BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483147
Length=2080
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40850.1 | Symbols: ATPI4K GAMMA 1, PI4K GAMMA 1 | phosphoin... 3376 0.0
> AT2G40850.1 | Symbols: ATPI4K GAMMA 1, PI4K GAMMA 1 | phosphoinositide
4-kinase gamma 1 | chr2:17051123-17053292 FORWARD
LENGTH=2080
Length=2080
Score = 3376 bits (1828), Expect = 0.0
Identities = 2002/2086 (96%), Gaps = 12/2086 (1%)
Strand=Plus/Plus
Query 1 aaaaaataagaaaaccaaaaaaaagaaaGGAGGAAGAAGTATCGTTTCGAAAGAGGGGAG 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAATAAGAAAACAAAAAAAAAGAAAGGAGGAAGAAGTATCGTTTCGAAAGAGGGGAG 60
Query 61 TCTCAGGaaaaaaaGGACAG-AtttttttCCGGTGACAGTGTCGGTGTCTCTGACGCTCC 119
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCAGGAAAAAAAGGACAGAATTTTTTTCCGGTGACAGTGTCGGTGTCTCTGACGCTCC 120
Query 120 TCTCTGTTTTTCAATCTTTCTCCGTCTCTCCCTGAATGCCTTCATCCGTATTCAGGCAAA 179
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 121 TCTCTG-TTTTCAATCTTTCTCCGTCTCTCCCTGAATGCCTTCGTCCGTATTCAGGAAAA 179
Query 180 TTGCGGCGATTCATGGTTGGAGGAGCGAATACTTAAAGGGCACAATGGATTCAAGCGAAG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTGCGGCGATTCATGGTTGGAGGAGCGAATACTTAAAGGGCACAATGGATTCAAGCGAAG 239
Query 240 CAAAGGACACACCATCTTGTGGCTGTATATAGATCCAAGTTGATTTGTAGGTTTTTGaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAAAGGACACACCATCTTGTGGCTGTATATAGATCCAAGTTGATTTGTAGGTTTTTGAAA 299
Query 300 aaaaaTACG-AAtttttttttAGTTGTGTAAATATATAAATAGGAGTGCCAACAAAGTTT 358
||||||||| |||||| ||||||||||||||||||||||||||||||||||| | |||||
Sbjct 300 AAAAATACGAAATTTTGTTTTAGTTGTGTAAATATATAAATAGGAGTGCCAA-AGAGTTT 358
Query 359 TGGCATGAATTGCTTGGCTACGACCATAATCATCACCTGCAAGCCCACATTGATCTCGGA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGGCATGAATTGCTTGGCTACGACCATAATCATCACCTGCAAGCCCACATTGATCTCGGA 418
Query 419 TATGGCCGTGGCTTTTGATCCTTTCAGTGACCAGTTCCCTTACTTTAACCGATCCTCTCA 478
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 TATGGCCGTGGCTATTGATCCTTTCAGTGACAAGTTCCCTTACTTTAACCGATCCTCTCA 478
Query 479 AAGATGCAGACTTCAATCCCTTACCAACCTTGACTTCAACTTCCTCGCGCAATCCTTTAA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AAGATGCAGACTTCAATCCCTTACCAACCTTGACTTCAACTTCCTCGCGCAATCCTTTAA 538
Query 539 TCATACGGTTGAAGATGACAACATCCATCGAAGTGTTTCCTCTCCTTG-TTTCTCCATAG 597
||||||| |||||||||||||||||||||| ||||||||||||||||| ||| |||||||
Sbjct 539 TCATACGTTTGAAGATGACAACATCCATCGTAGTGTTTCCTCTCCTTGCTTT-TCCATAG 597
Query 598 CTGCGTCTGCTAATATGGAGGAAGATCTCAAAGCAACCACGGCTCCACGGATTGAGATTC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTGCGTCTGCTAATATGGAGGAAGATCTCAAAGCAACCACGGCTCCACGGATTGAGATTC 657
