BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483142
Length=2815
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40820.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2294 0.0
AT2G40815.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 1227 0.0
> AT2G40820.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: myosin heavy chain-related (TAIR:AT3G56480.1); Has
203 Blast hits to 195 proteins in 64 species: Archae - 3;
Bacteria - 13; Metazoa - 26; Fungi - 15; Plants - 101; Viruses
- 0; Other Eukaryotes - 45 (source: NCBI BLink). | chr2:17036463-17040063
REVERSE LENGTH=1908
Length=1908
Score = 2294 bits (1242), Expect = 0.0
Identities = 1427/1515 (94%), Gaps = 17/1515 (1%)
Strand=Plus/Plus
Query 21 TCTCTCTGTTTCTGGGGTTGGCTTAAAAAACTGACAAGATCCTGACAATGACTAAAGTAT 80
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 79 TCTCTCTGTTTCTGGGGTTGGCTT-AAAAACTTACAAGATCCTGACAATGACTAAAGTAT 137
Query 81 GTCCTAAAACAGAAGAAAAGAGAGTGGTGTGTGAAGCACTGGTTGAACCAATTTCAGCAG 140
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 138 GTCCTAAAACAGAAGAAAAGAGAGTGGTGTCTGAAGCTGTGGTTGAACCAATTTCAGCAG 197
Query 141 ACGTGAGCTTTGCTTCTAATCATTTTCCATTATACAAGTTAGGACCTGATGATCAGATTG 200
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 198 ATGTGAGCTTTGCTTCTAATCATTTTCCAACGTACAAGTTAGGACCTGATGATCAGATTG 257
Query 201 TTGATGAACCTGA-GCAAGATGATAAAGGTCCATCTGTCAAAGATGTCGTCGAT-AGAGA 258
||||||||||||| | |||||||||||| ||||||||||||||||||||||| | || ||
Sbjct 258 TTGATGAACCTGATG-AAGATGATAAAGTTCCATCTGTCAAAGATGTCGTCGGTAAG-GA 315
Query 259 GACCGGAGATTTGTCAGATCAGCACAAGAAGCTTTCAGTTCGTGATCTAGCTTGCAAATT 318
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 316 GACCGGAGATTTGTCAGATCAGCACAAGAAGCTTTCTGTTCGTGATCTCGCTTGCAAATT 375
Query 319 CGACAAGAATTTAGCTGCAGCTTCTAAATTAGTTGACGAGGCAAAGTTAAATGAGGTGAC 378
|||||||||||||||||||||||||| |||||||| |||||||||||||| || |||||
Sbjct 376 TGACAAGAATTTAGCTGCAGCTTCTAAGTTAGTTGATGAGGCAAAGTTAAACGATGTGAC 435
Query 379 TTCTTTGGAAGGACATGTTATGCTAAAGAAACTTAGGGATGCTCTAGAAACTATGAGAGG 438
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 436 TTCTTTGGAAGGACATGTTATGCTAAAGAAACTTAGGGATGCTTTAGAAACCATGAGAGG 495
Query 439 CCGTATGGATGGGCGAAACAGAGAAGCAGTGGAAAAAGCTATCTCCATGGTTGAGGCGCT 498
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 496 TCGTATGGATGGAAGAAACAGAGAAGCAGTGGAAAAAGCTATCTCCATGGTTGAGGCACT 555
Query 499 AGCCGTTAAGTTAACTCAAAATGAAGGTGAACTAATTCAAGATAAGTTTGAAGTGAAGAA 558
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 556 AGCCGTTAAGTTAACTCAAAATGAAGGTGAACTAATTCATGATAAGTTTGAAGTGAAGAA 615
Query 559 ACTGGCAAGCTTCCTCAAGAAGGCTTCAGATGATGCGAAGAAGTTAGTAAACCAAGAAAA 618
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 616 ACTGGCAAGCTTCCTCAAGAAGGCTTCAGACGACGCGAAGAAGTTAGTAAACCAAGAAAA 675
