BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483202
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41310.1 | Symbols: ATRR3, ARR8, RR3 | response regulator 3 ... 1086 0.0
AT2G07440.1 | Symbols: | two-component responsive regulator-re... 459 4e-128
AT3G57040.1 | Symbols: ARR9, ATRR4 | response regulator 9 | chr... 455 6e-127
AT2G29605.1 | Symbols: | Plant protein 1589 of unknown functio... 147 4e-34
AT2G29850.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 141 2e-32
> AT2G41310.1 | Symbols: ATRR3, ARR8, RR3 | response regulator
3 | chr2:17221933-17224427 FORWARD LENGTH=1824
Length=1824
Score = 1086 bits (588), Expect = 0.0
Identities = 770/853 (90%), Gaps = 31/853 (4%)
Strand=Plus/Plus
Query 163 tttttttt--t-tCTTTCTaaagaaggaaaacaaaacaaagaagaaaaaaagttgaaaaC 219
|||||||| | |||||||||||||||| | |||||| | || | | ||||||||||||
Sbjct 230 TTTTTTTTAATCTCTTTCTAAAGAAGGATATCAAAAC--A-AA-ACACAAAGTTGAAAAC 285
Query 220 TTTGCATCTGGGTTTGTCGAATTTAGATTCAGATCTT-GAAAGTTTCGATTGAATCTCTG 278
|||||||||||||||||| | |||||||||||||||| | |||||||||||| |||
Sbjct 286 TTTGCATCTGGGTTTGTCTATTTTAGATTCAGATCTTAGTTTTTTTCGATTGAATATCT- 344
Query 279 GCAATGGTAATGGAAACAGAGTCAAAGTTCCATGTTTTAGCTGTTGATGATAGTCTTTTT 338
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 ACAATGGTAATGGAAACAGAGTCAAAGTTCCATGTTTTAGCTGTTGATGATAGTCTTTTT 404
Query 339 GATCGGAAAATGATAGAGAGATTGCTCCAAAAGTCTTCATGTCAAGTAACTACAGTTGAT 398
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 405 GATCGGAAAATGATTGAGAGATTGCTTCAAAAGTCTTCATGTCAAGTAACTACAGTTGAT 464
Query 399 TCAGGCTCTAAAGCTCTTGAATTTCTGGGTTTAAGAGTAGATGACAACAACCCAAATGCG 458
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 465 TCAGGCTCTAAAGCTCTGGAATTTCTGGGTTTAAGAGTAGATGACAACGACCCAAATGCA 524
Query 459 CTCTCTACATCACCCCAAATTCATCAGGAAGTTGAAATAAATCTTATAATAACAGATTAC 518
||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 525 CTCTCTACATCGCCACAAATTCATCAGGAAGTTGAAATAAATCTAATAATTACAGATTAC 584
Query 519 TGTATGCCTGGCATGACTGGTTATGATTTGCTCAAGAAAGTTAAGGAATCAGCGGCATTA 578
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 585 TGTATGCCTGGCATGACTGGTTATGATTTGCTCAAGAAAGTTAAGGAATCAGCGGCGTTT 644
Query 579 AGAAGCATACCTGTCGTTATAATGTCATCTGAGAACGTTCCAGCTAGAATCTCCAGATGT 638
||||| |||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 645 AGAAGTATACCTGTAGTTATAATGTCATCTGAGAACGTTCCTGCAAGAATCTCCAGATGT 704
Query 639 TTGGAAGAAGGAGCTGAAGAGTTTTTCTTGAAACCAGTAAAGTTAGCTGATCTTACCAAG 698
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 705 TTGGAAGAAGGAGCTGAAGAGTTTTTCTTGAAACCAGTGAAGTTAGCTGATCTTACCAAG 764
Query 699 TTGAAACCTCATATGATGAAAACCAAATTGAAGAAAGAAAGTGAGAAACCAGTTGCCATA 758
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 765 TTGAAACCTCATATGATGAAAACGAAGTTGAAGAAAGAAAGTGAGAAACCAGTTGCCATA 824
Query 759 GAAGAGATTGTAGTTTCTAAACCGGAGATAGAA-AA-A-GAAGAAGCTTCATCAGTGATT 815
