BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483148
Length=2229
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40860.1 | Symbols: | protein kinase family protein / prote... 3524 0.0
> AT2G40860.1 | Symbols: | protein kinase family protein / protein
phosphatase 2C ( PP2C) family protein | chr2:17053568-17057182
REVERSE LENGTH=2230
Length=2230
Score = 3524 bits (1908), Expect = 0.0
Identities = 2130/2235 (95%), Gaps = 23/2235 (1%)
Strand=Plus/Plus
Query 1 TCGTCATCGTCATCACTCTCGACCGGTTCTCTGTTCGTCGTTTGTTTCTTCCGGTGGaaa 60
||||| |||||||||| ||||| |||||||||||||||||||||||| |||||||||| |
Sbjct 13 TCGTCGTCGTCATCACGCTCGATCGGTTCTCTGTTCGTCGTTTGTTT-TTCCGGTGGAGA 71
Query 61 aaaaTGGTGATGGAAATTGTGAAACCAAACACCTGCATTAGAGGATGTTGCACCAGTGAA 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 72 AAAATGGTGATGGAAATTGTGAAACCAAACACATGCATTAGAGGATGTTGCACCAGTGAA 131
Query 121 TCGATTCCTCTTCATCTCCCTTCTTCTTCGTTCACTCTTCTCTCCCCAATCGCTAAAGGA 180
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 132 TCGATCCCTCTTCATCTCCCTTCTTCTTCCTTCACTCTTCTCTCCCCAATCGCTAAAGGA 191
Query 181 TCAGAGAGTGTTGTTTACGAAGCGATTCTCGACGGACGAAGAGTAGCAGCCAAAAAGCCT 240
||||||||||||||||| |||||||||||||| || |||||||||||||| || ||||||
Sbjct 192 TCAGAGAGTGTTGTTTATGAAGCGATTCTCGATGGCCGAAGAGTAGCAGCGAAGAAGCCT 251
Query 241 ATCCTGTCTACTTCCGATGACCTCGACAAGTTCCACAGGAATTTGCAGCTCTTATGCAAT 300
||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 252 ATCTTGTCTACTTCCGATGACCTTGACAAGTTCCACAGGAATTTGCAGCTCTCATGCAAT 311
Query 301 CTCGATCATCCTGGTGTGGCTAAGTTACTAGCAGCACATGCGAAGCCTCCAAATTACATG 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 CTCAATCATCCTGGTGTGGCTAAGTTACTAGCAGCACATGCGAAGCCTCCAAATTACATG 371
Query 361 TTTTTCTTTGAGTTGTACGAGTCTGGGACCTTAGCTGAGAAGTTACACGTCGATGAGTGG 420
||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 372 TTTTTCTTTGACTTCTACGAGTCTGGGACTTTAGCTGAGAAGTTACACGTCGAGGAGTGG 431
Query 421 TCTCCGAGTATTGATCAAGTGTTAGTGATCACGCTTCACTTGGCAAAGGCATTGCAATAT 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 432 TCTCCGAGTATTGATCAAGTGTTACTGATCACGCTTCACTTGGCAAAGGCATTGCAATAT 491
Query 481 CTTCACAACAACGGGATTGTTCATAGGGATGTGAAACCAGAAAATGTTCTTCTTGACGAG 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 492 CTTCACAACAACGGGATTGTTCATAGGGATGTGAAACCAGCAAATGTTCTTCTTGACGAG 551
Query 541 AAGTTTTTCCCATATCTGGCCGACTTTGGTTTAGCTGAATACAAGAAGAATTTGCGCGAA 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 552 AAGTTTTTCCCATATCTGGCTGACTTTGGTTTAGCTGAATACAAGAAGAATTTGCGCGAA 611
Query 601 GTTAATCTGCAGAACTGGAGATCGTCTGGGAAGCCAACTGGTGGATTCCACAAAAAGAAT 660
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 GTTAATCTGCAGAATTGGAGATCGTCTGGGAAGCCAACTGGTGGATTCCACAAAAAGAAT 671
Query 661 ATGGTCGGAACACTTATTTACATGGCCCCTGAATTACTGAGGAAAGACATGTATACTGAG 720