Query 619 GTCGTTTGCTTGTGCTGAAATAGAGAGTGCACGGGCTCTTGTGATGAAACTTGGAGGGGA 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 676 GTCGTTTGCTTGTGCTGAAATAGAGAGTGCACGGGCTCTTGTGATGAAACTTGGAGGTGC 735
Query 679 ATTCCAAGAACAGGAGCTTTGTTTTAAAGCTTCTAGAGATCAGGGACCTAATGTGGAGAA 738
||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 736 ATTTGAAGAACAGGAGCTTTGTTCTAAAGCTTCTAGAGATCAGGGACCGAATGTGGAGAA 795
Query 739 ATTAGTTGAGGAGGTTCAGGAGGCTAGACGAATCAGACAGATGCATAAACCAACCAAGGT 798
||| ||||||||||||||||||||||||||||| |||| | ||||||||||||||| |||
Sbjct 796 ATTGGTTGAGGAGGTTCAGGAGGCTAGACGAATTAGACGGTTGCATAAACCAACCATGGT 855
Query 799 GATTGGTATGCAACATGAGCTTCGTGATTTAAAGAGTCAAATCCAAGAGAAGTCTGCATA 858
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GATCGGTATGCAACATGAGCTTCGTGATTTAAAGAGTCAAATCCAAGAGAAGTCTGCATA 915
Query 859 TTCCGTTAAGCTTCAAAGAGAGATAACAATAATCAAGAAAGCCGAGGGGTCCAAGTCATG 918
||||||||| ||||||||||||||| ||||||| |||||||| |||||||||||||||||
Sbjct 916 TTCCGTTAAACTTCAAAGAGAGATAGCAATAATTAAGAAAGCTGAGGGGTCCAAGTCATG 975
Query 919 TCCATATGTTTTGGATGGTGCACAAAGTCTTGGCTCGTGCCTAAGAATCCGTGCCTCGTC 978
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 976 TCCGTATGTTCTGGATGGTGCACAAAGTCTTGGCTCGTGCCTAAGAATCCGTGCCTCCTC 1035
Query 979 AGACAGTGGTTTAGATATTTCCAAATGTTCAATTCAGTGGTACCGTGCAGCATCCGAGTC 1038
|||||||||| |||||||||||||||| ||||| || ||||||||||||||||| |||||
Sbjct 1036 AGACAGTGGTATAGATATTTCCAAATGCTCAATCCATTGGTACCGTGCAGCATCTGAGTC 1095
Query 1039 TAGTCGAAGAGAAGCTATATCTGGTGCCAACCGGTCCGTATATGCTCCAGAACCATTTGA 1098
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1096 TAGTCGAAGAGAAGCTATATCTGGTGCCAACCGGTCAGTATATGCTCCAGAACCATTTGA 1155
Query 1099 TGTCGGGCGAGTGATACAAGCAGACATTGTTTCAAACGGCCAGAAGTTCACCGTTACAAC 1158
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1156 TGTCGGGCGAGTGATACAAGCAGACATTGTTTCAAATGGCCAGAAGTTCACCGTTACAAC 1215
Query 1159 GGATGGTCCAATTAATACTGCTGCTGGCTTGCAGTCACGCGTTGAAGCACTACTGCGAAA 1218
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 1216 CGATGGTCCAATTAATACTGCTGCTGGCTTGCAGTCACGCGTTGAATCACTCCTGCGCAA 1275
Query 1219 ATCTAACAGTGAATTCACCGTGATTATATCACAAATGAATGGACAAGACCATGCATCACG 1278
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1276 ATCTAACAGTGAATTCACCGTGGTTATATCACAGATGAATGGACAAGACCATGCATCACG 1335
Query 1279 ATCCCACGTCTTTACTGTTGGAAAGGCGAGAATAAAGCTGTCCCGAGGATGGATCACAAA 1338
|||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1336 ATCCCATGTATTTACTGTTGGAAAGGCGAGGATAAAGCTGTCCCGAGGATGGATCACAAA 1395
Query 1339 GGCTAGAGAAATATATTCAACCTCCATGCAGCTTTATTTGAAATTTCTTTCTTTCAAAGG 1398
||||||||||||||||||||||||||||||||| | | || | | |||
Sbjct 1396 GGCTAGAGAAATATATTCAACCTCCATGCAGCTCTGTG-GAG-TG----------AGAGG 1443
Query 1399 CAATGCTAATGTTCCTGCAAAGGCATTGTTCTGGCAACTAAGAAAGGGTCTAACTTTCTT 1458
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1444 CAATGCTAACGTTCCTGCAAAGGCATTGTTCTGGCAACTTAGAAAGGGTCTAACTTTCTT 1503
