BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483158
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40935.1 | Symbols: | PLAC8 family protein | chr2:17082975-... 1171 0.0
> AT2G40935.1 | Symbols: | PLAC8 family protein | chr2:17082975-17084347
FORWARD LENGTH=801
Length=801
Score = 1171 bits (634), Expect = 0.0
Identities = 711/748 (95%), Gaps = 5/748 (1%)
Strand=Plus/Plus
Query 1 TTTTGTCTCTGCTTCTTGCTCTAATCTCTGAGGTAAATAAAGTCTTTTTCTTGAAATTGG 60
|||||||||||||||||||||| ||||| ||||||||||||| | ||||||| |||||
Sbjct 21 TTTTGTCTCTGCTTCTTGCTCT--GCTCTGTGGTAAATAAAGTCCTGTTCTTGATATTGG 78
Query 61 TGGATTCAACAGAATTAGGATGCAAGAGAACAAGGGTCATTACGTGCCACCATCTTATAT 120
||| |||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 79 TGGTTTCATCAGAATTAGGATGAAAGAGAAGAAGGGTCATTACGTGCCACCATCTTATAT 138
Query 121 TCCATTAACACAGTCAGATGCTGATACTGAAGTTGAGACCACTACTCCAAACCTGGAGAT 180
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 139 TCCATTAACACAGTCAGATGCTGATACTGAAGTAGAGACCACTACTCCAAATCTGGAAAT 198
Query 181 TGCTGCTTCTGAAAGCACAAAAGACGATCCGAGACCGTGGTCATCTGGTATATGCGCGTG 240
||||| |||||||||||||||||| |||||||||| |||||||||||||||||||| ||
Sbjct 199 TGCTGTTTCTGAAAGCACAAAAGATGATCCGAGACAATGGTCATCTGGTATATGCGCTTG 258
Query 241 CTTCGACGATATACAGAGCTGTT-TAGTAGGTTTGTTCTGTCCATGTTATATCTTTGGCA 299
|||||||||||| |||||||||| | ||||||||||||||||| ||||||||||||||||
Sbjct 259 CTTCGACGATATGCAGAGCTGTTGT-GTAGGTTTGTTCTGTCCTTGTTATATCTTTGGCA 317
Query 300 AAAACGCAGAGCTTCTGGGGTCTGGAACATTTGCAGGACCTTGCTTAACCCATTGCATTT 359
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 318 AAAACGCAGAGCTTCTGGGGTCTGGAACATTTGCAGGACCCTGCTTAACCCATTGCATCT 377
Query 360 CATGGGCTTTGGTCAACACCATTTGCTGCTTTGCAACTAATGGCGCATTGCTCGGTCTAC 419
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 CCTGGGCTTTGGTCAATACCATTTGCTGCTTTGCAACTAATGGCGCATTGCTCGGTCTAC 437
Query 420 CGGGATGCTTTGTGTCATGTTATGCTTGCGGATACCGCAAATCATTAAGAGCCAAGTACA 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 438 CGGGATGCTTTGTGTCATGTTATGCTTGCGGGTACCGCAAATCATTAAGAGCCAAGTACA 497
Query 480 ATTTACAGGAGGCTCCATGTGGGGATTTTGTAACACACTTCTTCTGTCACTTGTGTGCCA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 ATTTACAGGAGGCTCCATGTGGGGATTTTGTAACACACTTCTTCTGTCACTTGTGTGCCA 557
Query 540 TTTGCCAAGAATACAGAGAGATTCGAGAACATAGCAGCGGCTCATATCCTCCTGACATGA 599
||||||||||||||||||||||||||||||| ||||| || |||||||||| ||||||||
Sbjct 558 TTTGCCAAGAATACAGAGAGATTCGAGAACAAAGCAGTGGTTCATATCCTCTTGACATGA 617
Query 600 AGATGGCTATCACCAATGCCCCCTCGGCTCAAACCATGGAATCAGCTAACTGATCActtt 659
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 618 AGATGGCTATCACCAATGCCCCCTTGGCTCAAACCATGGAATCAGCTAACTGATCACTTT 677
Query 660 tgtctcattgagttttcttgtttattttgtagatgacatttttcttttcatcgacttttg 719
||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 678 -GTCTCATTGAGCTTCCTTGTTTATTTTGTAGAAGACATTTTTCTTTTCATCGACTTTTG 736
Query 720 CAATGTATTTGAGAAGTTTGATGAGTAA 747
||||||||||||||||||||||||||||
Sbjct 737 CAATGTATTTGAGAAGTTTGATGAGTAA 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36319288281
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5