BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483154
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40920.1 | Symbols: | F-box and associated interaction doma... 1827 0.0
AT2G40925.1 | Symbols: | F-box and associated interaction doma... 773 0.0
AT2G40910.1 | Symbols: | F-box and associated interaction doma... 172 6e-42
> AT2G40920.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:17072464-17074164 REVERSE LENGTH=1585
Length=1585
Score = 1827 bits (989), Expect = 0.0
Identities = 1232/1345 (92%), Gaps = 33/1345 (2%)
Strand=Plus/Plus
Query 1 AAAGAGATGAAGAGAAGGAGGAGGGATCTGAAACAAGCGGCGGAGTCAGAGCAGGAGGAG 60
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 147 AAAGAGATGAAGAGAAGAAGGAAGGATCTGAAACAAGCGGCGGAGTCAGAGCAGGAGGAA 206
Query 61 TGTCAGAGAATTCCCCAGGTCGTCTCTCTCGGAGATTCCGATCAAATTCAGCCGTCACCC 120
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 207 TGTCAGAGCATTGCCCAGGTCGTCTCTCTCGGAGATTCCGATCAAATTCAGCCGCCACCC 266
Query 121 AACAAGAAAGAAGGAGAACATATATGTG---AGTTACTGCAGGA-TATG--CAGGATCTT 174
||||||||||||| |||| ||||||||| | ||||||||| | | || | |||| |
Sbjct 267 AACAAGAAAGAAGAAGAAGATATATGTGAATACTTACTGCAGAATTTTGATCTTGATCAT 326
Query 175 GTGTTGGAAATTCTAATGAGATTGCC---AACACAGTCCCTGATGAGGTTCAAGTGCGTC 231
||| |||||||||| |||||||| || ||| | ||||||| ||||||||||||||||
Sbjct 327 GTGATGGAAATTCTTATGAGATTTCCTTTAAC-C--TCCCTGACGAGGTTCAAGTGCGTC 383
Query 232 TCTAAGCACTGGTCATCCCTTATTTTTAGTCGATATTTTTGCAACCTTTTATTTACTACG 291
|||||||| ||||||||||| |||| |||||||||||||||||||||||||| |||||||
Sbjct 384 TCTAAGCAGTGGTCATCCCTCATTTCTAGTCGATATTTTTGCAACCTTTTATATACTACG 443
Query 292 GTCACACGACAACAACCACGCCTATACATGTGTTTAGTGGATGATGGCGGGCACCGTATA 351
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||
Sbjct 444 GTCACACGACAACAACCACGCCTATACATGTGTTTAAAGGATGACGGCGGGCACCGTGTA 503
Query 352 CTGCTATCTATATCATCACCGTCTCCAGACAACACTTGTTAT-GTCGTCGTCGACCAAGA 410
||||||||||||||||||||||||| || |||||||| || | || || ||||| |||||
Sbjct 504 CTGCTATCTATATCATCACCGTCTCGAGGCAACACTTCTT-TCGTGGTGGTCGAGCAAGA 562
Query 411 TTTGAGCATCCCAGGAATGGGAGGCTTCTTCTTGAACATTGTTCGTGGCTTGATGTGTTT 470
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 563 TTTGAGCATCCCAGGGATGGGAGGCTTCTTCTTGAACGTTGTTCGTGGCTTGATGTGTTT 622
Query 471 CTCCCGTAGTAAAAAGGCGTGTATCTATAACCCCAGCACCCAGGGCCGCACCAAACAACT 530
||| || || ||||||||| |||||||| | | | |||| |||||||||||||
Sbjct 623 CTCTCGCAGAAAAAAGGCGCGTATCTAT-A----A-C-CCCA-----GCACCAAACAACT 670
Query 531 CTTGACCTTACCTGCCATAAAATCCGACATCGTAGCTCAACAAGGTCAAAAGAAGCATCT 590
|||||||||||| |||||||| |||||||| ||||||||||||||||||| ||||||||
