BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483163
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40960.1 | Symbols: | Single-stranded nucleic acid binding ... 1557 0.0
AT5G05100.1 | Symbols: | Single-stranded nucleic acid binding ... 163 3e-39
> AT2G40960.1 | Symbols: | Single-stranded nucleic acid binding
R3H protein | chr2:17095522-17097454 FORWARD LENGTH=1257
Length=1257
Score = 1557 bits (843), Expect = 0.0
Identities = 1035/1127 (92%), Gaps = 16/1127 (1%)
Strand=Plus/Plus
Query 81 CTCATGGACACAGCCTTGACCTCAGAAACAGGTTGTCCCGTTATGGCCGATAAGGGATTC 140
|||||||||||||| |||||||||||| |||| ||| ||||||| |||||||||||||||
Sbjct 113 CTCATGGACACAGCATTGACCTCAGAATCAGGCTGTGCCGTTATAGCCGATAAGGGATTC 172
Query 141 ACGGTGGATCCTTTTTTGGTCGAGGCTCTTCAAAACCCTCGACATCGTCCAACGATTTTG 200
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 173 AATGTGGATCCTTTTTTGGTCGAGGCTCTTCAAAACCCTCGACATCGTCTAACGATTTTG 232
Query 201 CGGATGGAACTTGATATTCAGAGGTTCTTCCAGAGCCCTGATCAGCAGCTATTCGAGTTC 260
||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 233 CGGATGGAACTTGATGTTCAGAGGTTCTTGCAGAGCCCTGATCAGCAGCAATTCGAGTTC 292
Query 261 CAGCATTTCCCTACATCATACCTCCGTCTTGCGGCCCATCGTGTTGCTAATCATTATGGA 320
||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 293 CAGCATTTCCCTACATCATACCTCCGTTTTGCGGCTCATCGTGTTGCTAATCACTATGGA 352
Query 321 CTAATTACATCAGTTCGAGATGGTGGTGCAGATGGTAACGGGAGCAGAATTTTCGTGACT 380
|||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||
Sbjct 353 CTAATTACATCAGTTCGAGATGGTGGTGCAGATGGTAATGAGAGCAGAATTGTCGTGACT 412
Query 381 AAATCTACTGAGAGCAGTTTTCCCGCTGTTCGGCTATCTGAAATCCCTGCT-AAACAATC 439
||||||| ||| ||||| ||||| |||| ||| |||||||||||||||| | ||||| ||
Sbjct 413 AAATCTAGTGATAGCAGATTTCCTGCTGCTCGACTATCTGAAATCCCTG-TGAAACAGTC 471
Query 440 AGAGATTGGCAAGTTCGAGCACATGAAAGTTGCTATAAATCCCAGACCTTCTAAAGGATC 499
||| | ||||||||| ||||| |||||||||| |||||| || |||||| ||||||||||
Sbjct 472 AGAAACTGGCAAGTTTGAGCATATGAAAGTTGTTATAAAGCCAAGACCTACTAAAGGATC 531
Query 500 TGGTATGGAAGCTGATGAACTGGAAAAGAAAGGTGGTCTTCTGAAAAGTGTTGAAGAGAG 559
||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 532 TGGAATGGAAGGTGATGAACT------GAAAGGTGGTCTTCTGAAAAGTGTTGAAGAGAG 585
Query 560 GAAAGAAGATTACGACAGGGCTCGAGCTCGCATATTTAACGGTCTTGCGGACCTTGATTG 619
||||||||||||||||||||||||||| ||||||||||||||||||| | || |||||||
Sbjct 586 GAAAGAAGATTACGACAGGGCTCGAGCACGCATATTTAACGGTCTTGTGAACATTGATTG 645
Query 620 TAATGATTCTTCATCTGAAACTAATCCTTGGAGGGTGAAATGTAGTCCTAGCAGAGATGA 679
||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 646 TAACGATTCTTCATCTGAAACTAATCCTTGGAGGGTGAATTGTAGTTCTAGCAGAGATGA 705
Query 680 AAATCAAGTGTTGTAGAATGGTAATATCGAGGCAGACAAGAACCATATCACCAGGGAGAG 739
||||||||||||| |||||||||||||||| |||||||||||| ||||| | ||| ||||
Sbjct 706 AAATCAAGTGTTGAAGAATGGTAATATCGAAGCAGACAAGAACAATATCTCTAGGAAGAG 765
