BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483200
Length=1195
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41290.1 | Symbols: SSL2 | strictosidine synthase-like 2 | c... 1692 0.0
> AT2G41290.1 | Symbols: SSL2 | strictosidine synthase-like 2 |
chr2:17210428-17212959 REVERSE LENGTH=1357
Length=1357
Score = 1692 bits (916), Expect = 0.0
Identities = 1109/1202 (92%), Gaps = 14/1202 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaTCTGAAGAAAATGATGAAACTCCTTTTGGTGGTGGCAA-TATCTTTTGCCCTT 59
||||||||||||| ||||||||||||||||| ||||||||||||| | ||| ||||||||
Sbjct 39 AAAAAAATCTGAACAAAATGATGAAACTCCTCTTGGTGGTGGCAACT-TCTGTTGCCCTT 97
Query 60 CTCTTAAGCCTCACTGATTTTTCCGGTGAGAGACCAAAACAT---GGAGATTCCATGTTG 116
|||| ||| |||||||||| ||||||||| ||||||||||| ||||| |||||||||
Sbjct 98 ATCTTTAGCGTCACTGATTTATCCGGTGAGGGACCAAAACATGGAGGAGAATCCATGTTG 157
Query 117 ACAGTCCAATTCCCTGATTTCCGTCTGCTTCCGACCACCGGGGCTTTGGGACCGGAGAGT 176
||||||||| ||||||||||||||||| |||| |||||||| ||||||||||||||||||
Sbjct 158 ACAGTCCAAATCCCTGATTTCCGTCTGATTCCTACCACCGGAGCTTTGGGACCGGAGAGT 217
Query 177 TTTGTCTTCGATTTTTCCGGCGACGGTCCTTACACCGGTTTATCTGACGGTCGAATTGTT 236
|||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 218 TTTGTCTTTGATTTTTTCGGCGATGGTCCTTACACCGGTTTATCTGACGGTCGAATTGTT 277
Query 237 AAGTGGCTAGCTAATGACAGCCGTTGGATCGATTTCGCCGTCACCACCTCCACAAGAGAA 296
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 278 AAGTGGCTAGCTAATGAGAGCCGTTGGATCGATTTCGCCGTCACCACCTCCGCAAGAGAA 337
Query 297 GGTTGTGAGGGCCCGCACGAGCACCAACGAACAGAACACGTGTGTGGACGACCATTGGGC 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 GGTTGTGAGGGCCCGCACGAGCACCAACGAACAGAACACGTGTGTGGACGACCATTGGGC 397
Query 357 CTTGCCTTTGACAAATCCACTGGTGACCTTTATATAGCCGATGCTTATATGGGCCTTCTT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 CTTGCCTTTGACAAATCCACTGGTGACCTTTATATAGCCGATGCTTATATGGGCCTTCTT 457
Query 417 AAAGTTGGCCCAACAGGTGGTGTAGCCAATCAAATTTTGCCACGTGAGCTGAATGAGGCC 476
||||||||||||||||||||||| |||| ||| | || ||||||||||| |||||||||
Sbjct 458 AAAGTTGGCCCAACAGGTGGTGTCGCCACTCAGGTGTTACCACGTGAGCTAAATGAGGCC 517
Query 477 CTTCGATTTACCAATTCATTGGATATCGATCCACAAACCGGAGTTATCTACTTTACCGAC 536
||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||
Sbjct 518 CTTCGATTTACCAATTCTTTGGATATCAATCCACGGACCGGAGTTGTCTACTTTACCGAC 577
Query 537 AGTAGTTCGGTTTATCAACGGAGGAACTATATAGGGGCGATGATGAGTGGGGACAGAACC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 578 AGTAGTTCGGTTTATCAACGGAGGAACTATATAGGGGCGATGATGAGTGGGGACAAAACT 637
Query 597 GGTAGACTGATGAAGTACGACCCAAATACGAAACAAGTGACCACTCTTTTAAGCAACCTA 656
||||||||||||||||||||| || ||||||||||||||||||||| |||||||| ||
Sbjct 638 GGTAGACTGATGAAGTACGAC--AAC-ACGAAACAAGTGACCACTCTTCTAAGCAACTTA 694
Query 657 GCGTTCCCAAACGGTGTCGTTTTAAGCCAAAACGGTGATTACCTTCTCGTCGTCGAGACC 716
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 695 GCGTTTGTAAACGGTGTCGCTTTAAGCCAAAACGGTGATTACCTTCTCGTCGTCGAGACC 754
Query 717 GCCACGTGTCGGGTTCT-ACGTTACTGGCGCAGCGCCACGTCGACGACGTGTAAATCTCG 775
|||| |||||| | || ||||||||||| || || |||||| | || | ||||||
Sbjct 755 GCCATGTGTCGTAT-CTTACGTTACTGGCTCAACGAAACGTCGGTAAAGTCTCAATCTCA 813
Query 776 CGAGAACTACGAGATTTTCGCGGAGGGGCTCCCCGGGTTTCCCGACAACATAAAGAGGAG 835
||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 814 CGATAACTACGAGATTTTCGCGGAGGGGCTCCCTGGGTTTCCAGACAACATAAAGAGAAG 873
Query 836 TCCACGTGGCGGATTCTGGGTAGGCTTGAACACGAAACACTCAAAGCTGACAAAGTTTGC 895
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 874 TCCACGTGGCGGATTCTGGGTAGGCTTGAACACAAAACACTCAAAGCTGACAAAGTTCGC 933
Query 896 CATGTCCAACGCGTGGCTTGGACGCGCCGCTTTGGGCCTGCCGGTGGACTGGATGAAGGT 955
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 934 CATGTCGAACGCGTGGCTTGGACGTGCCGCTTTGGGCCTGCCGGTGGATTGGATGAAGGT 993
Query 956 CCATTCGGTTTGGGCCAAGTACAACGGGAACGGCATGGCCGTGAGGTTGAGCGAGGATAG 1015
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 994 CCATTCGGTTTGGGCCAGGTACAATGGGAACGGCATGGCCGTGAGGTTGAGCGAGGATAG 1053
Query 1016 TGGCGTAAT-TTCGGAGGTATTCGAGGGTCAAAAAGGAAA-TAAGTGGATATCTATAAGT 1073
|||||| || || | |||||||||| ||| ||||| |||| |||||||||||||||||||
Sbjct 1054 TGGCGTTATATTAG-AGGTATTCGAAGGT-AAAAATGAAAATAAGTGGATATCTATAAGT 1111
Query 1074 GAGGTTGAAGAAAGAGATGGAACTCTTTGGGTTGGATCGGTAAATACTCCTTTCGCTGGC 1133
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1112 GAGGTTGAAGAAAAAGATGGAACTCTTTGGGTTGGATCGGTGAATACTCCTTTCGCTGGC 1171
Query 1134 ATGTATAAAATCTAAAATTGATTAATACAGATGTGCTTTTCCAACCTTAAAATTCATAGA 1193
||||||||||||||||||||| ||||||| || || ||||||||| || ||||||| |
Sbjct 1172 ATGTATAAAATCTAAAATTGAGTAATACAAATATGTTTTTCCAACAATATGATTCATATA 1231
Query 1194 TA 1195
||
Sbjct 1232 TA 1233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58684437105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5