BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483156
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40925.1 | Symbols: | F-box and associated interaction doma... 1275 0.0
AT2G40920.1 | Symbols: | F-box and associated interaction doma... 726 0.0
> AT2G40925.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:17074905-17076239 REVERSE LENGTH=1335
Length=1335
Score = 1275 bits (690), Expect = 0.0
Identities = 811/869 (93%), Gaps = 9/869 (1%)
Strand=Plus/Plus
Query 347 GCTACTTCTTGGACGCTGTTCCTGGCTTGATGTGTTTCCAATTCAGAACAAAGGCGTGTA 406
|||||||||| | | |||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct 470 GCTACTTCTTCGCCTCTGTTCCTGGCTTGCTGTGTTTCCAGTTCGGAACAAAGGCGTGTA 529
Query 407 TCTATAACCCTAGCACCAAACAAATCTTGACCTTACCCTCCGTAAAATCCGACATCACAG 466
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 530 TCTATAACCCTAGCACCAAACAACTCTTGACCTTACCCTCCGTAAAATCCGACATCACAG 589
Query 467 CTCAACAAGGTCAACTGAAGAGTACCCAATACGT-TATTGGACGCGATCCTGTTAATGAT 525
||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct 590 CTCAACAAGGTCAACTGAAGACTACCCAATAC-TATATTGGACGCGATCCTGTTAATGAT 648
Query 526 CAATACAAACTATTCTGCACTATTGAGATATCCTCGCAATGGTTTGCAAACATGAGGTCA 585
|||||||||||| ||||||||||| ||||| |||| ||| ||||||||||||||| |||
Sbjct 649 CAATACAAACTAGTCTGCACTATTCTGATATACTCGAAATTGTTTGCAAACATGAGCTCA 708
Query 586 GAGCATTGGGTCTTCACACTAGAAGC-TAGAGGTTCCTGGAAAAAGGTTGTTCCACTGGG 644
|||||||||||||||||||||||| | | |||||||||||||||| ||||||||||||||
Sbjct 709 GAGCATTGGGTCTTCACACTAGAA-CTTGGAGGTTCCTGGAAAAAAGTTGTTCCACTGGG 767
Query 645 AGATTATCATCCCCATGCTCCTGCCACAGCAGGACGGTCTATCCATGGAGTAGTACATTA 704
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 768 AAATTATCATCCCCATGCTCCTGCCACAGCAGGACGGTCTATCGATGGAGTAGTACATTA 827
Query 705 TCTAGCCTGGGTTGATTTGTACAATTGTGCGGTTGTGAGTTTCGACATTATGTCTGAAGA 764
|||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||
Sbjct 828 TCTAGCCTGGGTTGATTTGTACAAGTGTGCGGTTGTGAGTTTCAACATTAGGTCTGAAGA 887
Query 765 GATTAATACCTTCCTATTACCTCAGAAAATCAGGGATGTGCCTGTGCCTGCACTGATGAT 824
| ||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 888 GGTTACTACCTTCCTATTACCTCGGAAAATCTGGGATGTGCCTGTGCCTGCACTGATGAT 947
Query 825 GAAGGCGGATCTTATAGAGTATGATGGAAAATTAGCTATTTTCAATCATAGCTACCTTAA 884
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 948 GAAGGCGGATCTTATAGAGTATGATGGAAAATTAGCAATTTTCAGTCATAGCTACCTTAA 1007
Query 885 AGACGAGGGTTCCGTGGATTTATGGGTCTTGAAAGACGCTG--GG-ATGAAGAAATGGTC 941
||||||||||| || || |||||||| ||||||||||||| || | ||||||||||||
Sbjct 1008 AGACGAGGGTTTGGTAGAATTATGGGTATTGAAAGACGCTGCTGGGAAGAAGAAATGGTC 1067
Query 942 CAATAAGAAGCTGGTTTTGCAGCCTTGCCAAAGGCATTTAGTCCATGACATTGATTTGAT 1001
||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1068 CAATATGATCCTGGTTTTGCAGCCTTGCCAAAGGCATTTAGTCCATGGCATTGATTTGAT 1127