Sbjct 671 CTTGACCTTACCCGCCATAAAGTCCGACATTGTAGCTCAACAAGGTCAAACGAAGCATCA 730
Query 591 TACCCGGTATTACATCGGACACGACCCTGTTAGTGATCAATACAAACTAGTCTGCACGGT 650
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 TCCCCGGTATTACATCGGACACGACCCTGTTAGTGATCAATACAAACTAGTCTGCACGGT 790
Query 651 TGCGATATCCTCGCCATTGCCACGTTTGGCTAATCTGAAGTCAGAGCACTGGGTCTTCGC 710
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 791 TGCGATATCCTCGCTATTGCCACGTTTGGGTAATCTGAAGTCAGAGCACTGGGTCTTCGC 850
Query 711 ACTAGAAGCTGGAGGTTCATGGAAAAAGGTTGTTCCACTGGAAAATTATCGTCATCATGC 770
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 851 ACTAGAAGCTGGAGGTTCGTGGAAAAAGGTTGTTCCACTGGAAAATTATCGTCATCATGC 910
Query 771 CCCTTCCCCGCTAGGACGGTCTACCAGTGGATCAGTAGTACGTTATATGGCCTGGCCTGA 830
||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 911 CCCTTCCACGGAAGGACGGTCTACCAGTGGATCAGTAGTGCGTTATATGGCCTGGCCTGA 970
Query 831 TAATTATAATTGTGTGGTTGTGAGTTTCGACATTAGGTCTGAACAGATGACTATCATCCC 890
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 971 TAATTATAATTGTGTGGTTGTGAGTTTCGACATTAGGTCTGAACAGTTGACTATCATCCC 1030
Query 891 AGTACCTGGGGAGATCGCACCTC-ATGAGCATGTGCCTGCAGTTACGATGAGGGCGGATC 949
||||||| |||||||| ||||| | ||| |||||||||||||||||||| ||||||||
Sbjct 1031 AGTACCTAGGGAGATC-CACCTTGACGAGGTTGTGCCTGCAGTTACGATGATGGCGGATC 1089
Query 950 TTATAGAGTATGGTGGGAAGATAGCAATATTCTATCATACTTACCTTaaaaaaaaGGGTT 1009
|||||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||
Sbjct 1090 TTATAGAGTATGGTGGGAAGATAGCAATTTTCTATCATACAAACCTTAAAGACGAGGGTT 1149
Query 1010 CCGCGTCTTTATGGGTTTTGGAAGACATTGGGAAGAATGAATGGTCGAAAAAGACTCTGG 1069
||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1150 CCGCGGATTTATGGGTTTTGGAAGACACTGGGAAGAGTGAATGGTCGAAAAAGACTCTGG 1209
Query 1070 TTTTGCAGCCTTGTCAAAGGCATTTAGTCAAAGACATTGAATTGATCGTAAAAGGTACAA 1129
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1210 TTCTGCAGCCTTGTCAAAGGCATTTAGTCGAAGACATTGAATTGATCGTAAAAGGTACAA 1269
Query 1130 CGCAAGACGGCAAGGTAATCTTGGCACCGTTGGAGATGCATTCTCGATTCTACATTCTGT 1189
| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1270 CTCAAGACGGCAAGGTGATCTTGGCACCGGTGGAGATGCATTCTCGATTCTACATTCTGT 1329
Query 1190 ATTACGACTTGCAAAGCAATGACTTGAGAAAGGTTGAAATCAAAGGAGTACCACGCCT-T 1248
||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 1330 ATTACAACTTGCAAAGCAATGACTTGAGAAAGGTTGAAATCAAAGGAGTACCA-GACTCT 1388
Query 1249 TGGCCTACTCATAAAGAATGCTATTTTTACTTGAATTCTATGGATGAGAGTGAGAGCTTC 1308
||| | | |||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1389 TGGT-T--TGATAAAGAATGCTATTTCGACTTGAATTCTATGGATAAGAGTGAGAGCTTC 1445
Query 1309 ATCTACTTGGAAACTTGACCAAGAC 1333
|||||||||||||||||||||||||
