BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483184
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41150.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2019 0.0
AT3G56750.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1098 0.0
> AT2G41150.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: leaf; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56750.1);
Has 127 Blast hits to 127 proteins in 16 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 117; Viruses - 0; Other Eukaryotes - 10 (source: NCBI
BLink). | chr2:17153847-17155982 FORWARD LENGTH=1568
Length=1568
Score = 2019 bits (1093), Expect = 0.0
Identities = 1296/1390 (93%), Gaps = 29/1390 (2%)
Strand=Plus/Plus
Query 1 ATTAATGGCGACAATGAGCAAAACCCATCATAGGTCAAAAGCCACTCCGA-GATCTCAAA 59
||||||||||||||||||| |||||| |||| || |||||||||||| | |||||||||
Sbjct 1 ATTAATGGCGACAATGAGC-AAACCC--CATAAGTTAAAAGCCACTCC-AGGATCTCAAA 56
Query 60 GACTTGTTCTGTTATGTATAGTCGCCGTTGCATTTCTCCTCCTTTTCACTTCGGTGATCT 119
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 57 GACTTGTTCTGTTATGTATAGTCGCAGTTGCATTTCTCCTCCTTTTCACTTCGGTGATCT 116
Query 120 CCACCGGAGGATTGGCTTTACCGTATCGGACAACCCTAATTGGTTATTTCGTGAGGTCAA 179
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 117 CCACCGGCGGATTGGCTTTACCGTATCGGACAACCCTAATTGGTTATTTTGTGAGGTCAA 176
Query 180 CTCGAAGCAAGAGACAACATAGTTTGTCCGACAAGTACTTGTATTGGGGAAACAGAATCG 239
|||||| ||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 177 CTCGAAACAAGACACAGCATAGTTTGTCGGACAAGTACTTGTACTGGGGAAACAGAATCG 236
Query 240 ATTGTCCTGGTAAGAACTGCGAGACCTGTGCCGGTTTAGGTCACCAAGAATCTAGCCTTA 299
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 237 ATTGTCCTGGTAAGAACTGTGAGACCTGTGCCGGTTTGGGTCACCAAGAATCTAGCCTTA 296
Query 300 GATGTGCCCTTGAAGAAGCCATGTTTCTTAACAGGACTTTTGTAATGCCATCTCGGATGT 359
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 297 GATGTGCCCTTGAAGAAGCCATGTTTCTGAACAGGACTTTTGTAATGCCATCTCGGATGT 356
Query 360 GCATCAATCCAATACATAACAAGAAAGGTATACTTAATCGATCTGATAATGAAACTACAG 419
||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| ||
Sbjct 357 GCATCAATCCAATACATAACAAGAAGGGTATACTTAATCGATCCAACAATGAAACTAGAG 416
Query 420 AGGAAAGTTGGGAAGTTAGCTCGTGTGCAATGGAATCACTGTATGATATTGATCTCATCT 479
|||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 417 AGGAAAGTTGGGAAGTGAGCTCTTGTGCAATGGAATCATTGTATGATATTGATCTCATCT 476
Query 480 CTGAGAAGATACCTGTGATCTTGGATGACTCAGAAACATGGCACATTGTGCTATCGACGA 539
||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 477 CTGAGAAAATACCTGTGATCTTGGATGACTCGGAAACATGGCACATAATGCTATCGACGA 536
Query 540 GTATGAAATTGAAAGAACGAGGGAGTGCGCATGTATATGGGGCTAACAGGAATGAGCTAA 599