||||||||||| || |||||||||||||||||| || | ||||||| ||||||||||||
Sbjct 825 GAAGAGATTGTGGTGTCTAAACCGGAGATAGAAGAAGAAGAAGAAGAGTCATCAGTGATT 884
Query 816 GAGATCTTGCCTCTCCACCAAGAA-------C--------TTGAACCAATGTTGAGTAGT 860
|| ||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 885 GAAATCTTGCCTCTCCACCAAGAAATTGAATCCGAACAACTTGAACCAATGTTGAGTAGT 944
Query 861 AATAAGCGGAAAGCAATGGAAGAAGTGATATCTACTGATCGATCACGTCCTAAATACAAT 920
|||||| | |||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 945 AATAAGAGAAAAGCAATGGAAGAAGTGGTTTCTACTGATCGATCACGTCCTAAATACAAT 1004
Query 921 GATTTCACAACCTCAGTCTGACAA-ACTACTGACGCAAATCGAGCA-CCTGCTAGACGAC 978
||| |||||||||| |||||| | | ||| |||||| |||| | || ||| | |||
Sbjct 1005 GATATCACAACCTCGGTCTGA-AGGAGGACTAACGCAACCCGAGAAGCCA-CTACAAGAC 1062
Query 979 CAATATGGAGAAT 991
| |||||||||||
Sbjct 1063 CTATATGGAGAAT 1075
Score = 507 bits (274), Expect = 2e-142
Identities = 394/449 (88%), Gaps = 20/449 (4%)
Strand=Plus/Plus
Query 991 TTGAATATGAGGCAAACAACAAC-GCCTTGCAAGGAGTAATACCGCAACAACAGCGTCAT 1049
|||||||||| |||||||||||| | | ||| ||||||||||||||| | | | |||
Sbjct 1229 TTGAATATGAAGCAAACAACAACGGAC-TGCTAGGAGTAATACCGCAGC-A-A----CAT 1281
Query 1050 CCTTATCATCAGGAACAAGAGACAAACCAGACACAAGGAGATCCACTGAATCGAATACTT 1109
| ||||||||||||| ||||||||| |||||||||||||||||||| |||||||||| |
Sbjct 1282 CGTTATCATCAGGAAAAAGAGACAATGCAGACACAAGGAGATCCACTAAATCGAATACCT 1341
Query 1110 GTTCAATTAGAAGCTTTAAACCATTCAGATAGTGGTGATAGCACATTAACAATGGCTCAG 1169
|||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1342 ATTCAATCAGAAGCTTCAAACCATTCAGATAGTGGTGATAGCACACTAACAATGGCTCAA 1401
Query 1170 AACCAGCATGGTCTCC-A-A-AGTAGTGGATTTATTATTATCTGTCAATTTACTTCTCTC 1226
|||||| |||||||| | | |||||| | ||| | ||| ||||||||||||||||||||
Sbjct 1402 AACCAGGATGGTCTCGGACACAGTAGTTG-TTT-T-ATTCTCTGTCAATTTACTTCTCTC 1458
Query 1227 CTCTAGATTAGCTTTCTTAGttttttt-tttc-tttttCATGGGGTGATAAACCCACAAG 1284
| |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||
Sbjct 1459 CCCTAGATTAGCTTTCTTCGTTTTTTTCTTTTATTTTTCATGCTGT--TAAACCCACAAG 1516
Query 1285 ATTTTTAGAAAGTTTCTTGCTACTAGCTTAATAATCCAAAACTATTGCAAAGATCGGATT 1344
|||||| | |||||||||||||||||||||| |||||||||||||||||||||| | |
Sbjct 1517 ATTTTTGGGAAGTTTCTTGCTACTAGCTTAAGAATCCAAAACTATTGCAAAGATTGAAGC 1576
Query 1345 TTTCGAGAATTAG-AATTGAATCTTATCAAAACTAACAACTACATTCACTAGCTTAAGAA 1403
||||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1577 TTTCGAGAATTAGTAAT-GAATCTTATCAAAACTAACAGCTACATTTACTAGCTTAAGAA 1635
Query 1404 CCATCAAACGAATTATAAAATTCTCTCAT 1432
|||| ||||||||| ||||||||||||||
Sbjct 1636 CCATTAAACGAATTGTAAAATTCTCTCAT 1664
> AT2G07440.1 | Symbols: | two-component responsive regulator-related
/ response regulator protein-related | chr2:3093821-3094750
REVERSE LENGTH=411
Length=411
Score = 459 bits (248), Expect = 4e-128
