BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483180
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41120.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 1467 0.0
AT2G41110.2 | Symbols: CAM2 | calmodulin 2 | chr2:17140229-1714... 176 3e-43
> AT2G41120.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast; EXPRESSED IN:
19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF309
(InterPro:IPR005500); Has 349 Blast hits to 349 proteins in
112 species: Archae - 2; Bacteria - 189; Metazoa - 0; Fungi
- 0; Plants - 31; Viruses - 0; Other Eukaryotes - 127 (source:
NCBI BLink). | chr2:17141275-17142457 REVERSE LENGTH=1003
Length=1003
Score = 1467 bits (794), Expect = 0.0
Identities = 917/976 (94%), Gaps = 10/976 (1%)
Strand=Plus/Plus
Query 1 TTTGACTTTGATAATGGCACTTTCTCCGAAACATttccaggttccttcatctttcacgct 60
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 26 TTTGACTTTGATAATGGCAGTTTCTTCGAAACATTTCCAGGTTCCTTCATCTTTCACGCT 85
Query 61 tcctccatcttcttccttcagctccttaattccttcttctccactctctgttacttcttc 120
|||||||||||||| ||||||||||||||| |||||||||||| ||||||||||| ||||
Sbjct 86 TCCTCCATCTTCTTTCTTCAGCTCCTTAATCCCTTCTTCTCCAATCTCTGTTACTGCTTC 145
Query 121 AACGATTCGAGCCTCCACAAGATTTAGCTCCATACGCGTCCGTTTCAGTCGACGATCGAT 180
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||
Sbjct 146 AACGATTCGAGCCTCCACAAAATTTAGCTCCATACGCGTCCGTTTCAGTCGAAGATCAAT 205
Query 181 CGTCAGATACAATGACCACGCCGGAGAAGACGAAGAAGATAGTGACGAGGATAAGGAAGA 240
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 206 CGTCAGATACAACGACCACGCCGGAGAAGACGAAGAGGATAGTGACGAGGATAAGGAAGA 265
Query 241 AGATTGGAGTTTTGAGGAAGCAGTAACTCTCTTCAACAAGAGAGATTATTACAAAAGTCA 300
| ||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 266 ATATTGGAGCTTTGAGGAAGCAGTGACTCTCTTCAACAAGAGGGATTATTACAAAAGTCA 325
Query 301 CGACGCGCTTGAAGCTCTTTGGATTCAAGCTGAAGAACCAACTCGTACCTTAATCCATGG 360
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 326 TGACGCGCTTGAAGCTCTTTGGATTCAAGCAGAGGAACCAACTCGTACCTTAATCCATGG 385
Query 361 AATTCTTCAATGTGCCGTTGGATTTCACCATCTCTTCAACAGCAACCATAAAGGAGCGAT 420
||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 386 AATTCTTCAATGTGCTGTTGGATTTCACCATCTATTCAACAACAACCATAAAGGAGCGAT 445
Query 421 GATGGAGTTAGGAGAAGGAGTATGTAAGCTAAGGAAGATGAATTTCGAAGGTGGACCGTT 480
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 446 GATGGAGTTAGGAGAAGGAGTATGTAAGCTAAGGAAGATGAATTTCGAAGACGGACCGTT 505
Query 481 TCACGAATTCGAACGAGATGTTTCGGCCGTTCTTGAATTCGTTTATCAAACTCAGCTCGA 540
||| |||||||| |||||||| || || ||||||||||||||||||||||||||||| ||
Sbjct 506 TCATGAATTCGAGCGAGATGTCTCCGCAGTTCTTGAATTCGTTTATCAAACTCAGCTTGA 565
Query 541 ACTCGCTGCTTGTTCAGAAGATATGTGTTTGACGATGGATCAATCAGACAGATCGTATCA 600
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 ACTTGCTGCCTGTTCAGAAGATATGTGTTTGACGATGGATCAATCAGACAGATCGTATCA 625
Query 601 ACTCTTGGGTGGTTATGCAGCGGGACAGAGTATATACAGCTTAGAGACTCTGGTTGACTT 660
|||||| |||||||||||||| ||| ||||||| ||||||||||||||| || |||||||
Sbjct 626 ACTCTTAGGTGGTTATGCAGCTGGAGAGAGTATTTACAGCTTAGAGACTGTGCTTGACTT 685
Query 661 CAACAATGGAATGTCTGAGAAAACTTCTATACTCTTCTCTCCTTTG-AGTTCATCGTCTG 719
|||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct 686 CAACAATGGAATGTCTGAGACAACTTCTATACTCTTCTCTCCTTTACA-TTCATCGTCTG 744
Query 720 AGCCAACACGGGTTAAGCTCCCTACC-TTAACCGCAACCGATAAGCATCTTCTTGCTTTT 778
||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |
Sbjct 745 AGCCAACTCGGGTTAAGCTCCCTACCCTTA-CCGCAACCGATAAGCATCTTCTTGCTTCT 803
Query 779 ACATACGACCAGAGATTCTGAAGAGAATGATCAAATAAGAAGATAATAGAAGA---TCTC 835
||||||||| | ||||||| |||||||||||||| || ||||||||||||||| ||||
Sbjct 804 ACATACGACGACAGATTCTAAAGAGAATGATCAA-TACGAAGATAATAGAAGAAGATCTC 862
Query 836 ATTACTGTTATATTTCAAGAATCAGGTTCTGAACCTATCAATAACATGAACAATGAGTCA 895
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 863 ATTACTGTTATATTTCAAGAATCAGGTTCTGAACCTGTCAATAACATGAACAATGAGTCA 922
Query 896 TTTAGACAAGAAG-TAAAAACACATAACACCCCTGTCTTTTTAACCACCAAAAACCAGCC 954
||||||||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 923 TTTAGACAA-AAGGTAAAAACACATAACATTCCTGTCTTTTTAACCAGCAAAAACCAGCC 981
Query 955 ATGAATGAAATTTTAG 970
||||||||||||||||
Sbjct 982 ATGAATGAAATTTTAG 997
> AT2G41110.2 | Symbols: CAM2 | calmodulin 2 | chr2:17140229-17141393
FORWARD LENGTH=837
Length=837
Score = 176 bits (95), Expect = 3e-43
Identities = 108/114 (95%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 858 CAGGTTCTGAACCTATCAATAACATGAACAATGAGTCATTTAGACAAGAAG-TAAAAACA 916
|||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 837 CAGGTTCTGAACCTGTCAATAACATGAACAATGAGTCATTTAGACAA-AAGGTAAAAACA 779
Query 917 CATAACACCCCTGTCTTTTTAACCACCAAAAACCAGCCATGAATGAAATTTTAG 970
||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 778 CATAACATTCCTGTCTTTTTAACCAGCAAAAACCAGCCATGAATGAAATTTTAG 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47471268915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5