||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||
Sbjct 537 GTATGAAATTGAAAGAACGTGGGAGTGCGCATGTATATGGGGCAAACAGGCATGAGCTAA 596
Query 600 ATAACTCCAGCCACTTTACAAATCTTTTGCTCATTAACCGAACTGCAAGTCCCCTTGCAT 659
|| |||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 597 ATGACTCTAGCGACTTTACAAATCTTTTGCTCATTAACCGAACCGCAAGCCCCCTTGCAT 656
Query 660 GGTTTGTTGAATGCAAGGATCGAGGTAATCGTAGCGACGTCATGCTTCCTTATTCATTTC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GGTTTGTTGAATGCAAGGATCGAGGTAATCGTAGCGACGTCATGCTTCCTTATTCATTTC 716
Query 720 TCCCAAA-TATGGCAGCATCAAGATTGAGAGATGCTGCCGAAAAGATAAAGGCACAACTT 778
||| | | |||||||||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 717 TCC-AGACTATGGCAGCATCAAGATTGAGAGATGCTGCAGAAAAGATAAAAGCAAAACTT 775
Query 779 GGTGTTTACGATGCAATCCATGTTCGTCGAGGTGACAAACTGAAAACAAGAAAAGACAGG 838
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GGTGATTACGATGCAATCCATGTTCGTCGAGGTGACAAACTGAAAACAAGAAAAGACAGA 835
Query 839 TTTCGCGTTGAAAGAA-CTCAGTTTCCACATTTAGACAGAGACACACGGCCAGAGTTCAT 897
|||||||| ||||||| | ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 836 TTTCGCGTGGAAAGAAGC-CAGTTTCCACATTTAGATAGAGACACACGGCCAGAATTCAT 894
Query 898 CATTGGCAGAATTCAGAAGCAAATCCCACCAGGACGGACTCTTTTTATCGGTTCTAATGA 957
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CATTGGCAGAATTCAGAAACAAATCCCACCAGGACGGACTCTTTTTATCGGTTCTAATGA 954
Query 958 GAGAACCCCTGGATT-CTTTTCACCTCTAGCTATCAGGTATAAAGTGGCTTATTCATCGA 1016
|||||||||| ||| ||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 955 AAGAACCCCTG-ATTTCTTTTCACCTCTAGCTATCAGATACAAAGTGGCGTATTCATCGA 1013
Query 1017 ATTTTAGTGAGATTTTGGATCCGATAATCGAAAACAATTATCAGTTGTTCATGGTGGAGA 1076
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 1014 ATTTTAGTGAGATTTTGGATCCGATCATCGAGAACAATTACCAGTTGTTCATGGTGGAGA 1073
Query 1077 GGCTGATAATGATGGGTGCAAAGACATTCTTCAAAACATTTAGAGAGTACGAAACGGATC 1136
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1074 GGTTGATAATGATGGGTGCAAAGACATTCTTCAAAACATTTAGAGAGTACGAAACCGATC 1133
Query 1137 TCACTTTGACAGATGATCCGAAAAAGAACAAGAATTGGGAAATACCAGTTTACACCATGG 1196
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1134 TCACTTTGACTGATGATCCGAAAAAGAACAAGAACTGGGAAATACCAGTTTACACCATGG 1193
Query 1197 ATAAAGGCAAAGAAGCAGCAAGCTAAACTATCCATGATCTCACTAG-CAA-AG-A----C 1249
|| ||||||||||||||||||||||||||||| ||||||||||||| || || | |
Sbjct 1194 ATGAAGGCAAAGAAGCAGCAAGCTAAACTATCTATGATCTCACTAGGCACTAGCAAAGTC 1253
Query 1250 TACACAACGATTCAGACAAGAGTCTCATCACTTTTCAATTACTTGGAGTTAAAATCCTAA 1309
|||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| |||||
Sbjct 1254 TACACAACGATTCAGACAAGAGTCTCATTACTCTTCAAATACTTGGAGTTAAAAGCCTAA 1313
