BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483192

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G41225.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   645    0.0  


> AT2G41225.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 30201 Blast hits to 
17322 proteins in 780 species: Archae - 12; Bacteria - 1396; 
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; 
Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:17191028-17191486 
REVERSE LENGTH=459
Length=459

 Score =  645 bits (349),  Expect = 0.0
 Identities = 432/470 (92%), Gaps = 13/470 (3%)
 Strand=Plus/Plus

Query  1    AAGATTTACATACAAAAGGATCATCGAAATGTTTCTGATTGGAGTGGTGATGGTGCTATT  60
            ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct  1    AAGATTTACATACGAAAGGATCGTCGAAATGTTTGTGATTGGAGTGGTGATGGTGCTATT  60

Query  61   GGTGGTTCTTCCGGCCGTTCTGCCGCCGCTTCCGCCGCCGCCGATGATATTTATGGGAAT  120
            || ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  61   GGCGGTTCTTCCAGCCGTTCTGCCGCCGCTTCCGCCGCCGCCGATGATATTGATGGGAAT  120

Query  121  TCCGGTGGTGCTGATGCTAATGCTTATTTACTTAGCCATTCATTATCCACCTCATC-AGT  179
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || 
Sbjct  121  TCCGGTGGTGCTGATGCTAATGCTTATTTACTTAGCCATTTATTATCCACCTCATCAAG-  179

Query  180  CTGATCATCTTCTCTCTTCTTCTTCCTTTGACACTACTCCTAGGCATGTAATGTGATGAT  239
            |   |||| |||||||||| |||||||||||||||||| ||||||||||||||||||| |
Sbjct  180  C---TCATTTTCTCTCTTCATCTTCCTTTGACACTACTTCTAGGCATGTAATGTGATGGT  236

Query  240  AGTGTGACAATGTGTCGATGATCTAAGATGACACAACGCACATATGTGAATGCGTCGTCG  299
            |||| ||||||| ||||||||||  ||||||| |||| ||||||||||||||||||||||
Sbjct  237  AGTGAGACAATGAGTCGATGATC-CAGATGACTCAACTCACATATGTGAATGCGTCGTCG  295

Query  300  TTTGATGATAATTGTGAATCCATGCAGTTTCTATATGATTCAAATTTAGACCCTTTTTCT  359
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  
Sbjct  296  TTTGATGATAATTGTGAATCCATGCAGTTTCTATATGATTAAAATTTAGACCCTTTTT--  353

Query  360  TATGttttttttttttCTTTTCTGTTT-AGCTTAATTCGAGTTGGATCTTCTGATAAGAG  418
             ||||||||| |||| |||||| |||| ||  | |||||||||||||| |||| ||||||
Sbjct  354  -ATGTTTTTTCTTTT-CTTTTC-GTTTTAGGGTGATTCGAGTTGGATCGTCTGGTAAGAG  410

Query  419  TCATTGTAAAATTTGAAAGTGTAATTTCTAATTCTCTAATCAATTGAACC  468
            ||||||||||||||||| ||||||||||||||| |||||||| |||||||
Sbjct  411  TCATTGTAAAATTTGAA-GTGTAATTTCTAATTTTCTAATCAGTTGAACC  459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5