BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483156 Length=1209 Score E Sequences producing significant alignments: (Bits) Value AT2G40925.1 | Symbols: | F-box and associated interaction doma... 1275 0.0 AT2G40920.1 | Symbols: | F-box and associated interaction doma... 726 0.0 > AT2G40925.1 | Symbols: | F-box and associated interaction domains-containing protein | chr2:17074905-17076239 REVERSE LENGTH=1335 Length=1335 Score = 1275 bits (690), Expect = 0.0 Identities = 811/869 (93%), Gaps = 9/869 (1%) Strand=Plus/Plus Query 347 GCTACTTCTTGGACGCTGTTCCTGGCTTGATGTGTTTCCAATTCAGAACAAAGGCGTGTA 406 |||||||||| | | |||||||||||||| |||||||||| ||| ||||||||||||||| Sbjct 470 GCTACTTCTTCGCCTCTGTTCCTGGCTTGCTGTGTTTCCAGTTCGGAACAAAGGCGTGTA 529 Query 407 TCTATAACCCTAGCACCAAACAAATCTTGACCTTACCCTCCGTAAAATCCGACATCACAG 466 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 530 TCTATAACCCTAGCACCAAACAACTCTTGACCTTACCCTCCGTAAAATCCGACATCACAG 589 Query 467 CTCAACAAGGTCAACTGAAGAGTACCCAATACGT-TATTGGACGCGATCCTGTTAATGAT 525 ||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||| Sbjct 590 CTCAACAAGGTCAACTGAAGACTACCCAATAC-TATATTGGACGCGATCCTGTTAATGAT 648 Query 526 CAATACAAACTATTCTGCACTATTGAGATATCCTCGCAATGGTTTGCAAACATGAGGTCA 585 |||||||||||| ||||||||||| ||||| |||| ||| ||||||||||||||| ||| Sbjct 649 CAATACAAACTAGTCTGCACTATTCTGATATACTCGAAATTGTTTGCAAACATGAGCTCA 708 Query 586 GAGCATTGGGTCTTCACACTAGAAGC-TAGAGGTTCCTGGAAAAAGGTTGTTCCACTGGG 644 |||||||||||||||||||||||| | | |||||||||||||||| |||||||||||||| Sbjct 709 GAGCATTGGGTCTTCACACTAGAA-CTTGGAGGTTCCTGGAAAAAAGTTGTTCCACTGGG 767 Query 645 AGATTATCATCCCCATGCTCCTGCCACAGCAGGACGGTCTATCCATGGAGTAGTACATTA 704 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 768 AAATTATCATCCCCATGCTCCTGCCACAGCAGGACGGTCTATCGATGGAGTAGTACATTA 827 Query 705 TCTAGCCTGGGTTGATTTGTACAATTGTGCGGTTGTGAGTTTCGACATTATGTCTGAAGA 764 |||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||| Sbjct 828 TCTAGCCTGGGTTGATTTGTACAAGTGTGCGGTTGTGAGTTTCAACATTAGGTCTGAAGA 887 Query 765 GATTAATACCTTCCTATTACCTCAGAAAATCAGGGATGTGCCTGTGCCTGCACTGATGAT 824 | ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 888 GGTTACTACCTTCCTATTACCTCGGAAAATCTGGGATGTGCCTGTGCCTGCACTGATGAT 947 Query 825 GAAGGCGGATCTTATAGAGTATGATGGAAAATTAGCTATTTTCAATCATAGCTACCTTAA 884 |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 948 GAAGGCGGATCTTATAGAGTATGATGGAAAATTAGCAATTTTCAGTCATAGCTACCTTAA 1007 Query 885 AGACGAGGGTTCCGTGGATTTATGGGTCTTGAAAGACGCTG--GG-ATGAAGAAATGGTC 941 ||||||||||| || || |||||||| ||||||||||||| || | |||||||||||| Sbjct 1008 AGACGAGGGTTTGGTAGAATTATGGGTATTGAAAGACGCTGCTGGGAAGAAGAAATGGTC 1067 Query 942 CAATAAGAAGCTGGTTTTGCAGCCTTGCCAAAGGCATTTAGTCCATGACATTGATTTGAT 1001 ||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1068 CAATATGATCCTGGTTTTGCAGCCTTGCCAAAGGCATTTAGTCCATGGCATTGATTTGAT 