Identities = 351/396 (89%), Gaps = 25/396 (6%)
Strand=Plus/Plus
Query 563 GGAATCAGCGGCATTAAGAAGCATACCTGTCGTTATAATGTCATCTGAGAACGTTCC-AG 621
||||||||| ||||| ||||| |||| ||| |||||||||||||||||||||||||| |
Sbjct 24 GGAATCAGCAGCATTTAGAAGTATACATGTAGTTATAATGTCATCTGAGAACGTTCCTA- 82
Query 622 CTAGAATCTCCAGATGTTTGGAAGAAGGAGCTGAAGAGTTTTTCTTGAAACCAGTAAAGT 681
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 83 CAAGAATCTCCAGATGTTTGGAAAAAGGAGCTGAAGAGTTTTTCTTGAAACCAGTAAAGT 142
Query 682 TAGCTGATCTTACCAAGTTGAAACCTCATATGATGAAAACCAAA-TTGAAGAAAGAAAGT 740
||| ||||| ||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 143 TAGTTGATCATACCAAGTTGAAACCTCATATGATGAAAA-CAAAGTTAAAGAAAGAAAGT 201
Query 741 GAGAAACCAGTTGCCATAGAAGAGATTGTAGTTTCTAAACCGGAGATAGAAAAAGAAGAA 800
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 202 GAGAAACCAGTTGCCATAGAAGAGATTGTGGTTTCTAAACCGGAGATAGAA---GAAGA- 257
Query 801 GCTTCATCAGTGATTGAGATCTTGCCTCTCCACCAAGAA-------C--------TTGAA 845
| | ||| ||||||||| || |||||||||||||||||| | |||||
Sbjct 258 G-T-CATTAGTGATTGACATTTTGCCTCTCCACCAAGAAGTTGAATCGGAACAACTTGAA 315
Query 846 CCAATGTTGAGTAGTAATAAGCGGAAAGCAATGGAAGAAGTGATATCTACTGATCGATCA 905
||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| ||
Sbjct 316 CCAATGTTGAGTAGTAATAAGAGAAAAGCAATGGAAGAAGTGATATCTACGGATCGACCA 375
Query 906 CGTCCTAAATACAATGATTTCACAACCTCAGTCTGA 941
|||||||||||||||||| |||||||||| ||||||
Sbjct 376 CGTCCTAAATACAATGATATCACAACCTCGGTCTGA 411
> AT3G57040.1 | Symbols: ARR9, ATRR4 | response regulator 9 | chr3:21109614-21111432
FORWARD LENGTH=1354
Length=1354
Score = 455 bits (246), Expect = 6e-127
Identities = 464/563 (82%), Gaps = 40/563 (7%)
Strand=Plus/Plus
Query 194 aacaaagaagaaaaaaagttgaaaaCTTTGCATCTGGGTTTGTCGAATTT-AGATTCAGA 252
|||||| || ||||||||| ||| ||||| |||||||||| ||| |||| ||| | |||
Sbjct 358 AACAAA-AA-AAAAAAAGTCGAAGACTTTACATCTGGGTTCATCG-ATTTGAGA-TAAGA 413
Query 253 ---TCTTGA-AAGTT-TCGATTGAA-TCTCTGGCAAT-GGTAATGGAAACAGAGTCAAAG 305
|||| | ||| || || || | ||| ||||| ||| |||| | |||| || ||
Sbjct 414 TCTTCTTTATTTGTTATC--TTCAAGTTTCT-GCAATGGGT-ATGGCAGCAGAATCGCAG 469
Query 306 TTCCATGTTTTAGCTGTTGATGATAGTCTT-TTTGATCGGAAAATGATAGAGAGATTGCT 364
|| |||||||||||||||||||||||| || |||||||||||| | || |||||||||||
Sbjct 470 TTTCATGTTTTAGCTGTTGATGATAGT-TTATTTGATCGGAAACTTATTGAGAGATTGCT 528
Query 365 CCAAAAGTCTTCATGTCAAGTAACTACAGTTGATTCAGGCTCTAAA-GCTCTT-GAATTT 422
||||||||||| ||||||||||| || |||||||| ||||| ||| ||| || || |||
Sbjct 529 TCAAAAGTCTTCGTGTCAAGTAACAACTGTTGATTCTGGCTC-AAAGGCT-TTGGAGTTT 586
Query 423 CTGGGTTTAAG----AGTA--GATGA-CAACAACCCAAATGCGCTCTCTACA-TCACC-C 473
||||||||||| |||| ||| | ||| ||||||||||| | |||| | | ||
Sbjct 587 CTGGGTTTAAGACAAAGTACTGAT-AGTAACGACCCAAATGCGTTTTCTA-AGGCTCCTG 644
Query 474 CAAATTCATCAGGAAGTTGAAATAAATCTTATAATAACAGATTACTGTATGCCTGGCATG 533
|| ||| |||| ||||||| | ||||||||||| |||||||| |||||||||||||||