Query 1310 TCTTGTCTGAAGATTCTATTGCCGGTACTCGAAGAAATCTGTGTATGTG-ACACCAGAGA 1368
|||| ||||||||||||||||| || | ||| |||||||||||| | |||||||
Sbjct 1314 TCTTATCTGAAGATTCTATTGCA--TA---G--GAACTCTGTGTATGTGTA-ACCAGAGT 1365
Query 1369 CT--AACAGA 1376
|| ||||||
Sbjct 1366 CTCTAACAGA 1375
> AT3G56750.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G41150.2);
Has 128 Blast hits to 128 proteins in 16 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses
- 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr3:21018089-21020431
REVERSE LENGTH=1688
Length=1688
Score = 1098 bits (594), Expect = 0.0
Identities = 1032/1240 (83%), Gaps = 44/1240 (4%)
Strand=Plus/Plus
Query 3 TAATGGCGACAATGAGCAAAACCCATCATAGGTCAAAAGCCAC-TCCGAGATCTCAAAGA 61
||||||||||||||||| ||| | ||| ||| | ||| |||| || | ||||||| |
Sbjct 238 TAATGGCGACAATGAGC-AAA-GC-TCAAAGGACCAAACCCACTTCTG-GATCTCAGCGT 293
Query 62 CTTGTTCTGTTATGTATAGTCGCCGTT-GCATTTCTCCTCCTTTTCACTTCGGTGATCTC 120
||||||||||| |||||||| | ||| |||| |||||||| ||| |||||||||||||
Sbjct 294 CTTGTTCTGTTCTGTATAGTTG-TGTTCTCATTCCTCCTCCTCTTCTCTTCGGTGATCTC 352
Query 121 CACCGG-AGGATTGGCTTTACCGTATCGGAC-AACCCTAATTGGTTATTTCGTGAGGTCA 178
|||||| | ||||| || || |||| || ||||||||| | ||||||||| ||||
Sbjct 353 CACCGGCA-AATTGGGATTGCCTTATC-AACAAACCCTAATCGACTATTTCGTGTGGTCT 410
Query 179 ACTCGAAGCAAGAGACAACA-TAGTTTGTCCGACAAGTACTTGTATTGGGGAAACAGAAT 237
|||| | |||||||| || | | ||||| || ||||||||||||||||||||||||||
Sbjct 411 CCTCGTGGTAAGAGACAGCATTCG-TTGTCGGAGAAGTACTTGTATTGGGGAAACAGAAT 469
Query 238 CGATTGTCCTGGTAAGAACTGCGAGACCTGTGCCGGTTTAGGTCACCAAGAATCTAGCCT 297
|||||||||||| || ||||||||||||||||| || || ||||||||||||||||||||
Sbjct 470 CGATTGTCCTGGCAAAAACTGCGAGACCTGTGCTGGCTTGGGTCACCAAGAATCTAGCCT 529
Query 298 TAGATGTGCCCTTGAAGAAGCCATGTTTCTTAACAGGACTTTTGTAATGCCATCTCGGA- 356
|| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||
Sbjct 530 CAGGTGTGCACTTGAAGAAGCCATGTTTCTTAACAGGACCTTTGTAATGCCTTCT-GGAA 588
Query 357 TGTGCATCAATCCAATACATAACAAGAAAGGTATACTTAATCGATCTGATAATGAAACTA 416
||||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 589 TGTGCATAAATCCAATACATAATAAGAAAGGTATACTCAATCGATCTGATAACAAAACTA 648
Query 417 CAGAGGAAAGTTGGGAAGTTAGCTCGTGTGCAATGGAATCACTGTATGATATTGATCTCA 476
|||||||| ||||| | ||||| ||||||||||| ||| ||||||| ||||| ||||
Sbjct 649 CAGAGGAAGGTTGGCTTGGGAGCTCTTGTGCAATGGACTCATTGTATGACATTGACCTCA 708
Query 477 TCTCTGAGAAGATACCTGTGATCTTGGATGACTCAGAA-ACATGGCACATTGTGCTATCG 535
| |||||||||||||| ||||| || |||||||| || |||||||| ||||| |||||
Sbjct 709 TATCTGAGAAGATACCGGTGATATTAGATGACTCT-AAGACATGGCATATTGTTCTATCC 767
