BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483169
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41020.1 | Symbols: | WW domain-containing protein | chr2:1... 2217 0.0
> AT2G41020.1 | Symbols: | WW domain-containing protein | chr2:17117263-17121119
FORWARD LENGTH=1772
Length=1772
Score = 2217 bits (1200), Expect = 0.0
Identities = 1372/1454 (94%), Gaps = 16/1454 (1%)
Strand=Plus/Plus
Query 37 TTACGACGTTGTAG----CTCAGTCTAAAGGATTCGGAGGTTGAAGTTGAACTGAATAAT 92
||||||||||| || |||||||||||||||||||||||||| | |||||| ||||||
Sbjct 105 TTACGACGTTGAAGCTCCCTCAGTCTAAAGGATTCGGAGGTTGACGCTGAACTAAATAAT 164
Query 93 GGGAGAAGAGCTGCAACATCAGCAGAA----T-AAC-CAGACATCTAATTCTGGTTATGG 146
|||||||||||||||| |||||||||| | | | ||||||||||| |||||||||
Sbjct 165 GGGAGAAGAGCTGCAATATCAGCAGAATGGTTCATCTGTGACATCTAATTATGGTTATGG 224
Query 147 AAGTTCGCTTGCCTATGATCAATCTCAAGACTTTGAATCTGCCGCAACCAATGCTCTTCT 206
|||||||||||| || ||||||||||||||| ||||||||||||||| || |||||||||
Sbjct 225 AAGTTCGCTTGCTTACGATCAATCTCAAGACATTGAATCTGCCGCAAACACTGCTCTTCT 284
Query 207 CCGAGAACAAGAAATTGAAACGCAGAAGATTATACGAGGTCAAAGAGAAGCTGGGACTTC 266
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 285 CCGAGAACAAGAAATAGAAACGCAGAAGATTATACAAGGTCAAAGAGAAGCTGGGACTTC 344
Query 267 AGTAGCTGGAGACTCTGAGCATAACACTGATATTCTTCGAGATCGTTCTGACCCCAATGC 326
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 345 AGTAGCCGGAGACTCTAAGCATAACACTGATATTCTTCGAGATCGTGCTGACCCCAATGC 404
Query 327 TCTTAAGGAACATTTGCTAAAGTTCACTGCAAATCATAGAGCAGAAGCAGCGGCAAAGCG 386
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 TCTAAAGGAACATTTGCTAAAGTTCACTGCAAATCATAGAGCAGAAGCAGCGGCAAAGCG 464
Query 387 TGGTGGGAGTGTCAGTACATGCGGAGAAGGTAATGTGGATGTTGGAAACGGTTATGGTAT 446
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 TGGTGGGAGTGTGAGTACATGCGGAGAAGGTAATGTGGATGTTGGAAACGGTTATGGTAT 524
Query 447 TCCGGGTGGAGTTGCTTACGCGGGCCACTCTGAGCTCACTGGGAAGCCTGAACCTACCAA 506
|||||||||||||| |||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct 525 ACCGGGTGGAGTTGCATACGCGGGTCACTCCGAGCTCAGTGGGAAGCCTGAACCTACCAA 584
Query 507 TGCTTCAAACAATTTGCCTGAATATCTCAAACAAAAATTAAGGGCCAGGGGCATTCTCAG 566
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 585 TGCTTCAAACAATTTGCCTGAATATCTCAAACAAAAATTAAAGGCCAGGGGAATTCTCAG 644
Query 567 GGATGGTACAGGGGCTGTTTCATCCAA--CATGCAAGATACATCAGCGGTTAGTTGGAAT 624
|||||| ||||||||||| ||||||| || | ||||||||||||||||||||||||||
Sbjct 645 AGATGGTGCAGGGGCTGTTACATCCAACCCA-G-AAGATACATCAGCGGTTAGTTGGAAT 702
Query 625 AGACAGACAACTTCACCTTTTAC-GGCTAATGCAAGCACTTTACCATTAGGATGGGTAGA 683
|||||| |||||| ||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 703 AGACAGGCAACTTTACCTTTT-CAGGCTAATGCAAGCACCTTACCATTAGGATGGGTAGA 761
Query 684 TGTAAAAGATCCTGCTAGTGGTGCTACATATTACTATAACCAGCAGACTGGAACATGCCA 743