1127 Query 1002 CGTAAAAGGTACAACTCAAGACGGCAAGGTTATGCTGGCACCGTTGGAGATGCGTTCTCA 1061 ||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| Sbjct 1128 CGTAAAAGGTACAACTCAAGACGGCAAGGTTATACTGTCACCCTTGGAGATGCGTTCTCA 1187 Query 1062 ATTCTACATTCTGT-TTCATGATGTGCAAAGCAATGATTTGAGAAAGGTTGAAATCAAAG 1120 ||||||||||||| || |||||||||||| |||||||||||||||||||||||||| || Sbjct 1188 GTTCTACATTCTGTGTT-ATGATGTGCAAAACAATGATTTGAGAAAGGTTGAAATCACAG 1246 Query 1121 GAGTGCCACGCCTTTGGTTCCATAAAGAATGCTATTTTGACTTGAAGTTTGTGGATGAGA 1180 |||| |||||||||||||| |||||||||||| ||||||||||||||||| ||||||||| Sbjct 1247 GAGTACCACGCCTTTGGTTGCATAAAGAATGCAATTTTGACTTGAAGTTTATGGATGAGA 1306 Query 1181 GTGAGAGCTTCATCTACGTGGAAATTTGA 1209 ||||||||||||||||| ||||||||||| Sbjct 1307 GTGAGAGCTTCATCTACTTGGAAATTTGA 1335 Score = 268 bits (145), Expect = 7e-71 Identities = 274/330 (83%), Gaps = 33/330 (10%) Strand=Plus/Plus Query 21 TATgaagaagaagggaagaagaagaggaagTC----ATATGTGCAAGAAGCACGACTGTG 76 |||||||| |||| ||||||||||||||| || |||||||||| | ||||||||| | Sbjct 141 TATGAAGAGGAAGAGAAGAAGAAGAGGAA-TCAAAGATATGTGCAATAGGCACGACTGCG 199 Query 77 AGATTCCTCCGGATCTCGTGACAGAAATTCTTATAAGATTGCCAAAAAAGTCCCTAATGA 136 |||| ||||| |||||| ||| ||||||||||||||||||||| || | || | Sbjct 200 AGATCCCTCCTGATCTCATGATAGAAATTCTTATAAGATTGCC----AA----C-AA--A 248 Query 137 GGTTCAACAACCTCCCTCATGAGGTTCAAGTGCGTCTCAAAGCAGTGGTCATCCCTCATC 196 | | ||| | ||||||||||||||||||||||||||||||||| |||| ||| Sbjct 249 -G-T------CCT---TTATGAGGTTCAAGTGCGTCTCAAAGCAGTGGTCACCCCTTATC 297 Query 197 TCTTGTCGATATTTTTGCAACCGTTTATTTACTACCGTCACACTCACACGacaacaacaa 256 ||| ||||||||||||||||||||||||||||| || | || || ||||||||||| Sbjct 298 TCTGGTCGATATTTTTGCAACCGTTTATTTACTTGTGT-A-AC--AC--GACAACAACAA 351 Query 257 caacaacCACGTCTATACATGTGTTTAGTGACGAAAGACAACCAAGGTCTACTACTATCA 316 |||||||||||||||||||||||||||||| | |||||||| ||| || | ||||||||| Sbjct 352 CAACAACCACGTCTATACATGTGTTTAGTGGCCAAAGACAAGCAATGTGTTCTACTATCA 411 Query 317 TCAACGTCACCGGACAACACTTCTTTTGTA 346 |||||||||||||||||||||| ||||||| Sbjct 412 TCAACGTCACCGGACAACACTTGTTTTGTA 441 > AT2G40920.1 | Symbols: | F-box and associated interaction domains-containing protein | chr2:17072464-17074164 REVERSE LENGTH=1585 Length=1585 Score = 726 bits (393), Expect = 0.0 Identities = 737/896 (82%), Gaps = 51/896 (6%) Strand=Plus/Plus Query 347 GCTACTTCTTGGACGCTGTTCCTGGCTTGATGTGTTTCCAAT-TCAGAACAAAGGCGTGT 405 ||| ||||||| ||| ||||| ||||||||||||||| | | ||||| ||||||| || Sbjct 586 GCTTCTTCTTGAACGTTGTTCGTGGCTTGATGTGTTT-CTCTCGCAGAAAAAAGGCGCGT 644 Query 406 ATCTATAACCCTAGCACCAAACAAATCTTGACCTTACCCTCCGTAAAATCCGACATCACA 465 ||||||||||| |||||||||||| |||||||||||||| || |||| |||||||| | Sbjct 645 ATCTATAACCCCAGCACCAAACAACTCTTGACCTTACCCGCCATAAAGTCCGACATTGTA 704 Query 466 GCTCAACAAGGTC-AACTGAAG-AGT-A--CCCAATACGTT--ATTGGACGCGATCCTGT 518 ||||||||||||| ||| |||| | | | ||| || || || |||| ||| ||||| Sbjct 705 GCTCAACAAGGTCAAAC-GAAGCA-TCATCCCCGGTA--TTACATCGGACACGACCCTGT 760 Query 519 TAATGATCAATACAAACTATTCTGCACTATTGAGATATCCTCGC-AATG----GTTT--G 571 || |||||||||||||||| ||||||| ||| ||||||||||| | || |||| | Sbjct 761 TAGTGATCAATACAAACTAGTCTGCACGGTTGCGATATCCTCGCTATTGCCACGTTTGGG 820 Query 572 CAAACATGAGGTCAGAGCATTGGGTCTTCACACTAGAAGCTAGAGGTTCCTGGAAAAAGG 631 || | ||| ||||||||| ||||||||| ||||||||||| ||||||| |||||||||| Sbjct 821 TAATC-TGAAGTCAGAGCACTGGGTCTTCGCACTAGAAGCTGGAGGTTCGTGGAAAAAGG 879 Query 632 TTGTTCCACTGGGAGATTATCATCCCCATGCTCCTGCCACAGCAGGACGGTCTATCCA-T 690 |||||||||||| | |||||| || ||||| ||| |||| | ||||||||||| ||| | Sbjct 880 TTGTTCCACTGGAAAATTATCGTCATCATGCCCCTTCCACGGAAGGACGGTCTA-CCAGT 938 Query 691 GG---AGTAGTACATTATCTAGCCTGGGTTGAT-TTGTACAATTGTGCGGTTGTGAGTTT 746 || |||||| | |||| | |||||| |||| | || ||||||| |||||||||||| Sbjct 939 GGATCAGTAGTGCGTTATATGGCCTGGCCTGATAAT-TATAATTGTGTGGTTGTGAGTTT 997 Query 747 CGACATTATGTCTGAAGAGATT-AATACCTTCCTATTACCTCA-GAAAAT-CA--GGGAT 801 |||||||| ||||||| || || | || | ||| | ||||| | | | || || || Sbjct 998 CGACATTAGGTCTGAACAG-TTGACTATCATCCCAGTACCT-AGGGAGATCCACCTTGAC 1055 Query 802 GTGCCTGTGCCTGCACTGATGATGAAGGCGGATCTTATAGAGTATGAT-GGAAAATTAGC 860 | | |||||||||| | | ||||| |||||||||||||||||||| | |||| | |||| Sbjct 1056 GAGGTTGTGCCTGCAGTTACGATGATGGCGGATCTTATAGAGTATGGTGGGAAGA-TAGC 1114 Query 861 TATTTTCAATCATAGC-TACCTTAAAGACGAGGGTTCCGTGGATTTATGGGTCTTGAAAG 919 |||||| |||||| | ||||||||||||||||||||| |||||||||||| ||| ||| Sbjct 1115 AATTTTCTATCATA-CAAACCTTAAAGACGAGGGTTCCGCGGATTTATGGGTTTTGGAAG 1173 Query 920 ACGCTGGGATGAAG-AAATGGTCCAATAAGAAGCTGGTTTTGCAGCCTTGCCAAAGGCAT 978 || |||||| | || ||||||| || |||| |||||| |||||||||| ||||||||| Sbjct 1174 ACACTGGGAAG-AGTGAATGGTCGAAAAAGACTCTGGTTCTGCAGCCTTGTCAAAGGCAT 1232 Query 979 TTAGTCCATGACATTGATTTGATCGTAAAAGGTACAACTCAAGACGGCAAGGTTATGC-T 1037 |||||| | |||||||| ||||||||||||||||||||||||||||||||||| || | | Sbjct 1233 TTAGTCGAAGACATTGAATTGATCGTAAAAGGTACAACTCAAGACGGCAAGGTGAT-CTT 1291 Query 1038 GGCACCGTTGGAGATGCGTTCTCAATTCTACATTCTGT-TTCATGA-TGTGCAAAGCAAT 1095 ||||||| ||||||||| ||||| |||||||||||||| || | | | ||||||||||| Sbjct 1292 GGCACCGGTGGAGATGCATTCTCGATTCTACATTCTGTATT-ACAACT-TGCAAAGCAAT 1349 Query 1096 GATTTGAGAAAGGTTGAAATCAAAGGAGTGCCACGCCT-TTGGTTCCATAAAGAATGCTA 1154 || |||||||||||||||||||||||||| ||| | || |||||| ||||||||||||| Sbjct 1350 GACTTGAGAAAGGTTGAAATCAAAGGAGTACCA-GACTCTTGGTTTGATAAAGAATGCTA 1408 Query 1155 TTTTGACTTGAAGTT-TGTGGATGAGAGTGAGAGCTTCATCTACGTGGAAATTTGA 1209 ||| |||||||| || | ||||| |||||||||||||||||||| |||||| |||| Sbjct 1409 TTTCGACTTGAA-TTCTATGGATAAGAGTGAGAGCTTCATCTACTTGGAAACTTGA 1463 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59387244735 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5