BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483189
Length=704
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41200.1 | Symbols: | unknown protein; Has 26 Blast hits to... 1088 0.0
> AT2G41200.1 | Symbols: | unknown protein; Has 26 Blast hits
to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:17171625-17173131 FORWARD
LENGTH=720
Length=720
Score = 1088 bits (589), Expect = 0.0
Identities = 671/709 (95%), Gaps = 12/709 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaGAAGAAGAAGGAAGTTATCACAATATGGGTCAAGCTCTCAATACCGCAAAAGG 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AAAAAAACAAGAAGAAGGAAGTTATCACAATATGGGTCAAGCTCTCAATACCGCAAAAGG 61
Query 61 GAAAGGAGAGGTAGACG-GAAAAGACTTGGAAGCTATGGTTGAAAATTGCTACCGCAAAC 119
|||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 62 TAAAGGAGAGGTAGACGCG-AAAGACTTGGAAGCTATGGCTGAAAATTGCTACCGCAAAC 120
Query 120 GCTTAGAAGAACAAAATGACGATCAAGAATGGT-CTTTCGGCGACTTCTACCGCATTGTG 178
||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 121 GCTTAGAAGAAAAAAATGACGATCAAGAATGGTCCTTT-GGCGACTTCTACCGCATTGTG 179
Query 179 GCTGAAGCTGTCGAGGAAATTAATAGAAGACTCGGTGGTACACAACTTAAGGTGCCAAGT 238
|||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 180 GCTGAAGCAGTCGAGGAAATTAACAGAAGACTCGGTGGCACTCAACTTAAGGTGCCAAGT 239
Query 239 GTTGAGAAACTACAACAAGCTTATGAGATACACAATCTCGGGGAGGGGAAGAAGCTATCG 298
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 GTTGAGAAACTACAACAAGCTTATGAGATACACAATCTCGGGCAGGGGAAGAAGCTATCG 299
Query 299 AAGGACGAGTTTCAGAAGCTTCTTCAAGAGGTTTTAATTGGAGCTGGGTTCACCGGCGTC 358
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 300 AAGGACGAGTTTCAGAAGCTTCTTCAAGAGGTTTTAATCGGAGTTGGGTTCACCGGCGTC 359
Query 359 GGAGGAGTAAAAGAGTTTCTACTATTCATCTTCGGAGTTCCTGCGATCGCCGTCTTCATT 418
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 GGAGGAGTAAAGGAATTTCTACTTTTCATCTTCGGAGTTCCTGCGATCGCCGTCTTCATT 419
Query 419 AAGAACCGTATAGCTCCGACGTCCATTCCCAACGACTTGTTTATCCCCGCCATCACATCC 478
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 420 AAGAACCGTATAGCTCCGACGTCCGTTCCCAACGACTTGTTTATCCCCGCCATCACTTCC 479
Query 479 GCCACCGTCTTCCTCCTCGCCAAGCTCAATAAGATATGA---CTCTACTAATTGTTTGAT 535
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 480 GCCACCGTCTTCCTCCTCGCCAAGCTCAATAAGATATGAAGTCTCTACTAATTGTTTGAT 539
Query 536 CCTTTCGAGCTTTGCTTTGTTTTCTTAATTTATATTGGTGATTTGATAATATGTGTGTGG 595
|||||||||||||||||||||| || ||||| ||||||||||||||| |||||||| ||
Sbjct 540 CCTTTCGAGCTTTGCTTTGTTTGCTAAATTTGTATTGGTGATTTGATTATATGTGTTTG- 598
Query 596 AATACTCGGTGAAGCTTAAAGTTTCACTCTTTGAGTTCACTTACGT-GATTGATGAAAAG 654
| ||| ||| ||||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct 599 A-TACACGGAGAAGCTTAAAGTTTCACTCTTTGAGTTCATTTAC-TAGATTGATGAAAAG 656
Query 655 GaaaaaaaaaaTGAACTTATGTTGTTCGACAGAATGCCTCAGTGAGTTT 703
|||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 657 GAAAAAAAAA-TGAACTTATGTTGTTCGACAGAATGCCTCAACGAGTTT 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34108985813
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5