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 672 ATGGTCGGAACACTTATTTACATGGCCCCTGAAATACTGAGGAAAGACATGTATACTGAG 731
Query 721 AAATCAGATATTTATAGCTTTGGGATTTTGATCAATGAGCTTTTAACTGGAGTTGTTCCA 780
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 AAAGCAGATATTTATAGCTTTGGGATTTTGATCAATGAGCTTTTAACTGGAGTTGTTCCA 791
Query 781 TATACTGATCTTCGTGCAGAAGCTCAGGCTCACACTGTTTTAGAGATGAATTACACAGAA 840
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 TATACTGATCGTCGTGCAGAAGCTCAGGCTCACACTGTTTTAGAGATGAATTACACAGAA 851
Query 841 CAGCAACTTACAGCTGCCATTGTGTCTTCTGGTCTGCGACCTGCTCTTGCTGAAACTGGA 900
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 852 CAGCAACTTACAGTTGCCATTGTGTCTTCTGGTCTGCGACCAGCTCTTGCTGAAATTGGA 911
Query 901 TTGCACCTTCCAAAGAATTTGCTATCTCTGATACAAAACTGCTGGGAAGCTGATCCTTCT 960
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 912 TTGCACCTTCCAAAGAGTTTGCTATCTCTGATACAAAACTGCTGGGAATCTGATCCGTCT 971
Query 961 AAACGACCTTCTTCGGACAATGTGGGTTTGGAACTAGAATCAATTTGGGAACAAGTGAGA 1020
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 972 AAACGACCTTCTTCGGACAATGTGGTTTTGGAACTAGAATCAATTTGGGAACAAGTGAGA 1031
Query 1021 GGAAAACAGCAAGGTCATCTCCTTGAGAAAACTTATAATTCCCAGAGTGATACAGATGGG 1080
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1032 GGAAAACAGCAAGGTCATCTCCTTGAGAAAACTTCTAATTCCCAGAGTGATACGGATGGG 1091
Query 1081 GCGGACATCATTAAAAATTCAGGAGAGTACAGGGACACCGTTAATTGGTCTAGTCAAGGG 1140
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1092 GCGGACATCATTAAAAATTCAGGAGATTACAGGGACACCGTTAATTGGTTTAGTCAAGGG 1151
Query 1141 GAGTGTTTATCCAAGAAATCGTCTGTTTCCACTGTCTTTGATGTGAAATTATGGTCTACT 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1152 GAGTGTTTATCCAAGAAATCGTCTGTTTCCACTGTCTTTGATGTGAAATTATGGTCTAGT 1211
Query 1201 TCAATAGATGATCCTTCAAGCTATGTCCCTGTAATTTCTTGTGGGTCTTTTGCAACATGT 1260
|||| |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1212 TCAACAGATGAACCTTCAAGATATGTCCCAGTAATTTCTTGTGGGTCTTTTGCAACATGT 1271
Query 1261 GGAAGAAGAGAATCCATGGAAGATACACACTTTC-TCATGCCTCACATGTGTAATGAGGA 1319
|||||||||||||||||||||||||||||||| | |||| || |||||||||||||||||
Sbjct 1272 GGAAGAAGAGAATCCATGGAAGATACACACTT-CATCATACCGCACATGTGTAATGAGGA 1330
Query 1320 AAGCATCCACTTATTTGCCATCTTCGATGGTCACAGAGGTATACCAACTGCTACAGCTGC 1379
||||||||||||||||||||||||||||||||| ||||| | |||| | |||||
Sbjct 1331 AAGCATCCACTTATTTGCCATCTTCGATGGTCATAGAGG----CG--CTGC-A--GCTGC 1381
Query 1380 TGAATTTTCTGCTCAAGTTTTGCCAGGACTAGTTCAAAGCTTATGTTCCACTAGCGCTGG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1382 TGAATTTTCTGCTCAAGTTTTGCCAGGACTAGTTCAAAGCTTATGTTCCACAAGCGCTGG 1441
Query 1440 TGAGGCATTATCACAAGCATTTGTTAGGACGGATTTAGCTTTCAGACAAGAACTTGATTC 1499
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1442 CGAGGCATTGTCACAAGCATTTGTTAGGACAGATTTAGCTTTCAGACAAGAACTGGATTC 1501