Sbjct 1446 ATCTACTTGGAAACTTGACCAAGAC 1470
> AT2G40925.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:17074905-17076239 REVERSE LENGTH=1335
Length=1335
Score = 773 bits (418), Expect = 0.0
Identities = 946/1183 (80%), Gaps = 107/1183 (9%)
Strand=Plus/Plus
Query 181 GAAATTCTAATGAGATTGCCAACACAGTCCCTGATGAGGTTCAAGTGCGTCTCTAAGCAC 240
|||||||| || |||||||||||| ||||| | |||||||||||||||||||| |||||
Sbjct 223 GAAATTCTTATAAGATTGCCAACAAAGTCCTTTATGAGGTTCAAGTGCGTCTCAAAGCAG 282
Query 241 TGGTCATCCCTTATTTTTAGTCGATATTTTTGCAACCTTTTATTTAC-----T-AC-GGT 293
|||||| ||||||| | | |||||||||||||||||| ||||||||| | || |
Sbjct 283 TGGTCACCCCTTATCTCTGGTCGATATTTTTGCAACCGTTTATTTACTTGTGTAACACGA 342
Query 294 C-AC-ACGACAACAACCACGCCTATACATGTGTTTAGTGGATGATGGCGGGCACCGTATA 351
| || || |||||||||||| ||||||||||||||||||| | | | ||| ||
Sbjct 343 CAACAACAACAACAACCACGTCTATACATGTGTTTAGTGGCCAAAGACAAGCA----AT- 397
Query 352 CTGCTATCTA-TATCATCACCGTCTCCAGACAACACTTGTTATGT-CGTCGTCGACCAAG 409
|| | |||| |||||||| |||| || ||||||||||||| ||| | ||||||||||||
Sbjct 398 GTG-T-TCTACTATCATCAACGTCACCGGACAACACTTGTTTTGTAC-TCGTCGACCAAG 454
Query 410 ATTTGAGCATCCCAGGAATGGGAGGCTTCTTCTTGAACAT-TGTTCGTGGCTTGATGTGT 468
|||||||||||||||| | | ||||||| | | | ||||| ||||||| ||||
Sbjct 455 ATTTGAGCATCCCAGG-CT---A--CTTCTTC--G--CCTCTGTTCCTGGCTTGCTGTG- 503
Query 469 TTCTCCCG-TAGTAA-AAAGGCGTGTATCTATAACCCCAGCACCCAGGGCCGCACCAAAC 526
|| ||| | | | || |||||||||||||||| | | | || | |||||||||
Sbjct 504 TT-TCCAGTTCGGAACAAAGGCGTGTATCTAT-A----A-C-CCTA-----GCACCAAAC 550
Query 527 AACTCTTGACCTTA-CCTGCCATAAAATCCGACATCGTAGCTCAACAAGGTCAAAAGAAG 585
|||||||||||||| ||| || |||||||||||||| |||||||||||||||| ||||
Sbjct 551 AACTCTTGACCTTACCCT-CCGTAAAATCCGACATCACAGCTCAACAAGGTCAACTGAAG 609
Query 586 CATCTTACCCGGTATTACATCGGACACGACCCTGTTAGTGATCAATACAAACTAGTCTGC 645
| | ||||| || || || |||| ||| ||||||| ||||||||||||||||||||||
Sbjct 610 -A-C-TACCCAATACTATATTGGACGCGATCCTGTTAATGATCAATACAAACTAGTCTGC 666
Query 646 ACGGTTGC-GATATCCTCGCCATTGCCACGTTTGGCTAATC-TGAAG-TCAGAGCACTGG 702
|| || | ||||| |||| ||| |||| || || | || || |||||||| |||
Sbjct 667 ACTATT-CTGATATACTCGAAATT-----GTTT-GC-AAACATG-AGCTCAGAGCATTGG 717
Query 703 GTCTTCGCACTAGAAGC-TGGAGGTTCATGGAAAAAGGTTGTTCCACTGGAAAATTATCG 761
|||||| |||||||| | ||||||||| |||||||| ||||||||||||| ||||||||
Sbjct 718 GTCTTCACACTAGAA-CTTGGAGGTTCCTGGAAAAAAGTTGTTCCACTGGGAAATTATCA 776
Query 762 TCATCATGCCCCTTCC-CCGCTAGGACGGTCTA-CCAGTGGATCAGTAGTACGTTATATG 819
|| ||||| ||| || | || ||||||||||| | | ||| |||||||| |||| |
Sbjct 777 TCCCCATGCTCCTGCCACAGC-AGGACGGTCTATCGA-TGG---AGTAGTACATTATCTA 831
