BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483175
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41070.1 | Symbols: EEL, ATBZIP12, DPBF4 | Basic-leucine zip... 1522 0.0
> AT2G41070.1 | Symbols: EEL, ATBZIP12, DPBF4 | Basic-leucine zipper
(bZIP) transcription factor family protein | chr2:17130788-17132370
FORWARD LENGTH=1269
Length=1269
Score = 1522 bits (824), Expect = 0.0
Identities = 919/965 (95%), Gaps = 6/965 (1%)
Strand=Plus/Plus
Query 370 GCTATATCTATGGGTTCTATTAGAGGAAACGTTGAAGAACCTATATCTCAGTCGTTAACT 429
|||| || |||||||||||||||||||||| ||||||| |||||||||||||| |||||
Sbjct 310 GCTACATATATGGGTTCTATTAGAGGAAACATTGAAGAGCCTATATCTCAGTCATTAACG 369
Query 430 AGGCAAAACTCTCTCTATAGCTTAAAGCTCCATGAGGTTCAAACCCACTTAGGCAGTTCT 489
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 370 AGGCAGAACTCTCTCTATAGCTTAAAGCTCCATGAGGTTCAAACCCACTTAGGAAGTTCT 429
Query 490 GGAAAACCACTAGGAAGCATGAACCTTGATGAGCTTCTCAAGACTGTCTTGTCTCCAGCT 549
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 430 GGAAAACCACTAGGAAGCATGAACCTTGATGAGCTTCTCAAGACTGTCTTGCCACCAGCT 489
Query 550 GAGGAAGGTCTTGTTCGTCAGGGAAGCTTGACGTTACCTCGAGATCTTAGTAAAAAGACA 609
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 490 GAGGAAGGGCTTGTTCGTCAGGGAAGCTTGACGTTACCTCGAGATCTCAGTAAAAAGACA 549
Query 610 GTTGATGAGGTCTGGAGAGATATCCAACAGGACAAGGATGGAAACAGTACCAGTACTACT 669
|||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||
Sbjct 550 GTTGATGAGGTCTGGAGAGATATCCAACAGGACAAGAATGGAAACGGTACTAGTACTACT 609
Query 670 ACTACTCATAAGCAGCCTACACTCGGTGAAATCACTCTTGAGGATTTGTTGTTGAGAGCT 729
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 610 ACTACTCATAAGCAGCCTACACTCGGTGAAATAACACTTGAGGATTTGTTGTTGAGAGCT 669
Query 730 GGTGTAGTGACTGAGACAATAGTCCCTCAAGAAAATGTTGTTAACATAGCTTCAAATGGG 789
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 670 GGTGTAGTGACTGAGACAGTAGTCCCTCAAGAAAATGTTGTTAACATAGCTTCAAATGGG 729
Query 790 CAATGGGTTGAGTATCATCATCAGCCTCAACAACAACAAGGGTTTATGACATATCCGGTT 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 CAATGGGTTGAGTATCATCATCAGCCTCAACAACAACAAGGGTTTATGACATATCCGGTT 789
Query 850 TGTGAGATGCAAGATATGGTGATGATGGGTGGATTATCGGATACACCACAAGCGCCTGGA 909
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 TGCGAGATGCAAGATATGGTGATGATGGGTGGATTATCGGATACACCACAAGCGCCTGGG 849
Query 910 AGGAAAAGAGTAGCTGgagagattgtggagaagactgttgagaggagacagaagagaatg 969
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 850 AGGAAAAGAGTAGCTGGAGAGATTGTGGAGAAGACTGTTGAGAGGAGACAGAAGAGGATG 909
Query 970 atcaagaacagagaaTCTGCAGCACGTTCACGAGCTAGGAAACAGGCTTATACTCATGAA 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 910 ATCAAGAACAGAGAATCTGCAGCACGTTCACGAGCTAGGAAACAGGCTTATACACATGAA 969
Query 1030 TTAGAGATCAAGGTTTCAAGATTAGAAGAAGAAAACGAAAAACTTCGGAGGCTTAAGGAG 1089
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 970 TTAGAGATCAAGGTTTCAAGGTTAGAAGAAGAAAACGAAAAACTTCGGAGGCTAAAGGAG 1029
Query 1090 GTGGAGAAGATCCTGCCAAGTGAACCACCACCGGATCCTAAGTGGAAACTCCGGCGAACA 1149
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1030 GTGGAGAAGATCCTACCAAGTGAACCACCACCAGATCCTAAGTGGAAGCTCCGGCGAACA 1089
Query 1150 AACTCTGCTTCTCTTTGATCTTAAAGACTCATATTTCTTTCTTCACCTTCTTCTTTGTGT 1209
|||||||||||||| ||||| ||||||||| | | ||||||| | |||||||||||||
Sbjct 1090 AACTCTGCTTCTCTCTGATCCTAAAGACTC-T-T--CTTTCTTT-C-TTCTTCTTTGTGT 1143
Query 1210 TGGTTTATATCAGACAGCTTTGTTCTTTGTATATTCTGTAGACTTTATTGACATTGAACA 1269
||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1144 TGGTTTATATCAGACCGCTTTGTTCTTTGTATATTGTGTAGACTTTATTGACTTTGAACA 1203
Query 1270 GTATGTCTTTATAGACATTTCTTGAGTGTATTTCTCTACTGCAGCTAGTTCAAGCTTTTT 1329
| ||||||||||| |||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 1204 GCATGTCTTTATAAACATTTCTTGAGTGTATTCCTCTTTTGCAGCTAGTTCAAACTTTTT 1263
Query 1330 AAGTA 1334
||||
Sbjct 1264 GAGTA 1268
Score = 335 bits (181), Expect = 7e-91
Identities = 259/293 (88%), Gaps = 20/293 (7%)
Strand=Plus/Plus
Query 29 TTTCTCTTTCTCTTTCTACTA----TCTCCTGTGGAGAAACT-A--AG---gagatagag 78
||||||||||||||||||||| ||||||||||||||||| | || |||| ||||
Sbjct 23 TTTCTCTTTCTCTTTCTACTATTTCTCTCCTGTGGAGAAACTCAGGAGATAGAGAGAGAG 82
Query 79 agaga-cagagaagaga--ATGTGTGTTTGGTTTTATAATCTCTCTGCTCATACaaaaaa 135
||||| |||||||||| |||| |||||||||||||||||||||| ||||||| ||
Sbjct 83 AGAGAGAAGAGAAGAGAGCATGTATGTTTGGTTTTATAATCTCTCTACTCATAC---CAA 139
Query 136 aTATTTGTCTCAGACCCACCACTTGGACAGACAGAACCCCAAGCTCCTTTCTTC-CTTTT 194
| ||||||||||||||||||||||||||||| |||| |||||||||||||| || |||||
Sbjct 140 AGATTTGTCTCAGACCCACCACTTGGACAGAGAGAA-CCCAAGCTCCTTTC-TCTCTTTT 197
Query 195 TCTCGATCTGCTCTTTCTTAATCTCCTTTTTTGAAACTTGAAGCCAGTT-CAACATCATC 253
||||||||| ||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 198 TCTCGATCTACTCCTTCTTAATCTCCTTTTTTGAAACTTGAAGCCACTTTCAACATCATC 257
Query 254 CTTAAACTTTTGTTCCCTTCTTCGCAATCTCCTACCACTTCTCATTTCTCTAG 306
||||||||||||||||||| ||| ||||||||| |||| ||||||||||||||
Sbjct 258 CTTAAACTTTTGTTCCCTTATTCACAATCTCCTGCCACCTCTCATTTCTCTAG 310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66013716675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5