Query 1002 CGTAAAAGGTACAACTCAAGACGGCAAGGTTATGCTGGCACCGTTGGAGATGCGTTCTCA 1061
||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct 1128 CGTAAAAGGTACAACTCAAGACGGCAAGGTTATACTGTCACCCTTGGAGATGCGTTCTCA 1187
Query 1062 ATTCTACATTCTGT-TTCATGATGTGCAAAGCAATGATTTGAGAAAGGTTGAAATCAAAG 1120
||||||||||||| || |||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1188 GTTCTACATTCTGTGTT-ATGATGTGCAAAACAATGATTTGAGAAAGGTTGAAATCACAG 1246
Query 1121 GAGTGCCACGCCTTTGGTTCCATAAAGAATGCTATTTTGACTTGAAGTTTGTGGATGAGA 1180
|||| |||||||||||||| |||||||||||| ||||||||||||||||| |||||||||
Sbjct 1247 GAGTACCACGCCTTTGGTTGCATAAAGAATGCAATTTTGACTTGAAGTTTATGGATGAGA 1306
Query 1181 GTGAGAGCTTCATCTACGTGGAAATTTGA 1209
||||||||||||||||| |||||||||||
Sbjct 1307 GTGAGAGCTTCATCTACTTGGAAATTTGA 1335
Score = 268 bits (145), Expect = 7e-71
Identities = 274/330 (83%), Gaps = 33/330 (10%)
Strand=Plus/Plus
Query 21 TATgaagaagaagggaagaagaagaggaagTC----ATATGTGCAAGAAGCACGACTGTG 76
|||||||| |||| ||||||||||||||| || |||||||||| | ||||||||| |
Sbjct 141 TATGAAGAGGAAGAGAAGAAGAAGAGGAA-TCAAAGATATGTGCAATAGGCACGACTGCG 199
Query 77 AGATTCCTCCGGATCTCGTGACAGAAATTCTTATAAGATTGCCAAAAAAGTCCCTAATGA 136
|||| ||||| |||||| ||| ||||||||||||||||||||| || | || |
Sbjct 200 AGATCCCTCCTGATCTCATGATAGAAATTCTTATAAGATTGCC----AA----C-AA--A 248
Query 137 GGTTCAACAACCTCCCTCATGAGGTTCAAGTGCGTCTCAAAGCAGTGGTCATCCCTCATC 196
| | ||| | ||||||||||||||||||||||||||||||||| |||| |||
Sbjct 249 -G-T------CCT---TTATGAGGTTCAAGTGCGTCTCAAAGCAGTGGTCACCCCTTATC 297
Query 197 TCTTGTCGATATTTTTGCAACCGTTTATTTACTACCGTCACACTCACACGacaacaacaa 256
||| ||||||||||||||||||||||||||||| || | || || |||||||||||
Sbjct 298 TCTGGTCGATATTTTTGCAACCGTTTATTTACTTGTGT-A-AC--AC--GACAACAACAA 351
Query 257 caacaacCACGTCTATACATGTGTTTAGTGACGAAAGACAACCAAGGTCTACTACTATCA 316
|||||||||||||||||||||||||||||| | |||||||| ||| || | |||||||||
Sbjct 352 CAACAACCACGTCTATACATGTGTTTAGTGGCCAAAGACAAGCAATGTGTTCTACTATCA 411
Query 317 TCAACGTCACCGGACAACACTTCTTTTGTA 346
|||||||||||||||||||||| |||||||
Sbjct 412 TCAACGTCACCGGACAACACTTGTTTTGTA 441
> AT2G40920.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:17072464-17074164 REVERSE LENGTH=1585
Length=1585
Score = 726 bits (393), Expect = 0.0
Identities = 737/896 (82%), Gaps = 51/896 (6%)
Strand=Plus/Plus
Query 347 GCTACTTCTTGGACGCTGTTCCTGGCTTGATGTGTTTCCAAT-TCAGAACAAAGGCGTGT 405
||| ||||||| ||| ||||| ||||||||||||||| | | ||||| ||||||| ||
Sbjct 586 GCTTCTTCTTGAACGTTGTTCGTGGCTTGATGTGTTT-CTCTCGCAGAAAAAAGGCGCGT 644
Query 406 ATCTATAACCCTAGCACCAAACAAATCTTGACCTTACCCTCCGTAAAATCCGACATCACA 465
||||||||||| |||||||||||| |||||||||||||| || |||| |||||||| |
Sbjct 645 ATCTATAACCCCAGCACCAAACAACTCTTGACCTTACCCGCCATAAAGTCCGACATTGTA 704
Query 466 GCTCAACAAGGTC-AACTGAAG-AGT-A--CCCAATACGTT--ATTGGACGCGATCCTGT 518
