BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483145
Length=1357
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40830.2 | Symbols: RHC1A | RING-H2 finger C1A | chr2:170426... 1740 0.0
AT3G56580.2 | Symbols: | RING/U-box superfamily protein | chr3... 412 3e-114
> AT2G40830.2 | Symbols: RHC1A | RING-H2 finger C1A | chr2:17042676-17044857
FORWARD LENGTH=1551
Length=1551
Score = 1740 bits (942), Expect = 0.0
Identities = 1061/1118 (95%), Gaps = 10/1118 (1%)
Strand=Plus/Plus
Query 98 AGGTTTATAACTGAGACCTGTCAAATAAGCTAAAGCTTCTTCTAAGGGCTTCAAGGAAAG 157
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 216 AGGTTTTTAACTGAGACCTGTCAAATAAGCTAAAGCTTCTTCTAAGAGCTTCAAGGAAAG 275
Query 158 GATTTGCATTGTTGTGCTCTTGTTTGTGTCCACAGAAGGAAAGAAGAGTGAGAAGCTCAG 217
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 CA-TTGCATTGTTGTGGTCTTGTTTGTGTCCACAGAAGGAAAGAAGAGTGAGAAGCTCAG 334
Query 218 GATGTCAAGCAGTCGAAATACCCACTGGTGTCACAGATGCCAGCGTGCTGTCCGGCTTCA 277
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 335 GATGTCAAGCAGTCGAAATACCCACTGGTGTCACAGATGTCAGCGTGCTGTCCGCCTTCA 394
Query 278 CGGCCAAGATCCTGTATGCTCTTATTGCGGAGGTGGATTTGTTGAAGAACTTGATATGGC 337
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 395 CGGCCAAGAGCCTGTATGCTTTTATTGCGGAGGTGGATTTGTTGAAGAACTTGATATGGC 454
Query 338 TGAAGCCAGCCCCTTTGATATGTTTAGAGCTCACAGTCACAGGGGTGTTGTAGAACGTGA 397
| |||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 455 TCAAGCCAGCCCCTTTGATATGTTTAGA--TC-C---CACAGGGGTGTTGTAGAACGTGA 508
Query 398 TCCGACTTTTGATCTCATGGATGCTTTCTCTGCGTTTATGAGGAATCGCTTAGCCGAAAG 457
|| ||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||
Sbjct 509 TCAGACTTTTGATCTCATGGATGCTTTCTCTGTGTTTATGAGGAACCGCTTAGCTGAAAG 568
Query 458 GAGCCACGACAGAGAAATCAGGGGAAGAACCATCAGTTCAGGTCCTGAAAACTTTCCTGG 517
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 569 GAGCCACGACAGAGAAATCAGAGGAAGAACCATCAGTTCAGGTCCTGAAAACTTTCCTGG 628
Query 518 TCTGGCCCCTTTATTGATCTTTGGTGGTCAGGTTCCTTATAGACTATCTGGAGACAATGC 577
|||||||||||| ||||||||||||||||| || |||||||||||| |||| ||||||||
Sbjct 629 TCTGGCCCCTTTGTTGATCTTTGGTGGTCAAGTCCCTTATAGACTAACTGGCGACAATGC 688
Query 578 AGTTGAAGCCCTCTTCAATGGCGGATCACCTGGCATTGGCATCACACGTGGTAACACCGG 637
||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 689 AGTCGAAGCCCTCTTCAATGGCGGCTCCCCTGGCATTGGCATCACACGTGGTAACACCGG 748
Query 638 CGACTACTTCTTCGGTCCCGGTCTTGAAGAATTGTTCGAGCAGCTTTCAGCTGGCACTAC 697
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 749 CGACTACTTCTTCGGTCCCGGCCTTGAAGAATTGTTCGAGCAGCTTTCAGCTGGCACTAC 808
Query 698 TCGCCGAGGTCCACCACCCGCACCGAGATCATCAATAGACGCATTGCCAACCATCAAGAT 757
||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 809 TCGCCGAGGCCCACCACCCGCACCGAGATCAGCAATAGACGCATTGCCAACTATCAAGAT 868
Query 758 TGCGCAGAGGCATCTCAGATCATCAGACTCGAACTGTCCTGTGTGCAAAGACGAATTCGA 817
|||||||||||||| || ||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 869 CGCGCAGAGGCATCTTAGGTCATCGGACTCGAATTGTCCCGTGTGCAAAGACGAATTCGA 928
Query 818 ACTGGGATCAGAAGCAAAACAGATGCCATGCAACCACATCTATCATTCTGACTGCATTGT 877
||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 929 ACTGGGATCAGAAGCGAAACAGATGCCGTGTAACCACATCTATCATTCTGACTGCATTGT 988
Query 878 CCCGTGGCTGGTTCAGCACAACTCTTGCCCGGTCTGTCGCCAAGAGCTACCATCAGCTAG 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 CCCGTGGCTGGTTCAGCACAACTCTTGCCCGGTCTGTCGCCAAGAGCTACCATCAGCTAG 1048
Query 938 AGGACCTTCAGGCAGTCAAAACAGAACCACC---ACCAGAAACTACAGAAGTAGTAGTAG 994
||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1049 CGGACCTTCAAGCAGTCAAAACAGAACCACCCCTACCAGAAACTACAGAAGCAGTAGTAG 1108
Query 995 TAATAGCAGTAGTAACAATCGTGAGAACGGCAATGAAAGAAGGAATCCTTTCTCTTCCTT 1054