Sbjct 645 TTAA-TCACCAGGTAGTTGAAGTGAATCTTATAATTACAGATTATTGTATGCCTGGCATG 703
Query 534 ACTGGTTATGATTTGCTCAAGAAAGTTAAGGAATCAGCGGCATTAAGA-AGCATACCTGT 592
|||||||||||||||||||||||||| ||||||||| | || || ||| | ||||| ||
Sbjct 704 ACTGGTTATGATTTGCTCAAGAAAGTCAAGGAATCATCAGCTTTTAGAGAT-ATACCAGT 762
Query 593 CGTTATAATGTCATCTGAGAACGTTCCAGCTAGAATCTCCAGATGTTTGGAAGAAGGAGC 652
||||| ||||| || ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct 763 AGTTATCATGTCCTCAGAGAACGTTCCTGCAAGAATCAGCAGATGTTTAGAAGAAGGAGC 822
Query 653 TGAAGAGTTTTTCTTGAAACCAGTAA-AGTTAGCTGATCTTACCAAGTTGAAACCTCATA 711
|||||||||||||||||||||||||| | || |||||||||| |||||||||||||||||
Sbjct 823 TGAAGAGTTTTTCTTGAAACCAGTAAGA-TTGGCTGATCTTAACAAGTTGAAACCTCATA 881
Query 712 TGATGAAAACCAAA-TTGAAGAA 733
|||||||||| ||| ||||||||
Sbjct 882 TGATGAAAAC-AAAGTTGAAGAA 903
> AT2G29605.1 | Symbols: | Plant protein 1589 of unknown function
| chr2:12657909-12660087 REVERSE LENGTH=1206
Length=1206
Score = 147 bits (79), Expect = 4e-34
Identities = 138/163 (85%), Gaps = 18/163 (11%)
Strand=Plus/Plus
Query 988 GAA-TTGAATAT-GAGGCAAACAACAACG-CCTTGCAAGGAGTAATACCGCAACAACAGC 1044
||| |||||||| || ||||||| ||||| | ||||||||||||||||||| |||||
Sbjct 1051 GAAGTTGAATATCGA-GCAAACAGCAACGAGC-TGCAAGGAGTAATACCGCAGCAACA-- 1106
Query 1045 GTCATCCTTATCATCAGGAACAAG-AGACAAACCAGACACAAGGAGATCCACTGAATCGA 1103
| | ||||||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct 1107 ---A--C--ATCATCAGGAACAAGAAG-CAATGCAGACACAAGGAGATCCACTGAATCGA 1158
Query 1104 ATACTTGTTCAAT-TAGAAGCTTTAAACCATTCAGATAGTGGT 1145
|||| |||||||| | ||||||| |||||||||||||||||||
Sbjct 1159 ATACCTGTTCAATCT-GAAGCTTCAAACCATTCAGATAGTGGT 1200
> AT2G29850.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: Plant protein 1589 of unknown function
(TAIR:AT2G29605.1); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa
- 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes
- 9610 (source: NCBI BLink). | chr2:12734725-12736394 FORWARD
LENGTH=855
Length=855
Score = 141 bits (76), Expect = 2e-32
Identities = 137/163 (84%), Gaps = 18/163 (11%)
Strand=Plus/Plus
Query 988 GAA-TTGAATAT-GAGGCAAACAACAACG-CCTTGCAAGGAGTAATACCGCAACAACAGC 1044
||| || ||||| || ||||||| ||||| | ||||||||||||||||||| |||||
Sbjct 700 GAAGTTAAATATCGA-GCAAACAGCAACGAGC-TGCAAGGAGTAATACCGCAGCAACA-- 755
Query 1045 GTCATCCTTATCATCAGGAACAAG-AGACAAACCAGACACAAGGAGATCCACTGAATCGA 1103
| | ||||||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct 756 G-----C--ATCATCAGGAACAAGAAG-CAATGCAGACACAAGGAGATCCACTGAATCGA 807
Query 1104 ATACTTGTTCAAT-TAGAAGCTTTAAACCATTCAGATAGTGGT 1145
|||| |||||||| | ||||||| |||||||||||||||||||
Sbjct 808 ATACCTGTTCAATCT-GAAGCTTCAAACCATTCAGATAGTGGT 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581966270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5