||||||||||||| ||| |||| | | | ||| || || || |||| ||| |||||
Sbjct 705 GCTCAACAAGGTCAAAC-GAAGCA-TCATCCCCGGTA--TTACATCGGACACGACCCTGT 760
Query 519 TAATGATCAATACAAACTATTCTGCACTATTGAGATATCCTCGC-AATG----GTTT--G 571
|| |||||||||||||||| ||||||| ||| ||||||||||| | || |||| |
Sbjct 761 TAGTGATCAATACAAACTAGTCTGCACGGTTGCGATATCCTCGCTATTGCCACGTTTGGG 820
Query 572 CAAACATGAGGTCAGAGCATTGGGTCTTCACACTAGAAGCTAGAGGTTCCTGGAAAAAGG 631
|| | ||| ||||||||| ||||||||| ||||||||||| ||||||| ||||||||||
Sbjct 821 TAATC-TGAAGTCAGAGCACTGGGTCTTCGCACTAGAAGCTGGAGGTTCGTGGAAAAAGG 879
Query 632 TTGTTCCACTGGGAGATTATCATCCCCATGCTCCTGCCACAGCAGGACGGTCTATCCA-T 690
|||||||||||| | |||||| || ||||| ||| |||| | ||||||||||| ||| |
Sbjct 880 TTGTTCCACTGGAAAATTATCGTCATCATGCCCCTTCCACGGAAGGACGGTCTA-CCAGT 938
Query 691 GG---AGTAGTACATTATCTAGCCTGGGTTGAT-TTGTACAATTGTGCGGTTGTGAGTTT 746
|| |||||| | |||| | |||||| |||| | || ||||||| ||||||||||||
Sbjct 939 GGATCAGTAGTGCGTTATATGGCCTGGCCTGATAAT-TATAATTGTGTGGTTGTGAGTTT 997
Query 747 CGACATTATGTCTGAAGAGATT-AATACCTTCCTATTACCTCA-GAAAAT-CA--GGGAT 801
|||||||| ||||||| || || | || | ||| | ||||| | | | || || ||
Sbjct 998 CGACATTAGGTCTGAACAG-TTGACTATCATCCCAGTACCT-AGGGAGATCCACCTTGAC 1055
Query 802 GTGCCTGTGCCTGCACTGATGATGAAGGCGGATCTTATAGAGTATGAT-GGAAAATTAGC 860
| | |||||||||| | | ||||| |||||||||||||||||||| | |||| | ||||
Sbjct 1056 GAGGTTGTGCCTGCAGTTACGATGATGGCGGATCTTATAGAGTATGGTGGGAAGA-TAGC 1114
Query 861 TATTTTCAATCATAGC-TACCTTAAAGACGAGGGTTCCGTGGATTTATGGGTCTTGAAAG 919
|||||| |||||| | ||||||||||||||||||||| |||||||||||| ||| |||
Sbjct 1115 AATTTTCTATCATA-CAAACCTTAAAGACGAGGGTTCCGCGGATTTATGGGTTTTGGAAG 1173
Query 920 ACGCTGGGATGAAG-AAATGGTCCAATAAGAAGCTGGTTTTGCAGCCTTGCCAAAGGCAT 978
|| |||||| | || ||||||| || |||| |||||| |||||||||| |||||||||
Sbjct 1174 ACACTGGGAAG-AGTGAATGGTCGAAAAAGACTCTGGTTCTGCAGCCTTGTCAAAGGCAT 1232
Query 979 TTAGTCCATGACATTGATTTGATCGTAAAAGGTACAACTCAAGACGGCAAGGTTATGC-T 1037
|||||| | |||||||| ||||||||||||||||||||||||||||||||||| || | |
Sbjct 1233 TTAGTCGAAGACATTGAATTGATCGTAAAAGGTACAACTCAAGACGGCAAGGTGAT-CTT 1291
Query 1038 GGCACCGTTGGAGATGCGTTCTCAATTCTACATTCTGT-TTCATGA-TGTGCAAAGCAAT 1095
||||||| ||||||||| ||||| |||||||||||||| || | | | |||||||||||
Sbjct 1292 GGCACCGGTGGAGATGCATTCTCGATTCTACATTCTGTATT-ACAACT-TGCAAAGCAAT 1349
Query 1096 GATTTGAGAAAGGTTGAAATCAAAGGAGTGCCACGCCT-TTGGTTCCATAAAGAATGCTA 1154
|| |||||||||||||||||||||||||| ||| | || |||||| |||||||||||||
Sbjct 1350 GACTTGAGAAAGGTTGAAATCAAAGGAGTACCA-GACTCTTGGTTTGATAAAGAATGCTA 1408
Query 1155 TTTTGACTTGAAGTT-TGTGGATGAGAGTGAGAGCTTCATCTACGTGGAAATTTGA 1209
||| |||||||| || | ||||| |||||||||||||||||||| |||||| ||||
Sbjct 1409 TTTCGACTTGAA-TTCTATGGATAAGAGTGAGAGCTTCATCTACTTGGAAACTTGA 1463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59387244735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5