Query 658 TTGGAGGACAGAGAGTGCCCACCGTTCGTGCCCTTGTGGCTGAGGTGACCATGGCTATTG 717
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 658 TTGGTGGACAGAGAGTGCCCACCGTTCGTGCTCTTGTGGCTGAGGTGACCATGGCTATGG 717
Query 718 TTTCTGGAGCTCAGCCTTTGCTTTTACCAAGTGGCATGGGAGGTGCTTATCTCTTGCAAA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTTCTGGAGCTCAGCCTTTGCTTTTACCAAGTGGCATGGGAGGTGCTTATCTCTTGCAAA 777
Query 778 CCGGAAAAGGACATAATATTGCTGTGGCTAAACCGGTTGATGAAGAGCCTCTAGCCTTCA 837
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 778 CCGGAAAGGGACATAACATTGCTGTGGCTAAACCGGTTGATGAAGAGCCTCTAGCTTTCA 837
Query 838 ATAATCCTAAAAAGTCCGGAAATTTGATGCTCGGGCAACCGGGAATGAAACACTCAATTC 897
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 838 ATAATCCTAAAAAGTCTGGAAATTTGATGCTCGGGCAACCGGGAATGAAACATTCAATTC 897
Query 898 CTGTTGGAGAAACGGGTATCCGAGAACTAGCTGCTTACCTTTTGGATTACCAAGGCTTCT 957
||||||| || ||||||||| ||||||||||||| ||||||||||||||||||||||| |
Sbjct 898 CTGTTGGCGAGACGGGTATCAGAGAACTAGCTGCCTACCTTTTGGATTACCAAGGCTTTT 957
Query 958 CTGGGGTTCCACCAACAGCATTGGTTAGTATCTCGCATGTCCCATTCCATGTCAGTGATG 1017
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 958 CTGGTGTTCCACCAACAGCATTGGTTAGTATCTCACATGTCCCATTCCATGTCAGTGATG 1017
Query 1018 CCTTCTCGTTCTCCTCCATGCCCTATAAAGTTGCTTCCTTGCAGCGATTTGTGGCTCATG 1077
||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1018 CCTTCTCTTTCTCCTCCATGCCCTATAAGGTTGCTTCCTTGCAGCGATTTGTGGGTCATG 1077
Query 1078 ATTTTGATGCAGGAGAATTGGGTCCAGGAAGCTTCACGG-TGACCTCCGTTCATAGGATT 1136
||||||||||||||||||||||||||||||||||||||| | || || ||||||||||||
Sbjct 1078 ATTTTGATGCAGGAGAATTGGGTCCAGGAAGCTTCACGGCT-ACTTCGGTTCATAGGATT 1136
Query 1137 GGAATACTTGATGTGAGACTCCTGAATCTTGACAGACATGCTGGAAATATGCTAGTGAAG 1196
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1137 GGAATACTTGATGTGAGACTCCTGAACCTTGACAGACATGCTGGAAATATGCTAGTGAAG 1196
Query 1197 AGATGTGACAAAAAAGAGGCTTATAATCGACTTGGGACCGCTGAGCTTGTGCCTATTGAT 1256
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AGATGTGACAAAAAGGAAGCTTATAATCGACTTGGGACCGCTGAGCTTGTGCCTATTGAT 1256
Query 1257 CATGGTCTCTGCCTCCCTGAATGCCTAGATGATCCTTACTTTGAATGGCTAAACTGGCCT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CATGGTCTCTGCCTCCCTGAATGCCTAGATGATCCTTACTTTGAATGGCTAAACTGGCCT 1316
Query 1317 CAAGCTTTGGTTCCATTCTCTGACACTGAACTGGAGTATATATCCAATCTCGACCCTTTC 1376
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1317 CAAGCTTTGGTTCCATTCTCTGACACTGAACTGGATTATATATCCAATCTTGACCCTTTC 1376
Query 1377 AAAGACGCAGAACTTCTGAGAACTGAACTAAACTCTTTGCCGGAATCTGCCATAAGGGTC 1436
