BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483187
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41180.1 | Symbols: | VQ motif-containing protein | chr2:17... 1046 0.0
AT3G56710.1 | Symbols: SIB1 | sigma factor binding protein 1 | ... 154 1e-36
> AT2G41180.1 | Symbols: | VQ motif-containing protein | chr2:17165191-17166025
FORWARD LENGTH=835
Length=835
Score = 1046 bits (566), Expect = 0.0
Identities = 766/856 (89%), Gaps = 40/856 (5%)
Strand=Plus/Plus
Query 1 GAGAGCTCACACATCTAAAATCTTCT-CTTATTACAAAAGAAGTAAAAGAAGATGGATCA 59
||||||||||||||||||| | |||| | ||||||||||||| | |||||||||||||||
Sbjct 1 GAGAGCTCACACATCTAAATTTTTCTCCATATTACAAAAGAACT-AAAGAAGATGGATCA 59
Query 60 GTCATCATCAACGTTGCTCATAAACCAGAGAAAGTCATCATCGTCTCCGACGAGGATACC 119
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 60 GTCATCATCAACGTTGCTCATAAACCAGAGAAAGTCATCATCGTCTCCGACTAGGATCCC 119
Query 120 ACCGAAGCAGAAGAGGAAGTCAACGACGAC-CAACAAACCCATCAAAGTCCGTTACATAT 178
||| ||||||||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct 120 ACCTAAGCAGAAGAGGAAGTCAACGACTACGC-ACAAACCCATCAAAGTCCGTTACATAT 178
Query 179 CTAACCCGATGAGAGTCGAGACTTGTCCTTCTAAGTTCAGAGAGCTCGTTCAAGAACTCA 238
| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 179 CAAATCCGATGAGAGTCGAGACTTGTCCTTCTAAGTTCAGAGAGCTTGTTCAAGAACTCA 238
Query 239 CCGGTCAAGACGCCGCCGATCTACCACCGTCACCCACCACTTTCGTCGCAGCAGATCTCC 298
|||||||||||||||| |||||||||||||| ||||||||||| ||| | ||||||||
Sbjct 239 CCGGTCAAGACGCCGCTGATCTACCACCGTCGCCCACCACTTTTACCGCCGTAGATCTCC 298
Query 299 ACCGCCCGTGTGAGTCGGAGATGAACTCT-GAGCCGTTGGATGGTGAGGTTCGT---GAG 354
|||| |||||||||||||||||||||| | |||||||||||||| ||||| ||| |||
Sbjct 299 ACCGTCCGTGTGAGTCGGAGATGAACT-TAGAGCCGTTGGATGGAGAGGTCCGTGGAGAG 357
Query 355 TATTATTCACCGTTGGATGAGGAAGTGTTTAATGCTCCTCAGATGTCGGCAGGTCTTTCT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TATTATTCACCGTTGGATGAGGAAGTGTTTAATGCTCCTCAGATGTCGGCAGGTCTTTCT 417
Query 415 GGTTTTTTCTCGTCTGGGTTTTACAATGTGAATGCTTTAGGAAGCATTGGTTCTCTCTGA 474
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 418 GGTTTTTTCTCGTCTGGATTTTACAATGTTAACGCTTTAGGAAGCATTGGTTCTCTCTGA 477
Query 475 ATATaaaaaaa-GAATGTTTAGTTTCCGGCAGTGAAACACCGATCACGAAGAATAAACCA 533
|| | ||| | |||||||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct 478 ATTTTAAACTATGAATGTTTTGTTTC-GGCACTGAAACACCGATCACGAAGAATAAACCA 536
Query 534 TCTATAGTTTTAGGGTTTTCTTTTCATCAAAACCtatatatagatatataacatatataG 593
|||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||
Sbjct 537 TCTATAGTTTTAGGGTTTTC-----ATCAAAACCTATATATGGATATATTACATATATAG 591
Query 594 tttttttttttGTCGCGAATTATTTGCGTTTGTGAGTATATAAAGAAATCTTTCATTTGT 653
|||||||| | |||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 592 TTTTTTTTCT---CGCGAATTATTTACGTTTGTGAGTATATATAGAAATCTTTCATTTGT 648
Query 654 TTGTG-TGttttt-ttt-ATAATAATC--CAA-CCGTATTAG-----GT-GGGTTTATTT 701
||||| | ||||| ||| |||||||| ||| ||||||||| || |||||||||
Sbjct 649 TTGTGGTTTTTTTATTTTATAATAATAATCAAACCGTATTAGTTTTAGTTGGGTTTATTG 708
Query 702 GTGTAAATATGTAATAGCCTCAAGTAGCTTATAAAATTTTCCAATTTGGTGGTAATGATT 761
||||| ||||||||| | || || | ||| | |||||||||||||| |||||
Sbjct 709 GTGTAGTTATGTAATAAT-T-AAC---CTCA-AAA-TC--CCAATTTGGTGGTAGTGATT 759
Query 762 TTGTGATCAGTTTAATCTCCGATGTAAATGATCACAAACGGAAAAGAAATAATAGTCCAT 821
||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 760 TTGTGATCAGTTTAATCTCTGGTGTAAATGATCACAAACGGAAAAGAAATAATAATCCAT 819
Query 822 TTAGAGCTTTTAAGTT 837
|||||||||||||||
Sbjct 820 ATAGAGCTTTTAAGTT 835
> AT3G56710.1 | Symbols: SIB1 | sigma factor binding protein 1
| chr3:21006750-21007565 REVERSE LENGTH=816
Length=816
Score = 154 bits (83), Expect = 1e-36
Identities = 128/150 (85%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 119 CACCGAAGCAGAAGAGGAAGTCAACGACGACCAACAAACCCATCAAAGTCCGTTACATAT 178
|||| ||||| |||| |||| | || |||| || |||||||||||||| |||||||| |
Sbjct 134 CACCAAAGCAAAAGAAGAAGACGACTTCGACGAATAAACCCATCAAAGTTCGTTACATCT 193
Query 179 CTAACCCGATGAGAG-TCGAGACTTGTCCTTCTAAGTTCAGAGAGCTCGTTCAAGAACTC 237
| ||||| ||||||| || | |||||| ||||||||||||||||||||||||||||||||
Sbjct 194 CAAACCCCATGAGAGTTC-AAACTTGTGCTTCTAAGTTCAGAGAGCTCGTTCAAGAACTC 252
Query 238 ACCGGTCAAGACGCCGCCGATCTACCACCG 267
|| || |||||||||| |||||| | ||||
Sbjct 253 ACAGGCCAAGACGCCGTCGATCTTCAACCG 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40790127364
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5