BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483134

Length=434
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G40765.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   701    0.0  


> AT2G40765.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion, mitochondrial respiratory chain 
complex III; EXPRESSED IN: 24 plant structures; EXPRESSED 
DURING: 15 growth stages; Has 32 Blast hits to 32 proteins 
in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr2:17012198-17013325 FORWARD LENGTH=521
Length=521

 Score =  701 bits (379),  Expect = 0.0
 Identities = 419/438 (96%), Gaps = 4/438 (1%)
 Strand=Plus/Plus

Query  1    AAAAATTCCCCAAAATTGATTATCGTCATTTCGTTAAGGATCTTTGTGGGGTTTGATCGA  60
            ||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  1    AAAAATTCCGCAGAATTGATTATCGTCATTTCGTTAAGGATCTCTGTGGGGTTTGATCGA  60

Query  61   ATTTGATAGCGAA-G-gaga--gagagagagaTCGAAGCAGTGATGGCAGGAACATCTGG  116
            |||| |||||||| | ||||  ||||||||||| |||||||| |||||||||||||||||
Sbjct  61   ATTTCATAGCGAAGGAGAGAGTGAGAGAGAGATTGAAGCAGTAATGGCAGGAACATCTGG  120

Query  117  TTTGCTCAACGCCGTGAAGCCAAAGATCCAAACGATTGATATTCAGGCCGCCGCTGGATG  176
             ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ATTGCTCAACGCAGTGAAGCCAAAGATCCAAACGATTGATATTCAGGCCGCCGCTGGATG  180

Query  177  GGGAATCGCCGCCGCAGCTGGTGCCATCTGGGTCGTCCAACCATTTGGTTGGATAAAGAA  236
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GGGAATCGCCGCCGCAGCCGGTGCCATCTGGGTCGTCCAACCATTTGGTTGGATAAAGAA  240

Query  237  GACATTCATTGACCCACCTCCAACTGAAGAGAAGTGAGACATCACCAAGATTCAAGACTA  296
            |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct  241  GACATTCATTGACCCACCCCCAACTGAAGAGAAGTGAGATATCACCAAGATTCAAGACTA  300

Query  297  AGTGAAGAGTTTTCCAGTTTCTAAGTTTGTTATCGCCTCTTTGGCGTGGAGCTGAATAAA  356
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  301  AGTGAAGAGTTTTCCAGTTTCTAAGTTTGTTACCGCCTCTTTGGCGTGGAGCTGAATAAA  360

Query  357  TTTTGGTTCTTTTCTGGGGTTTTGTGGTTTCATTTCTTCAATGTAGTAGACTGATTTGTC  416
            ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||
Sbjct  361  TTTTGGTTCTTTTCTGGGGCTTTCTGGTTTCATTTCTTCAATGTAGTTGACTGATTTGTC  420

Query  417  TTCTCAAATGTTATAACA  434
            ||||||||||||||||||
Sbjct  421  TTCTCAAATGTTATAACA  438



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20609777090


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5