|| ||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1109 TAGTAGTAGTAGTAACAGTCGTGAGAACGGGAATGAAAGAAGGAATCCTTTCTCTTCCTT 1168
Query 1055 TTGGCCATTCCGTTCGTCAGGTTCAAGCTCAAGCTCCAGTCAAAACCGTGGAGGCACAAG 1114
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1169 CTGGCCATTCCGTTCGTCAGGTTCAAGCTCAAGCTCCACTCAAAACCGTGGAGGCACAAG 1228
Query 1115 AAACTCAGACACAACCGATGAGAACCATAACTACCATCAACAGCAACATCAACAATCATA 1174
|||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 AAACTCGGATACAAGCGATGAGAACCATAACTACCATCAACAGCAACATCAACAATCATA 1288
Query 1175 TATGGGTTACAGTGGCTGGCCTTTTGATTACTAAAAGT 1212
||||||||||||||||||||||||||||||||||||||
Sbjct 1289 TATGGGTTACAGTGGCTGGCCTTTTGATTACTAAAAGT 1326
Score = 134 bits (72), Expect = 3e-30
Identities = 95/106 (90%), Gaps = 1/106 (1%)
Strand=Plus/Plus
Query 1202 TTACTAAAAGTATGCTTATGATTCTGTGTCTGCCTTGTGCATCCCTCTTTAtctctctct 1261
||||| ||| ||||||| |||||||| | |||||||||| || |||| ||||||||||
Sbjct 1371 TTACTTAAA-TATGCTTGTGATTCTGCATATGCCTTGTGCTTCACTCTCTATCTCTCTCA 1429
Query 1262 ctctctTTTATCAACATAAATAATGGAGAACTGTAATTGTTACTGT 1307
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1430 CTCTCTTTTATCAACATAAATAATGGAGAACTGTATTTGTTACTGT 1475
> AT3G56580.2 | Symbols: | RING/U-box superfamily protein | chr3:20961574-20963744
FORWARD LENGTH=1397
Length=1397
Score = 412 bits (223), Expect = 3e-114
Identities = 476/593 (80%), Gaps = 37/593 (6%)
Strand=Plus/Plus
Query 374 TCACAGGGGTGTTGTAGAACGTGATCCGACTTTTGATCTCATGGATGCTTTCTCTGCGTT 433
|||||||| ||||| || |||||||| || |||||||||||||| |||||||| || ||
Sbjct 347 TCACAGGGATGTTG-AG--CGTGATCCAACCTTTGATCTCATGGAAGCTTTCTCAGCCTT 403
Query 434 TATGAGGAA-TCGCTTAGCCGAAAGGAGCCACGACAGAGAAATCAGGGGAAGAACCATCA 492
||||| ||| || ||||| ||||| ||| | ||| |||||||||| ||||| | | |
Sbjct 404 TATGA-GAAGCCGTTTAGCTGAAAGAAGCTATGACCGAGAAATCAGCGGAAG-A-C-TTG 459
Query 493 G-T-T-CAGGTCCTGAAAAC-TTTCCTGGTCTGGCCCCTTTATTGATCTTTGGTGGTC-A 547
| | | | ||| |||||| | |||| | |||| ||| |||||||||||||||| | |
Sbjct 460 GCTCTGCGGGTTCTGAAAGCTTTTCAAACT-TGGCTCCTCTATTGATCTTTGGTGGCCAA 518
Query 548 GGTTCC-TT--ATAGACTATCTGGAGACAAT-G--CAGTTGAAGCCCTCT-TCAATGGCG 600
| | || || || | || ||| || ||| | ||||||||| ||| | |||||||||
Sbjct 519 GCTCCCTTTCGATTGGCT-GGTGGTGATAATAGTTCAGTTGAAG-CCTTTGTCAATGGCG 576
Query 601 GATCACCTGGCATTGGCATCACACGTGGTAAC-A--CCGGCGACTACTTCTTCGGTCCCG 657
| ||||||| ||||| ||| ||||||| | | | |||| ||||| || || || ||||
Sbjct 577 CAGCACCTGGAATTGGTATCGCACGTGGCACCAATGCCGGAGACTATTTTTTTGGACCCG 636
Query 658 GTCTTGAAGAATTG-TTCGAGCAGCTTTCAGCTGGCACTAC-TCGCCGAGGTCCACCACC 715
||||||||||| || || || |||||||| | |||||| | || |||||| ||||||||
Sbjct 637 GTCTTGAAGAACTGATT-GAACAGCTTTCCTCAGGCACT-CATCACCGAGGCCCACCACC 694
Query 716 CGCACCGAGATCATCAATAGACGCATTGCCAACCATCAAGATTGCGCAGAGGCATCTC-A 774
||||||| ||||||||| || |||||||||||||||||||| | |||| ||||||| |
Sbjct 695 AGCACCGAAATCATCAATTGATGCATTGCCAACCATCAAGATCACACAGAAGCATCTCAA 754
Query 775 GATCATCAGACTCGAACTGTCCTGTGTGCAAAGACGAATTCGAACTGGGATCAGAAGCAA 834
| ||||||||||| |||| || || ||||||||||| ||||||||| |||||||||||
Sbjct 755 G-TCATCAGACTCTCACTGCCCGGTTTGCAAAGACGAGTTCGAACTGAAATCAGAAGCAA 813
Query 835 AACAGATGCCATG-CAACCACATCTATCATTCTGACTGCATTGTCCCGTGGCTGGTTCAG 893
|||||||||| || | |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 814 AACAGATGCCGTGTC-ACCATATCTATCATTCTGACTGCATTGTCCCGTGGCTGGTTCAG 872
Query 894 CACAACTCTTGCCCGGTCTGTCGCCAAGAGCTACCATCAGCTAGAGGACCTTC 946
|| ||||| ||||| |||||||| ||||| | ||||| | |||||| ||||
Sbjct 873 CATAACTCATGCCCAGTCTGTCGTAAAGAGTTGCCATC--C-AGAGGATCTTC 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66816925395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5