Query 740 CATTCCTGCATCTCGTATTGCAATTATCAGAGACAGAGAGAAAGATCGGTATGATCCTGA 799
|| |||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||
Sbjct 766 CAATCCTGCATCTCGTATTGCAATTCTCAGAGACAGAGAGAAAGATCGATATGACCCTGA 825
Query 800 CTATGACCGCAGCTATGATAGGTACATTAGTAACCTCCCAGTTGATCAAAATTTCTGCTT 859
||||||||||||| || | ||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 826 CTATGACCGCAGCAATTACAGGTACATTAGTAACCTCCCAGTCGATCAAAATTTATGCGT 885
Query 860 GGCACACTTCAATAGTCAGAAAATGGGGACACCAATTTATGATCTGGGATTTAGCGGGTA 919
|||||||||||| | ||||| ||||||||||||||| |||||| |||||||||| |||||
Sbjct 886 GGCACACTTCAACATTCAGACAATGGGGACACCAATCTATGATATGGGATTTAGAGGGTA 945
Query 920 TAGCCAAAATCCAAGTGGTGCTGCTTCTCTTAACTTGGGTCAACATTCTGTCATGAGCCC 979
||| ||||| || | || | |||||||||||||||||||||||||||||||||||
Sbjct 946 TAG------TCCAACTGCTCCTCCATCTCTTAACTTGGGTCAACATTCTGTCATGAGCCC 999
Query 980 CTACGTCACCACGGGTTTAAACCAGCCTTCAATG-GATGCTGCTATGTACATGCAATGGC 1038
|| ||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1000 CTGCGTCACCACAGGTTTAAACCAGCCTTCAA-GAGATGCTGCTATGTACATGCAATGGC 1058
Query 1039 CAAATGCAGCAGCTGTGATGTATACTCATTCATATGACCACTTCAGAAACACCCCTTTTC 1098
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1059 CAAATGCAGCAGCTGTGATGTATACTCATTCATATGACCACTTCAGAAACTCCCCTTTTC 1118
Query 1099 AGGCGCAGTTCTATCCGCAGCCCCTTAGCTTCGATTACATGCAGAACCGGTAATCCCTTT 1158
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1119 AGGCGCAGTTCTATCCGCAGCCCCTTAGTTTCGATTACATGCAGAACCGGTAATTACTTT 1178
Query 1159 TCTCATCATGGCTAATGATTTGTGTAATCCAAATTTTGAGACAGTTT 1205
||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1179 TCTCATCATGGCTAAGGATTTGTGTAATCCAGATTTTGAGACAGTTT 1225
> AT5G05100.1 | Symbols: | Single-stranded nucleic acid binding
R3H protein | chr5:1505122-1507224 REVERSE LENGTH=1598
Length=1598
Score = 163 bits (88), Expect = 3e-39
Identities = 188/235 (80%), Gaps = 11/235 (5%)
Strand=Plus/Plus
Query 143 GGTGGATCCTTTTTTGGTCGAGGCTCTTCAAAACCCTCGACATCGTC-CAACGATTTTGC 201
|||||||||||||||||||||||||||||| |||||||| ||||||| || | |||||||
Sbjct 314 GGTGGATCCTTTTTTGGTCGAGGCTCTTCAGAACCCTCGTCATCGTCTCACC-ATTTTGC 372
Query 202 GGATGGAACTTGATATTCAGAGGTTCTTCCAGAGCCCTGATCAGCAGCTAT-TCGAGTTC 260
| ||||| |||||||| |||| |||||| || || || || ||||| | || | ||||||
Sbjct 373 GTATGGAGCTTGATATACAGAAGTTCTTTCAAAGTCCAGAGCAGCAACAATAT-GAGTTC 431
Query 261 CAGCATTTCCCTACATCATACCTCCGTCTTGCGGCCCATCGTGTTGCTAATCATTATGGA 320
|||| ||| |||||||| || || |||||| || || ||||||||| | ||||| ||
Sbjct 432 CAGCCTTTGCCTACATCTTATCTTCGTCTTATTGCTCACCGTGTTGCTCAGCATTACGGG 491
Query 321 CTAATTAC-ATCAG-TTC-GA-GATGGTGGTGCAGATGG-TAACGGGAGCAGAAT 370
||| |||| | | | || || | |||||||| ||||| | | |||| ||||||
Sbjct 492 CTATTTACCA-CTGCTTTAGAAGGTGGTGGTGTTGATGGCTCA-GGGAACAGAAT 544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5