Query 1459 ACTAACTTTCGAGTCAGAGCAAGAACGTAATGCAGCCATAGTACTCGCCCGAACATATGC 1518
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1504 ACTAACTTTCGAGTCAGAGCAAGAACGTAATGCAGCCATAGTACTCGCACGAACATATGC 1563
Query 1519 ATATGATTGCAATGT 1533
||||||||| |||||
Sbjct 1564 ATATGATTGTAATGT 1578
> AT2G40815.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr2:17034541-17036208 REVERSE LENGTH=1397
Length=1397
Score = 1227 bits (664), Expect = 0.0
Identities = 743/781 (95%), Gaps = 5/781 (1%)
Strand=Plus/Plus
Query 1614 TTTTGTCTTCTCGTGAGTTCGACTCCAAATCCATGGGGAAGATCCTCGTAGAAATCTGTT 1673
|||||||||||||||||||| | ||||||||||||||||||||||| || |||||||||
Sbjct 67 TTTTGTCTTCTCGTGAGTTCAAATCCAAATCCATGGGGAAGATCCTTGTGGAAATCTGTA 126
Query 1674 TGATATCAGCTCGAGGGCTCCGAGTCGGAATCGGAATCGGATCGTCTCTACTGAAACACC 1733
|||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||
Sbjct 127 TGATATCAGCTCGAGGGCTCCGTGTGGGAATTGGAATCGGATCCTCTCTACTGAAACACC 186
Query 1734 AATGGTACGCCGTTGGGTGGCTTGATCCAGAAGACAAGTACTGCACCACAATCGATGCTT 1793
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 187 AATGGTACGCCGTTGGTTGGCTTGATCCAGAAGACAAATACTGCACCACAATCGATGCTT 246
Query 1794 CAAGATCAGACAATCCTGTCTGGAGAACAAAGTTTGCTACTTTACTCGATGATT-CATCG 1852
||||| ||||||||||||||||||||||||||||||||||||| |||||||||| || ||
Sbjct 247 CAAGAGCAGACAATCCTGTCTGGAGAACAAAGTTTGCTACTTTGCTCGATGATTCCA-CG 305
Query 1853 ATTCAAGATACGAAGTTGGCTTTGCAAGTCGAGGTTTATAGCAGAGAACCCTTGTTCTTA 1912
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 ATTCAGGATTCGAAGTTGGCTTTGCAAGTCGAGGTTTATAGCAGAGAACCCTTGTTCTTA 365
Query 1913 AGGAAGAGGCTTCATGGCTCTGCTACTGTTTCCTTGAAGGAGTTTCTGACTAAGTATAAG 1972
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 366 AGGAAGAGGCTTCATGGCTCTGCTACTGTTTCTTTGAAGGAGTTTCTGACTAAGTATAAG 425
Query 1973 CAACAACAGAGTTCTTCCAAACCTGTAATTGAAGAAACTGGAAGCTATCAGCTTAGGAAG 2032
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 426 CAACAACAGAGTTCTTCGAAAGCTGTAATTGAAGAAACTGGAAGCTATCAGCTTAGGAAG 485
Query 2033 ACGAACTCGAGCAAGCCTCAGGGTTTTGTCGATGTTTCGATACGTATATCCGCAGAACGA 2092
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 486 ACGAACTCGAGCAAGCCTCAGGGTTTTGTCGATGTGTCGATACGTATATCTGCAGAGCGA 545
Query 2093 GAGGATTTTGGGGGTTTTACTGGAGATTTTGGAGGAGTCATGCTTTCAAACAACTCGGAT 2152
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 546 GAGGATTTTGGGGGTTTTACTGGAGATTTTGGAGGAGTCATGCTCTCGAACAACTCAGAT 605
Query 2153 TACAACACTTCAGGACAGGATTACATGGCTGGTTCATCGCAGTATCCATTTGCTTCATTG 2212
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 606 TACAACACTTCAGGACAGGATTACATGGCTGGTTCATCGCAGTATCCATTTGCTCCAATG 665
Query 2213 GACCAGTCAAACCCATTCTCAGTTCCGCCATCATATAACCACCACTCATCAATGCCTAAC 2272
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 666 GACCAGTCAAACCCATTCTCAGTTCCCCCATCATATAACCACCACTCATCAATGCCTAAC 725