Query 1500 CCATCGTCAATCAAAAAGGGTGAGTCAGAAAGACTGCCATCCTGGTTGTACTGCTATAGC 1559
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1502 CCATCGTCAGTCAAAAAGGGTGAGTCAGAAAGACTGGCATCCTGGTTGTACTGCTATAGC 1561
Query 1560 CTCTCTCCTAGTAGAGAATAAGCTTTTCGTTGCAAATGTTGGTGACTCCAGGGCAATTTT 1619
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1562 CTCTCTCCTAGTAGAGAATAAGCTTTTCGTTGCGAATGTTGGTGACTCCAGGGCAATTTT 1621
Query 1620 ATGCCGCGCCGGCCACCCTTTTGCTCTAAGTAAGGCACATCTTGCAACCTGTATTGATGA 1679
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1622 ATGCCGCGCCGGTCACCCTTTTGCTCTAAGTAAGGCACATCTTGCAACTTGTATTGATGA 1681
Query 1680 GAGAAATCGTGTGGTTGGAGAAGGTGGGCGTATTGAATGGTTGGTTGACACATGGAGAGT 1739
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1682 AAGAAATCGTGTGATTGGAGAAGGTGGACGTATTGAATGGTTGGTTGACACATGGAGAGT 1741
Query 1740 TGCTCCTGCTGGCCTTCAGGTTACTCGGTCGATAGGAGATGATGACCTGAAGCCAGCTGT 1799
|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1742 TGCTCCTGCTGGACTTCAGGTTACTCGGTCAATAGGTGATGATGACCTGAAGCCAGCTGT 1801
Query 1800 AACAGCAGAACCAGAGATTAGTGAGACAATTCTATCAGCTGACGATGAGTTCTTGGTAAT 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 AACAGCAGAACCAGAGATTAGTGAGACAATTCTATCAGCTGACGATGAGTTCTTGGTAAT 1861
Query 1860 GGCAAGCGACGGGCTCTGGGATGTTGTGAACGATGAAGAAGTTATTGGTATAATCAGGGA 1919
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1862 GGCAAGCGACGGGCTCTGGGATGTTATGAACGATGAAGAAGTTATTGGTATAATCAGGGA 1921
Query 1920 TACTGTAAAAGAACCTTCAATGTGTTCAAAGAGATTAGCAACCGAGGCTGCAGCGCGTGG 1979
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 1922 TACTGTAAAAGAACCTTCAATGTGTTCAAAGAGATTAGCAACTGAAGCTGCAGCACGTGG 1981
Query 1980 TAGTGGTGATAACATCACAGTCATTGTAGTCTTCCTGCGGCCAGTGTCTACAGCTGAAAG 2039
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1982 TAGTGGTGACAACATCACAGTCATTGTAGTCTTCCTGCGGCCAGTGTCTACAGCCGAAAG 2041
Query 2040 GATCTACTAGTAG---CCAATTCTTGCACAGTACTATTCAACATGCAACTTCTTTACATA 2096
||||||||||||| |||||||||||||| || |||||||||| |||||||||||||||
Sbjct 2042 GATCTACTAGTAGTATCCAATTCTTGCACATTATTATTCAACATTCAACTTCTTTACATA 2101
Query 2097 TAAATTATTTTC-TCTGTATTA-CGAAAATGAAGCTTATATTATCGTCCCACAGTATTAT 2154
||||||| || | | ||| ||| | |||||||| ||||| ||||||||||||||||||||
Sbjct 2102 TAAATTAATT-CATGTGTGTTATC-AAAATGAACCTTATGTTATCGTCCCACAGTATTAT 2159
Query 2155 ATTTGGTCTCAACCAGAAAGTACCTAGAACATGTAAATTACAAGGAAACTTAGCTTGAGT 2214
||||| ||||||||||||||||| |||| |||||||| || | ||||||| |||||||
Sbjct 2160 ATTTGCTCTCAACCAGAAAGTACATAGACCATGTAAACTA---G-AAACTTAACTTGAGT 2215
Query 2215 GTATATACTCCTGAT 2229
|||||||||||||||
Sbjct 2216 GTATATACTCCTGAT 2230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110591800635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5