Query 536 ACGAGTATGAAATTGAAAGAACGAGGGAGTGCGCATGTATA-TGGGGCTAACA-GGAATG 593
|| |||||||| ||| |||| |||||| ||| ||||| || ||| | | || || ||
Sbjct 768 ACAAGTATGAAGTTGGGAGAAAGAGGGATTGCACATGT-TAGTGGAG-TCACTCGGCAT- 824
Query 594 AG-CT-AAATA-ACTCCAGCCACTTTACAAATCTTTTGCTCATTAACCGAACTGCAAGTC 650
|| || ||| | | || | | ||| ||||||| ||| ||||||||||||| |||||||
Sbjct 825 AGGCTTAAAGAGAGTC-A-CTACT---CAAATCTCTTGATCATTAACCGAACCGCAAGTC 879
Query 651 CCCTTGCATGGTTTGTTGAATGCAAGGATCGAGGTAATCGTAGCGAC-GTCATGCTTCCT 709
| ||||||||||| ||||| ||||| ||| || | |||||||||| | ||||||||||||
Sbjct 880 CTCTTGCATGGTTCGTTGAGTGCAAAGATAGAAGCAATCGTAGCG-CTGTCATGCTTCCT 938
Query 710 TATTCATTTCTCCCAAATATGGCAGCAT-CAAGATTGAGAGATGCTGCCGAAAAGATAAA 768
|||||||||||||| ||||||||||| | ||| ||||||| | || || |||||||||||
Sbjct 939 TATTCATTTCTCCCTAATATGGCAGC-TGCAAAATTGAGAAACGCCGCAGAAAAGATAAA 997
Query 769 GGCACAACTTGGTGTTTACGATGCAATCCATGTTCGTCGAGGTGACAAACTGAAAACAAG 828
||||||||||||| ||| ||||| ||||| |||||||| || |||||||||||||| ||
Sbjct 998 AGCACAACTTGGTGATTATGATGCCATCCACGTTCGTCGTGGGGACAAACTGAAAACCAG 1057
Query 829 AAAAGACAGGTTTCGCGTTGAAAGAACTCAGTTTCCACATTTAGACAGAGACACACGGCC 888
||||||||| ||| | |||||||| | ||||||||| ||| |||||||||| || || ||
Sbjct 1058 AAAAGACAGATTTGGAGTTGAAAGGATTCAGTTTCCTCATCTAGACAGAGATACGCGCCC 1117
Query 889 AGAGTTCATCATTGGCAGAATTCAGAAGCAAATCCCACCAGGACGGACTCTTTTTATCGG 948
||||| ||| || |||| || |||||| |||||| |||| ||||||||||||| ||
Sbjct 1118 TGAGTTTATCCTTCGCAGGATAGAGAAGCGGATCCCAAGAGGAAGGACTCTTTTTATTGG 1177
Query 949 TTCTAATGAGAG-AACCCCTGGATTCTTT-TCACCTCTAGCTATCAGGTATAAAGTGGCT 1006
|||||||||||| || || ||| || ||| || ||||| || ||||||| ||| |||||
Sbjct 1178 TTCTAATGAGAGGAAGCC-TGGTTT-TTTCTCTCCTCTCGCGGTCAGGTACAAACTGGCT 1235
Query 1007 TATTCATCGAATTTTAGTGAGATTTTGGATCCGATAATCGAAAACAATTATCAGTTGTTC 1066
|| |||||||| ||||| |||||| ||||||| |||||||| || ||||| ||||| |||
Sbjct 1236 TACTCATCGAACTTTAGCGAGATTCTGGATCCTATAATCGAGAATAATTACCAGTTATTC 1295
Query 1067 ATGGTGGAGAGGCTGATAATGATGGGTGC-AAAGACATTCTTCAAAACATTTAGAGAGTA 1125
||| ||||||| ||| |||||||||| || ||| |||| |||||||||||| | ||||||
Sbjct 1296 ATGATGGAGAGACTGGTAATGATGGGAGCCAAA-ACATACTTCAAAACATTCAAAGAGTA 1354
Query 1126 CGAAACGGATCTCACTTTGACAGATGATCCGAAAAAGAACAAGAATTGGGAAATACCAGT 1185
|||||| |||||||| || || |||||||| || ||||| ||||| ||||||||||||||
Sbjct 1355 CGAAACAGATCTCACCTTAACTGATGATCCTAAGAAGAATAAGAACTGGGAAATACCAGT 1414
Query 1186 TTACACCATGGAT-AAAGGCAA-AGAAGCAGCAAGCTAAA 1223
|||||||||||| |||| || ||||| |||||||||||
Sbjct 1415 ATACACCATGGATGAAAG--AAGAGAAGAAGCAAGCTAAA 1452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68021738475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5