Query 2273 CCTCCAATGAACAACACCAACCCACAAATGCAACAGCCTTACTATCCTCCACCAATGCAG 2332
|||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 726 CCTCCAATGACCAACACCAACCCACAAATGCAACAACCTTACTATCCTCCACCGATGCAG 785
Query 2333 CCACCACCACC---TATGAACTCAGGGTACATGCCTACATACATCCCGAAATCAGAGAAT 2389
||||||||||| ||||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct 786 CCACCACCACCACCTATGAACTCAGGGTACATGCCTACATACATCCCCAAATCTGTGAAT 845
Query 2390 G 2390
|
Sbjct 846 G 846
Score = 422 bits (228), Expect = 1e-116
Identities = 318/356 (89%), Gaps = 27/356 (8%)
Strand=Plus/Plus
Query 2256 ACTCATCAATGCCTAACCCTCCAATGAACAACACCAACCCACAAATGCAACAGCCTTACT 2315
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 847 ACTCATCAATGCCTAACCCTCCAATGAACAACACCAACCCACAAATGCAACAACCTTACT 906
Query 2316 ATCCTCCACCAATGCAGCCA-C-C-ACCACCTATGAACTCAGGGTACATGCCTACATACA 2372
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 907 ATCCTCCACCAATGCAGCCAGCACCACCACCTATGAACTCAGGGTACATGCCTACATACA 966
Query 2373 TCCCGAAATCAGAGAATGTTACGAACATTCCATC---ATCATC-T--GGAGGAGTACTAG 2426
|||| || |||||||||||||||||||||||||| |||||| | |||||||||| ||
Sbjct 967 TCCCTAATTCAGAGAATGTTACGAACATTCCATCGTCATCATCATCTGGAGGAGTACCAG 1026
Query 2427 GAGGAGCGGGAAGAGGATATGCAAGGCCTGGACCAGGGTTTGCTGTAGGA-T------TG 2479
|||| ||||||||||||||||| ||| |||| |||||||||||||||||| | ||
Sbjct 1027 GAGGGGCGGGAAGAGGATATGCTAGGACTGGCCCAGGGTTTGCTGTAGGAGTGGGAGCTG 1086
Query 2480 G-G-AG---------CTGGTGCAGCTTTATATGGAGGCGAGTATATGTCAGGAATCGACT 2528
| | || |||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1087 GTGCAGTAGTTGGAGCTGGTGCAGCTTTATATGGAAGCGAGTTTATGTCAGGAATCGACT 1146
Query 2529 TACCTTCAAGCTTACCTCACCCAAGTGTCTCCATTTCCATTGATCCTCCATTTTGA 2584
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1147 TACCTTCAAGCTTACCTCACCCAAGTGTCCCCATTTCCATTGATCCTCCATTTTGA 1202
Score = 366 bits (198), Expect = 6e-100
Identities = 220/231 (95%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 2585 ATGTCAGGAATCGACTTACCTTCAAGCTTACCTCATCCAAGTGTCTCCATTTCCATTGAT 2644
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1131 ATGTCAGGAATCGACTTACCTTCAAGCTTACCTCACCCAAGTGTCCCCATTTCCATTGAT 1190
Query 2645 CCTCCATTTTGATGCAGCAACAGCTCGATTCAATATGGCTGCATTGTGAGATTCTCTGAA 2704
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1191 CCTCCATTTTGATGCAGCAACAGCTCGATTCAATATGGCTGCATTGTGAGATTATCTGAA 1250
Query 2705 ACATTGTAGATTATTCGTATTTGATATGATAAGAGATCCCAGATTCAAGAAACATATAAA 2764
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1251 ACATTGTAGATGATTCGTATTTGATATGATAAGACATCCCAGATTCAAGAAACATATAAA 1310
Query 2765 ATGGAGGCCTCAGGTTTCCTGGGAATTCGATTGAACTCTTTATTCAATTGT 2815
||| ||||||| |||||| |||||||||||||||||| ||| ||| |||||
Sbjct 1311 ATGAAGGCCTCGGGTTTCTTGGGAATTCGATTGAACTGTTTTTTCTATTGT 1361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139865437084
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5