BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483213

Length=458
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G41415.1 | Symbols:  | Maternally expressed gene (MEG) famil...   409    1e-113


> AT2G41415.1 | Symbols:  | Maternally expressed gene (MEG) family 
protein | chr2:17264402-17265082 REVERSE LENGTH=579
Length=579

 Score =  409 bits (221),  Expect = 1e-113
 Identities = 251/265 (95%), Gaps = 4/265 (2%)
 Strand=Plus/Plus

Query  1    CATTCAAACCATGAAATCATCACATGCATCTCTCATCTGCATACTGTTGCTCTCTCTATT  60
            ||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||
Sbjct  49   CATTCAAACCATGAAATCATCCCATGCATATCTCGTCTGCATACTGTTGCTCTCTCTATT  108

Query  61   TGCTCTACATCAATGTGTGAGGTTACAAAGATCGAACAAAATCGATATGTCTGTATGCGT  120
            | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  109  TTCTCTACATCAATGTGTGAGGTTAGAAAGATCGAACAAAATCGATATGTCTGTATGCGT  168

Query  121  CCATGACATTTGCGGCGGTGTTTTCGACGGAGGCTGTTATTGCTGTCCCAAAACGCCAGC  180
            |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  169  CCATGAAATTTGCGGTGGTGTTTTCGACGGAGGCTGTTATTGCTGTCCCAAAACGCCAGC  228

Query  181  TCTTTGCTGGGCAGACA-ACCAATTCTGCACCACCTATTGTCACGCTCAAAGTTAAAACC  239
            ||||||||||||||||| || ||||||||||||||||||||||  |||||| ||||||||
Sbjct  229  TCTTTGCTGGGCAGACATAC-AATTCTGCACCACCTATTGTCAATCTCAAACTTAAAACC  287

Query  240  TTTTAAATAAACTGATCTGGAGCTA  264
            ||  |||||||||||||||||||||
Sbjct  288  TT--AAATAAACTGATCTGGAGCTA  310


 Score =  191 bits (103),  Expect = 6e-48
 Identities = 136/151 (90%), Gaps = 5/151 (3%)
 Strand=Plus/Plus

Query  312  TCTTGAGGTTTAAAGATCTTGTGAAAGGATGTTGAGGTGTAGTCATTA---ATTATGTGT  368
            |||||||||||||||||||| |||||| ||||||||||| | ||  ||   ||||||| |
Sbjct  418  TCTTGAGGTTTAAAGATCTTTTGAAAGCATGTTGAGGTGGAATC-GTAGCCATTATGTAT  476

Query  369  TTCCTTAGTTTACAAGTAATATACCATAATATTTGTTGTGATG-TTTTCTATTTTATAAT  427
            ||||||||||||||||||||||||||||||||||||| ||||| |||||| || || |||
Sbjct  477  TTCCTTAGTTTACAAGTAATATACCATAATATTTGTTTTGATGTTTTTCTGTTGTAGAAT  536

Query  428  CGGGGAATCTCATAAATTCAGACTTATTGAG  458
            |||||||||||||||||||||||||||||||
Sbjct  537  CGGGGAATCTCATAAATTCAGACTTATTGAG  567



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21816203066


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5