Query 820 GCCTGGCCTGATAAT-TATAATTGTGTGGTTGTGAGTTTCGACATTAGGTCTGAACAGAT 878
|||||| |||| | || || |||| ||||||||||||| |||||||||||||| || |
Sbjct 832 GCCTGGGTTGAT-TTGTACAAGTGTGCGGTTGTGAGTTTCAACATTAGGTCTGAAGAGGT 890
Query 879 GACTATCATCCCAGTACCTGGGGAGATCGCACCTCATGAGCATGTGCCTGCAGTTACGAT 938
|||| | ||| | ||||| || | || | ||| || |||||||||| | | |||
Sbjct 891 TACTACCTTCCTATTACCTCGGAAAAT--C-TGGGATGTGCCTGTGCCTGCACTGATGAT 947
Query 939 GAGGGCGGATCTTATAGAGTATGGTGGGAAGA-TAGCAATATTCTA-TCATA-CTTACCT 995
|| |||||||||||||||||||| | |||| | ||||||| ||| | ||||| | |||||
Sbjct 948 GAAGGCGGATCTTATAGAGTATGAT-GGAAAATTAGCAATTTTC-AGTCATAGC-TACCT 1004
Query 996 TaaaaaaaaGGGTTCCGCGT--CTTTATGGGTTTTGGAAGAC-AT--TGGGAAGAATG-A 1049
|||| | |||||| | || |||||||| ||| ||||| | ||||||||| | |
Sbjct 1005 TAAAGACGAGGGTT-TG-GTAGAATTATGGGTATTGAAAGACGCTGCTGGGAAGAA-GAA 1061
Query 1050 ATGGTCGAAAAAGACT-CTGGTTTTGCAGCCTTGTCAAAGGCATTTAGTCAAAGACATTG 1108
|||||| || | || | ||||||||||||||||| ||||||||||||||| | | |||||
Sbjct 1062 ATGGTCCAATATGA-TCCTGGTTTTGCAGCCTTGCCAAAGGCATTTAGTCCATGGCATTG 1120
Query 1109 AATTGATCGTAAAAGGTACAACGCAAGACGGCAAGGTAAT-CTTGGCACCGTTGGAGATG 1167
| |||||||||||||||||||| |||||||||||||| || | || |||| |||||||||
Sbjct 1121 ATTTGATCGTAAAAGGTACAACTCAAGACGGCAAGGTTATAC-TGTCACCCTTGGAGATG 1179
Query 1168 CATTCTCGA-TTCTACATTCTGTATTACGACT-TGCAAAGCAATGACTTGAGAAAGGTTG 1225
| ||||| | ||||||||||||| ||| || | |||||| |||||| |||||||||||||
Sbjct 1180 CGTTCTC-AGTTCTACATTCTGTGTTATGA-TGTGCAAAACAATGATTTGAGAAAGGTTG 1237
Query 1226 AAATCAAAGGAGTACCACGCCTTTGGCCTACT-CATAAAGAATGCTATTTTTACTTGAA- 1283
|||||| ||||||||||||||||||| | | |||||||||||| ||||| |||||||
Sbjct 1238 AAATCACAGGAGTACCACGCCTTTGG--T--TGCATAAAGAATGCAATTTTGACTTGAAG 1293
Query 1284 TTCTATGGATGAGAGTGAGAGCTTCATCTACTTGGAAACTTGA 1326
|| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1294 TT-TATGGATGAGAGTGAGAGCTTCATCTACTTGGAAATTTGA 1335
> AT2G40910.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:17069868-17071657 REVERSE LENGTH=1523
Length=1523
Score = 172 bits (93), Expect = 6e-42
Identities = 105/111 (95%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 1 AAAGAGATGAAGAGAAGGAGGAGGGATCTGAAACAAGCGGCGGAGTCAGAGCAGGAGGAG 60
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 98 AAAAAGATGAAGAGAAGGAGGAGGGATCTGAAACAAGCGGCGGAGTCAGAGCAGGAGGAA 157
Query 61 TGTCAGAGAATTCCCCAGGTCGTCTCTCTCGGAGATTCCGATCAAATTCAG 111
|||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 158 TGTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAG 208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67067928120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5