897
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TCCCATCTTGGGTGGAGAATCAATTTGCATTGAAGCAAGAAGGCAATGAAACGCAAGCAA 897
Query 898 ATGTGGAGCAAGAAGAATGTTCTGAAA-C-C--A---------C-----TGAAAAACCGA 939
| |||||| |||| || | |||||||| | | | | |||||||||||
Sbjct 898 AGGTGGAGAAAGAGGATTTTTCTGAAATCACCCATAAAGAAGACAAAGCTGAAAAACCGA 957
Query 940 AGACGCTGCCACGAATTGCTATGTATTGCACTGGAGGAATCAGGTGTGAGAAAGCTTCAA 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AGACGCTGCCACGAATTGCTATGTATTGCACTGGAGGAATCAGGTGTGAGAAAGCTTCAA 1017
Query 1000 GCTTTCTTCTTAGCCAAGGTTTCGAAGAGGTGTATCATCTGAAAGGTGGGATATTAAAGT 1059
|| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1018 GCCTCCTTCTTAGCCAAGGTTTCGAAGAGGTATATCATCTGAAAGGTGGGATATTAAAGT 1077
Query 1060 ACCTTGAAGAAGTCCCTAAAACAGAGAGCTTGTGGGAAGGCGAATGCTTTGTGTTCGACA 1119
|||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 1078 ACCTTGAAGAAGTCCCTAAAACCGAGAGCTTATGGGAAGGGGAATGCTTTGTGTTCGACA 1137
Query 1120 AGCGTGTATCTGTGGAACATGGTCTAGCTCAAGGAACACATAAACTCTGCTATGGATGCA 1179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AACGTGTATCTGTGGAACATGGTCTAGCTCAAGGAACACATAAACTCTGCTATGGATGCA 1197
Query 1180 AGCAACCTATAAGTGATGAAGACATGGAAGCTCCAGAGTATGAGTATGGAGTTTCTTGTC 1239
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1198 AGCAACCTATAAGTGATGAAGACATGGAAGCTCCAGAGTACGAGTATGGAGTTTCTTGCC 1257
Query 1240 CTTACTGTTACTCCAAAAAATCCGAAGAGGAGAAAGAAAGGGCAAGAGCAAGGCAGACAC 1299
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1258 CTTACTGTTACTCCAAGAAATCAGAAGAGGAGAAAGAAAGGGCAAGAGCAAGGCAGACAC 1317
Query 1300 AGTTTGAGGAATGGGGTGTAATTGGTGGTCCGGACAAAGGTCGTCGACCCGCCACTAAAC 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AGTTTGAGGAATGGGGTGTAATTGGTGGTCCGGACAAAGGTCGTCGACCCGCCACTAAAC 1377
Query 1360 CAGATAGTCCAAGGAAGAAGAGCAATACAAAGCTTGGTTCTTCAATATAGAATGATGTTG 1419
| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1378 CTGATAGTCCAAGGAAGAAGATCAATGCAAAGCTTGGTTCTTCAATATAGAATGATGTTG 1437
Query 1420 TTTTGTTCTTCTTCTTGAAATCAAATGC-T-G---CATTGTTACATTAAAGAGTTTAAAC 1474
||||||||||||||||||||||| ||| | | ||| ||||||||||||||||||||
Sbjct 1438 TTTTGTTCTTCTTCTTGAAATCATTTGCATTGTTACATACTTACATTAAAGAGTTTAAAC 1497
Query 1475 GCCAATCA-TCAAGGCAATGATC 1496
|| ||||| | | ||||||||||
Sbjct 1498 GCTAATCAATGA-GGCAATGATC 1519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73794801150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5