BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483136
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40780.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 952 0.0
> AT2G40780.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr2:17021505-17022916 FORWARD LENGTH=1054
Length=1054
Score = 952 bits (515), Expect = 0.0
Identities = 562/584 (96%), Gaps = 6/584 (1%)
Strand=Plus/Plus
Query 276 TTGTGAAAGTTTCGGA-TATTTGGAATTTGA-GTAGAAGAGATGAACAGAGGAAGAAGGA 333
|||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||
Sbjct 331 TTGTGAAAGTTTCGGACT-TTTGGAATTTGAGGTAGAAGAGATGAACAGAGGAAGAAGGA 389
Query 334 ATCTGAAACAAGCGGCGTCAGAGCAGGATTTCACGCTTGAGGAATGTCAGAGCATTGCCC 393
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 390 ATCTGAAACAAGCGGCGTCGGACCAGGATTTCACGCTTGAGGAATGTCAGAGCATTGCCC 449
Query 394 AAGTCGTCTCTCTCAGAGGTTCCAATCAAATTGAGATAATGGATGCAAAAGGAGAGAACT 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 AAGTCGTCTCTCTCAGAGGTTCCAATCAAATTGAGATAATGGATGCAAAAGGAGAGAACT 509
Query 454 CATTAGCTTTGTTTCCAGCTAAGTTTCGTGAGAGCATGTGGATCAGACGAGGAAGCTTTG 513
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 510 CATTAGCTTTGTTTCCAGCCAAGTTTCGTGAGAGCATGTGGATCAGACGAGGAAGCTTTG 569
Query 514 TAGTGATTGACCATACAGGAAAGGAAAAGGCTCAAGAGTCTGGTAGTAAAGTTACATCTA 573
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 570 TAGTGATTGACCATACAGGAAAGGAAAAGGCTCAAGAGTCTGGTAGCAAAGTTACATCTA 629
Query 574 TTGTCTGTAAAGTTCTATTCTTTGAGCAAGTCCGTCTCCTTCAAAAGTCCCCGGAATGGC 633
|||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 630 TTGTATGTAAAGTTCTATTCTTTGAGCAAGTCCGTCTTCTTCAAAAGTCTCCGGAATGGC 689
Query 634 CGGAAATCTTCAAAGATACTAAACCGATTCCAGCTGATAAAAGCTCACCCATTGAACAGC 693
| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 690 CAGAAATCTTCAAAGATACTAGACCGATTCCAGCTGAGAAAAGCTCACCCATTGAACAGC 749
Query 694 ATGAAGATGACGGTGAAATTGATTCGAGTGATGATGATGATGGCATGCCCCCATTGGAAG 753
||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||
Sbjct 750 ATGAAGATGACGGTGAAGTTGATTCGAGTGATGATGATGATGGTATGCCTCCATTGCAAG 809
Query 754 CAAACACAAACAGATTGAGACCGTTTGGGGTGCAA-TGTGATGCAGAAACAGATTCAGGG 812
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 810 CAAACACAAACAGATTGAGACCGTTTGGGGTG-AAGTGTGATGCAGAAACTGATTCAGGG 868
Query 813 TCAGATTCCGATTCATAGAA-CATCCAGTACATTTCTTTTCGCA 855
|||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 869 TCAGATTCCGATTCATAGAAACATCCGGTACATTTCTTTTCGCA 912
Score = 335 bits (181), Expect = 5e-91
Identities = 258/291 (89%), Gaps = 21/291 (7%)
Strand=Plus/Plus
Query 2 ATTCCGAACCTGTGAAGTGAAAGAGAATTCG------A-TC--AAA---CGAATCGACGG 49
||||||||||||||||||||||||||||||| | || ||| |||||||||||
Sbjct 6 ATTCCGAACCTGTGAAGTGAAAGAGAATTCGTTCAAAATTCAGAAATTGCGAATCGACGG 65
Query 50 AGA-TGGTGAAGGAGTGGAA-TTCAAAGCGCCGGAGAAGATTCATAGACCGCCGCGTG-- 105
||| | || |||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 66 AGACT-ATGGAGGAGTGGAATTTC-AAGCGCCGGAGAAGATTAATAGACCGCCGCGTGAT 123
Query 106 ATAATAACGAATTGCCGGTTTATCTGCCAATTCGTTTGCACCGACGTGGCTTGTGAATGA 165
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 124 ATAATAACGTATTGCCGGTTTATCTGCCAATTCGTTTGCACCGACGTGGCTTGAGAATGA 183
Query 166 CAATAATACCCTCAGCCTATAAATATAAATAACGAAATTACCCCCTCTTCTCTATTGGAA 225
||||| |||||||||| | |||||| ||||||||||| |||| |||||||||||||||||
Sbjct 184 CAATAGTACCCTCAGCTTTTAAATA-AAATAACGAAACTACCTCCTCTTCTCTATTGGAA 242
Query 226 CTTA-AGCGATTCCAGTAAAACGGCACACAACTGCAAAACCCTAATCTCAA 275
| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 C-TATTCCGATTCCAGTAAAACGGCACACAACTGCAAAACCCTAATCTCAA 292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41694342010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5