BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483205

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G41342.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   667    0.0  


> AT2G41342.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:17230533-17231037 
REVERSE LENGTH=505
Length=505

 Score =  667 bits (361),  Expect = 0.0
 Identities = 453/496 (91%), Gaps = 11/496 (2%)
 Strand=Plus/Plus

Query  1    AGCAAATACACAATTTGGTCCAACAGTAAACCAACTCC-TCTGTCTCTCTCTCATTTGTT  59
            |||||||||| |||||||||||||| ||||||||| || ||||||||| |||||||||||
Sbjct  15   AGCAAATACATAATTTGGTCCAACACTAAACCAAC-CCTTCTGTCTCTATCTCATTTGTT  73

Query  60   CTTTAATTTTCCTTGTA-TATCCTATCTGATTAATTCTTTCCATCAAAAATTTTAGTTTT  118
            ||| || ||| | | || | || ||||||| ||||||||| ||||||| |||||||||||
Sbjct  74   CTTAAACTTT-CATCTATTTTCGTATCTGAATAATTCTTTTCATCAAAGATTTTAGTTTT  132

Query  119  GAACCACATGGGCTCAAGTTTGTGCTGTTCTCGCGATCCAGATACCACCAGAAGTAGTAC  178
            |||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct  133  GAACCACATGGGATCAAGTTTGTGCTGTTCTCGCGATCCAGATAGCACCAGACGTAGTAC  192

Query  179  GATGGGGAACACGAGCGACCGGAGGTGGCAAACCGGCGACGACAACTATCTATCGGACAC  238
            |||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  193  GATGGGGAGCACTAGCGACCGGAGGTGGCAAACCGGCGACGACAAGTATCTATCGGACAC  252

Query  239  AAGCACCTTCTCCGTGAAGGAGCAAGATCATCAGCTTAAGGCGGCCAGATTGGAGGAGCA  298
            ||||||||| ||||||||||||||||| |||||||||||||||||||||  |||||||||
Sbjct  253  AAGCACCTTTTCCGTGAAGGAGCAAGAGCATCAGCTTAAGGCGGCCAGACGGGAGGAGCA  312

Query  299  AAGACTTGGCCTTGAAGCTGAGAAAGTTAACACATGGGTCAAACATGAATCAGCCAGATT  358
            ||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct  313  AAGACTTGGCCATGAAGCTGAGAAAGTCAACTCATGGGTCAAACATGAATCAGCCAGATT  372

Query  359  CGACCATCGTCCATAGTTGACCATTGCTTTGATTTGACCAAGCTTTCCTATGTTTTTGTA  418
            |||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||
Sbjct  373  CGACCATCGTCCATAGTTGACCATTGTTTTGTTTTGACCAAGCTTTC-TATGTTTTTGTA  431

Query  419  AACTATCAAACAGAGTTGTGTATAATATAT-A-CCACACATTAAT-AGTTATCAAAATT-  474
            |||||| ||||||||||||||||  ||| | | |||||||||||| |  |||||||||| 
Sbjct  432  AACTATTAAACAGAGTTGTGTATT-TATGTTAACCACACATTAATTAACTATCAAAATTG  490

Query  475  TTATGGTTTAGAGACC  490
            || |||||||||||||
Sbjct  491  TT-TGGTTTAGAGACC  505



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23358878355


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5