|| |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 762 TGCAAAAGATCCTGCCAGTGGTGCTACCTATTACTATAACCAGCACACTGGAACATGCCA 821
Query 744 GTGGGAAAGGCCTGTTGAGCTATCTTATACCACTTCAAGTGCACCACCTGTGCCTCCTAG 803
||||||||||||||||||||| |||||| |||||||||||||||||||||| | | |||
Sbjct 822 GTGGGAAAGGCCTGTTGAGCTTTCTTATGCCACTTCAAGTGCACCACCTGTACTTTCTAA 881
Query 804 AGAAGAGTGGATTGAAACACTTGATGAAGCATCTGGCCATAAGTATTTCTACAATACAAG 863
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 882 AGAAGAGTGGATTGAAACATTTGATGAAGCATCTGGCCATAAGTATTTCTACAATACAAG 941
Query 864 GACACATGTGTCACAGTGGGAACCTCCAGCTTCTTTACAGAAGCCTGCTCCCACAAACTC 923
|||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 942 GACACATGTGTCTCAGTGGGAACCTCCAGCTTCTTTACAGAAGCCCGCTGCCACAAACTC 1001
Query 924 TAACAACGCTGTCACCCAAAGTACGGCTAATGGGAAGGAGGAGCATCCTCCATCTCAGAT 983
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1002 TAACAACGCTGTTACCCAAAGTACGGCTAATGGGAAGGGGGAGCATCCTCCATCTCAGCT 1061
Query 984 GCCAAGATGCAGCGGATGTGGGGGCTGGGGAGTGGGCCTTGTCCAGAGATGGGGTTATTG 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 GCCAAGATGCAGCGGATGTGGGGGCTGGGGAGTGGGCCTTGTCCAGAGATGGGGTTATTG 1121
Query 1044 TGTCCACTGTACCAGGGTTTTCAATCTCCCAGAACAGCAATTCTTGCCAGCAAATTTAAA 1103
||| || ||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1122 TGTTCATTGTACCAGGGTTTTCAATCTCCCAGAAAAGCAATTCTTGCCAGCACATTTAAA 1181
Query 1104 CCATTTCACAAATGCAGGAGATTCTGGCCAAAAGGATCCGAATCAGAGGTCTAGTTCAAA 1163
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1182 CCATTTCACAAATGCAGGCGATTCTGGCCAAAAGGATCCGAATCAGAGGTCCAGTTCAAA 1241
Query 1164 ACCTCCCATGAAAAAAGTAATAGGCAAAAAGCGTGCTCATGCCGAGGATGATGAGTTGGA 1223
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1242 ACCTCCCATGAAAAAAGTAATAGGCAAAAAGCGTGCTCATGCCGAAGATGATGAGTTGGA 1301
Query 1224 TCCAATGGACCCGAGCTCTTACTCAGATGCTCCACGGGGAGGCTGGGTTGTTGGACTGAA 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 TCCAATGGACCCGAGCTCTTACTCAGATGCTCCACGGGGAGGCTGGGTTGTTGGACTGAA 1361
Query 1284 AGGAGTACAACCGCGAGCCGCTGATACAACTGCCACGGGTCCTCTGTTTCAACAGCGACC 1343
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1362 AGGAGTACAACCGCGAGCCGCTGATACAACTGCTTCGGGTCCTCTGTTTCAACAACGACC 1421
Query 1344 GTATCCATCACCTGGAGCTGTTCTGAGGAGAAACGCAGAGGTGGCATCATCGCAGAAGAA 1403
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1422 ATATCCATCACCTGGAGCTGTTCTGAGGAGAAACGCAGAGGTGGCATCATCACAGAAGAA 1481
Query 1404 GAAACCAAACTCTCATTTCACAGAAATCACAAAGAGAGGTGATGGAAGTGATGGTCTTGG 1463
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1482 GAAACCAAACTCTCAGTTCACAGAAATTACAAAGAGAGGCGATGGAAGTGATGGTCTTGG 1541
Query 1464 AGACGCAGATTGAG 1477
||||||||||||||
Sbjct 1542 AGACGCAGATTGAG 1555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72840990795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5