BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483165
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40990.1 | Symbols: | DHHC-type zinc finger family protein ... 1125 0.0
> AT2G40990.1 | Symbols: | DHHC-type zinc finger family protein
| chr2:17105097-17106773 REVERSE LENGTH=1236
Length=1236
Score = 1125 bits (609), Expect = 0.0
Identities = 655/678 (97%), Gaps = 0/678 (0%)
Strand=Plus/Plus
Query 4 AGATTTTATTGCGGAGGGAGACTAGTCTTTGGTCCAGATGCATCTTCTCTCCTTCTGACA 63
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 112 AGATTTTATTGTGGAGGGAGACTAGTCTTTGGTCCAGATGCATCGTCTCTCCTTCTGACA 171
Query 64 ACAGCTATGATTGGAGGTCCTGCTCTCACTTTCTGCATACGAATGGCTTTTTTGATCGGG 123
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 172 ACAGCTATGATTGGAGGTCCTGCTCTCACTTTCTGCATACGAATGGTTTTTTTGATCGGA 231
Query 124 AAACGCTATCCTTTGTTCCACTCTCTTGTATTGTTGGGTGCACTTTTGCTCACTGTCTTG 183
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 232 AAACGCTATCCTTTGTTCCACTCTCTTATATTGTTGGGTGCACTTTTGCTCACTGTCCTG 291
Query 184 GATTTTATATTTCTCTTCTTAACATCATCGAGAGATCCCGGGATTATCCCTAGAAACAAA 243
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 292 GATTTTACATTTCTCTTCTTAACATCATCGAGAGACCCCGGGATTATCCCTAGAAACAAA 351
Query 244 GAAGCTCCTGAAGCAGAAGGGCTTGATATGATCACTCAATCCTCAGAATGGGTAAATAAC 303
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 352 GAAGCACCTGAAGCAGAAGGGCTTGATATGATCACTCAATCCTCAGAGTGGGTAAACAAC 411
Query 304 AAACTCGGTAATACAAAAATACCTCGAACCAAGGATATACTGGTGAATGGTTATACTGTC 363
||||||||||||||||| ||||||||||| ||||||||| |||||||||| || ||||||
Sbjct 412 AAACTCGGTAATACAAAGATACCTCGAACGAAGGATATATTGGTGAATGGCTACACTGTC 471
Query 364 AAAGTTAAATTTTGTGATACATGTTTGCTTTACCGGCCTCCTCGCGCCTCTCACTGTTCG 423
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 472 AAAGTTAAATTTTGTGATACATGTTTGCTTTACCGTCCTCCTCGCGCCTCTCACTGTTCA 531
Query 424 ATCTGTAACAACTGTGTTCAAAGGTTTGATCATCATTGTCCATGGGTTGGCCAATGCATC 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 ATCTGTAACAACTGTGTTCAAAGGTTTGATCATCATTGTCCATGGGTTGGCCAATGCATA 591
Query 484 GCTTTACGAAACTATCCGTACTTCATCTGTTTCATATCAACTTCAACACTCCTCTGCTTG 543
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GCCTTACGAAACTATCCATACTTCATCTGTTTCATATCAACTTCAACACTCCTCTGCTTG 651
Query 544 TACGTCTTTGTCTTCTCATGGGTCAGTATGCTTGAGGTACACGGCAAGATGTTGCTAATG 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 652 TACGTCTTTGTCTTCTCATGGGTCAGTATGCTTGAGGTACACGGCAAGATGTTGTTAATG 711
Query 604 GTCATCACAAACGACTTAGTATTTGTTGTTCTCATCCTCTACTGCTTTGTCGTTGTCTGG 663
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 712 GTCATCACAAACGACTTAGTATTTGTTGTTCTCATCCTCTACTGCTTCGTCGTTGTCTGG 771
Query 664 TTTGTCGGCGGGCTCACT 681
||||||||||||||||||
Sbjct 772 TTTGTCGGCGGGCTCACT 789
Score = 595 bits (322), Expect = 2e-169
Identities = 396/428 (93%), Gaps = 19/428 (4%)
Strand=Plus/Plus
Query 682 ACAACTTATGAGAATTTCCGGTATCGGTATGACAAGAAAGAAAACCCTTATGGAAAGGGT 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 ACAACTTATGAGAATTTCCGGTATCGGTATGACAAGAAAGAAAACCCTTATGGAAAGGGT 882
Query 742 CTCTTCAAGAACCTTTATGAGTTGTTCTTTGCTAGAATTCCACCTCCCATGA-CAAACTT 800
|||||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 883 CTCTTCAAGAACCTATATGAGTTGTTCTTTGCCAGAATTCCACCTCCCATGATC-AACTT 941
Query 801 CAGAGACTGGGCTCCAGAGGAACCTGACGAGGAGGTTGGATCCATTGCATCTGAGCTAGA 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 CAGAGACTGGGCTCCAGAGGAACCTGACGAGGAGGTTGGATCCATTGCATCTGAGCTAGA 1001
Query 861 CCGAACTTTTGGACCCCGAGGAGATAAATATGATATGGAAATGGAAATTGGTGGTTGCAA 920
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1002 CCGAACTTTTGGACCCCGAGGAGATAAATATGATATGGAAATGGAAATTGGCGGTTGCAA 1061
Query 921 AAACAGTAAGGGCGGTTTGCGCCTCCAGACACTGGAGTATGACAACAACAACAG--G-GA 977
||||||||||| |||||| | ||||| |||||||||||||||||||||||||| | ||
Sbjct 1062 AAACAGTAAGGTCGGTTTACAACTCCATACACTGGAGTATGACAACAACAACAGCAGCGA 1121
Query 978 AGAAACTGTCAAGAAGAAAGG-GTTAGACGAAGGAACCGCAGGGACAACTACCGCGTTTT 1036
||||||||||||||||||||| || || ||||| |||||| | |||||||
Sbjct 1122 AGAAACTGTCAAGAAGAAAGGTGTAAG-CGAAGAAACCGC-----C-------GCGTTTT 1168
Query 1037 ACATCCCGGGGATTCAAGAACCCACAAATATTACAAGAAACTCGAGCATTGATGTGAGAT 1096
||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||
Sbjct 1169 ACATCCCGGGGATTCAAGAACCCGCGAATATAACAAGAAACTCGAGCATTGATGTGAGAT 1228
Query 1097 CGAGGTAG 1104
||||||||
Sbjct 1229 CGAGGTAG 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54116187510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5