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1377 AAAGACGCAGAACTTCTGAGAACTGAACTACACTCTCTGCCGGAATCTGCCATAAGGGTC 1436
Query 1437 CTCGTTGTCTGCACAGTTTTCTTAAAACAAGCTGCAGCTGCAGGGCTCTGTCTCGCAGAG 1496
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1437 CTCGTCGTCTGCACAGTTTTCTTAAAACAAGCAGCAGCTGCAGGGCTCTGTCTCGCGGAG 1496
Query 1497 ATAGGCGAGAAGATGACTCGGGATTTCTCCAAGGGTGAAGAGAGTTTCAGTCT-TCTAGA 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1497 ATAGGCGAGAAGATGACTCGGGATTTCTCCAAGGGTGAAGAGAGTTTCAGTCTGT-TAGA 1555
Query 1556 GACTATCTGCACCAAAGCGAAAACAAGTGTCGTTGGCAAAACTGGCGAAGGCAGTGACTA 1615
||| ||||||||||||||||| |||||||| |||||||||| |||||| |||||||||
Sbjct 1556 GACCCTCTGCACCAAAGCGAAAGCAAGTGTCTTTGGCAAAACAAGCGAAGACAGTGACTA 1615
Query 1616 TACTCACGAAGGAAATGAAGTGAACACGGAGTTACACTGTGGAATGCTTAAGTTTGACGG 1675
|| ||| |||||||||||||||||||| |||||||| ||||||||| |||||||||||||
Sbjct 1616 TAGTCATGAAGGAAATGAAGTGAACACAGAGTTACAGTGTGGAATGTTTAAGTTTGACGG 1675
Query 1676 TGGAGATACCCCATGTGAAGCAGAGATTTCAGAGGTATTTCATGTATCTAAACCACCTTT 1735
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1676 TGGAGATACACCATGTGAAGCGGAGATTTCAGAGGTATTTCATGTATCTAAACCACCTTT 1735
Query 1736 GGTTCCAAGAGGACCACGTGCAAACACCATCCCCACCAATGTAACTGCT-CCGATGTTGT 1794
|||||||||||| |||||||||||||||||||| | | ||||||||||| || |||| ||
Sbjct 1736 GGTTCCAAGAGGGCCACGTGCAAACACCATCCCTAACGATGTAACTGCTTCC-ATGTCGT 1794
Query 1795 CATCACAAAACCAGCGGATTACTCATCATGAGAAAAATGCAAAAGAAAAGAAGAGAGGAG 1854
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1795 CATCACAAAACCAGCGGATTACTCATCAAGAGAAAAGTGCAAAAGAAAAGAAGAGAGGAG 1854
Query 1855 GCAAACAAGAAAGATGCACCATGAGGAGCAAGAGCCCACCAATTTGTGCAAACCATGATG 1914
|||| ||||||||||||||| ||||||||||||||||||| || || ||||||||||||
Sbjct 1855 GCAAGCAAGAAAGATGCACCGTGAGGAGCAAGAGCCCACCGATCAGTCCAAACCATGATG 1914
Query 1915 AATCAAAAGGTGtttttttCGTGGACATGACAACAGTTGAATGGGATATGTTCCTGCAGA 1974
|||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1915 AATCAAAAGGAGTTTCCTTCGTGGACATGACAACAGTTGAATGGGATACGTTCCTGCAGA 1974
Query 1975 GCTTCCAGACACTTTTGCAAGATGCACTGAGCAAAGGGTCAACGCCAAGATTAGGATGCT 2034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 GCTTCCAGACACTTTTGCAAGATGCACTGAGCAAAGGGTCAACGCCAAGATTAGGATGCT 2034
Query 2035 CCTGCGAAATTTGAGGAAATCAATTAATAGAAGACAGGCAAACGAC 2080
||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 2035 CCTGCGAAATTTGAGGAAATCGATTAATAGAAGACAGGAAAACGAC 2080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103111919430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5